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Structure paper

TitleVisualizing chaperonin function in situ by cryo-electron tomography
Journal, issue, pagesNature, Year 2024
Publish dateMay 23, 2023 (structure data deposition date)
AuthorsWagner J / Caravajal AI / Beck F / Bracher A / Wan W / Bohn S / Koerner R / Baumeister W / Fernandez-Busnadiego R / Hartl FU
External linksSearch PubMed
MethodsEM (single particle) / EM (subtomogram averaging)
Resolution2.5 - 15.2 Å
Structure data

17418

8p4m

EMDB-17418, PDB-8p4m:
CryoEM structure of a C7-symmetrical GroEL7-GroES7 cage in presence of ADP-BeFx
Method: EM (single particle) / Resolution: 2.5 Å

17420

8p4n

EMDB-17420, PDB-8p4n:
CryoEM structure of a GroEL7-GroES7 cage with encapsulated disordered substrate MetK in the presence of ADP-BeFx
Method: EM (single particle) / Resolution: 2.9 Å

17421

8p4o

EMDB-17421, PDB-8p4o:
CryoEM structure of a GroEL7-GroES7 cage with encapsulated ordered substrate MetK in the presence of ADP-BeFx
Method: EM (single particle) / Resolution: 3.04 Å

EMDB-17422: Density for MetK encapsulated in the GroEL7-GroES7 cage
Method: EM (single particle) / Resolution: 3.7 Å

EMDB-17423: Symmetry-averaged GroEL7-GroES7 chamber with encapsulated disordered substrate MetK obtained by in vitro cryo electron tomography
Method: EM (subtomogram averaging) / Resolution: 7.6 Å

EMDB-17424: Symmetry-averaged GroEL7-GroES7 chamber with encapsulated ordered substrate MetK obtained by in vitro cryo electron tomography
Method: EM (subtomogram averaging) / Resolution: 8.0 Å

17425

8p4p

EMDB-17425, PDB-8p4p:
Structure average of GroEL14 complexes found in the cytosol of Escherichia coli overexpressing GroEL obtained by cryo electron tomography
Method: EM (subtomogram averaging) / Resolution: 9.6 Å

17426

8p4r

EMDB-17426, PDB-8p4r:
In situ structure average of GroEL14-GroES14 complexes in Escherichia coli cytosol obtained by cryo electron tomography
Method: EM (subtomogram averaging) / Resolution: 11.9 Å

EMDB-17534: Cryo-EM structure of a D7-symmetrical GroEL14-GroES14 complex in presence of ADP-BeFx
Method: EM (single particle) / Resolution: 2.74 Å

EMDB-17535: Cryo-EM structure of a C7-symmetrical GroEL14-GroES7 complex in presence of ADP-BeFx
Method: EM (single particle) / Resolution: 2.66 Å

EMDB-17559: In situ structure average of GroEL7-GroES7 chamber with no or disordered substrate in Escherichia coli cytosol obtained by cryo electron tomography
Method: EM (subtomogram averaging) / Resolution: 15.1 Å

EMDB-17560: In situ structure average of GroEL7-GroES7 chamber with encapsulated, ordered substrate in Escherichia coli cytosol obtained by cryo electron tomography
Method: EM (subtomogram averaging) / Resolution: 15.2 Å

EMDB-17561: Cryo-ET subtomogram of 70S ribosomes in Escherichia coli cells at 37 and 46 degrees centigrade and in Escherichia coli cells overexpressing GroELS and MetK
Method: EM (subtomogram averaging) / Resolution: 8.4 Å

EMDB-17562: Cryo-ET subtomogram of 70S ribosomes in Escherichia coli cells overexpressing GroEL
Method: EM (subtomogram averaging) / Resolution: 6.3 Å

EMDB-17563: CryoEM structure of a GroEL14-GroES7 cage with encapsulated ordered substrate MetK in the presence of ADP-BeFx
Method: EM (single particle) / Resolution: 3.47 Å

EMDB-17564: CryoEM structure of a GroEL14-GroES7 cage with encapsulated disordered substrate MetK in the presence of ADP-BeFx
Method: EM (single particle) / Resolution: 3.22 Å

EMDB-17565: CryoEM structure of a GroEL14-GroES14 cage with two encapsulated disordered MetK substrates in the presence of ADP-BeFx
Method: EM (single particle) / Resolution: 3.22 Å

EMDB-17566: CryoEM structure of a (GroEL)14-(GroES)14 complex with encapsulated ordered MetK substrate in one chamber and no or disordered MetK substrate in the other chamber in the presence of ADP-BeFx
Method: EM (single particle) / Resolution: 3.15 Å

EMDB-17567: Conformer 1 of the (GroEL)14(GroES)14 complex with two encapsulated, ordered and near-native MetK substrate molecules in the presence of ADP-BeFx
Method: EM (single particle) / Resolution: 4.5 Å

EMDB-17568: Conformer 2 of the (GroEL)14(GroES)14 complex with two encapsulated, near-native and ordered MetK substrates in the presence of ADP-BeFx
Method: EM (single particle) / Resolution: 4.4 Å

EMDB-17569: Conformer 3 of the (GroEL)14(GroES)14 complex with two encapsulated, near-native and ordered MetK substrates in the presence of ADP-BeFx
Method: EM (single particle) / Resolution: 4.4 Å

EMDB-17570: Conformer 4 of the (GroEL)14(GroES)14 complex with two encapsulated, near-native and ordered MetK substrates in the presence of ADP-BeFx
Method: EM (single particle) / Resolution: 4.4 Å

EMDB-17571: Conformer 5 of the (GroEL)14(GroES)14 complex with two encapsulated, near-native and ordered MetK substrates in the presence of ADP-BeFx
Method: EM (single particle) / Resolution: 4.7 Å

EMDB-17572: Conformer 6 of the (GroEL)14(GroES)14 complex with two encapsulated, near-native and ordered MetK substrates in the presence of ADP-BeFx
Method: EM (single particle) / Resolution: 4.4 Å

EMDB-17573: Conformer 7 of the (GroEL)14(GroES)14 complex with two encapsulated, near-native and ordered MetK substrates in the presence of ADP-BeFx
Method: EM (single particle) / Resolution: 4.4 Å

18735

8qxs

EMDB-18735, PDB-8qxs:
CryoEM structure of a GroEL14-GroES7 complex in presence of ADP-BeFx with wide GroEL7 trans ring conformation
Method: EM (single particle) / Resolution: 3.12 Å

18736

8qxt

EMDB-18736, PDB-8qxt:
CryoEM structure of a GroEL14-GroES7 complex in presence of ADP-BeFx with narrow GroEL7 trans ring conformation
Method: EM (single particle) / Resolution: 2.9 Å

18737

8qxu

EMDB-18737, PDB-8qxu:
In situ structure average of GroEL14-GroES7 complexes with wide GroEL7 trans ring conformation in Escherichia coli cytosol obtained by cryo electron tomography
Method: EM (subtomogram averaging) / Resolution: 12.0 Å

18738

8qxv

EMDB-18738, PDB-8qxv:
In situ structure average of GroEL14-GroES7 complexes with narrow GroEL7 trans ring conformation in Escherichia coli cytosol obtained by cryo electron tomography
Method: EM (subtomogram averaging) / Resolution: 13.6 Å

Chemicals

ChemComp-ADP:
ADENOSINE-5'-DIPHOSPHATE / ADP, energy-carrying molecule*YM

ChemComp-MG:
Unknown entry

ChemComp-BEF:
BERYLLIUM TRIFLUORIDE ION

ChemComp-K:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-ATP:
ADENOSINE-5'-TRIPHOSPHATE / ATP, energy-carrying molecule*YM

Source
  • escherichia coli (E. coli)
  • escherichia coli bl21(de3) (bacteria)
KeywordsCHAPERONE / Chaperonin / Folding cage / proteostasis / heat shock / ATPase

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