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Structure paper

タイトルGroup deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2
ジャーナル・号・ページTo Be Published
掲載日2024年10月15日 (構造データの登録日)
著者Aschenbrenner, J.C. / Saini, M. / Chopra, A. / Marples, P.G. / Balcomb, B.H. / Lithgo, R.M. / Fearon, D. / von Delft, F. / Ruiz, F.X. / Arnold, E.
リンクPubMedで検索
手法X線回折
解像度1.5 - 2.43 Å
構造データ

PDB-7hkb:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with Z438067480 (DNV2_NS5A-x0135)
手法: X-RAY DIFFRACTION / 解像度: 1.61 Å

PDB-7hkc:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with Z4628744292 (DNV2_NS5A-x0160)
手法: X-RAY DIFFRACTION / 解像度: 1.74 Å

PDB-7hkd:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with Z53825479 (DNV2_NS5A-x0172)
手法: X-RAY DIFFRACTION / 解像度: 1.66 Å

PDB-7hke:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with Z53860899 (DNV2_NS5A-x0174)
手法: X-RAY DIFFRACTION / 解像度: 1.64 Å

PDB-7hkf:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with Z55669204 (DNV2_NS5A-x0191)
手法: X-RAY DIFFRACTION / 解像度: 1.58 Å

PDB-7hkg:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with Z56953052 (DNV2_NS5A-x0210)
手法: X-RAY DIFFRACTION / 解像度: 1.6 Å

PDB-7hkh:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with Z68299550 (DNV2_NS5A-x0248)
手法: X-RAY DIFFRACTION / 解像度: 1.75 Å

PDB-7hki:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with Z68639747 (DNV2_NS5A-x0250)
手法: X-RAY DIFFRACTION / 解像度: 1.75 Å

PDB-7hkj:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with Z71580604 (DNV2_NS5A-x0254)
手法: X-RAY DIFFRACTION / 解像度: 1.72 Å

PDB-7hkk:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with Z802824098 (DNV2_NS5A-x0279)
手法: X-RAY DIFFRACTION / 解像度: 1.66 Å

PDB-7hkl:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with Z818928496 (DNV2_NS5A-x0283)
手法: X-RAY DIFFRACTION / 解像度: 1.88 Å

PDB-7hkm:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with Z851110644 (DNV2_NS5A-x0288)
手法: X-RAY DIFFRACTION / 解像度: 1.63 Å

PDB-7hkn:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with Z952016136 (DNV2_NS5A-x0323)
手法: X-RAY DIFFRACTION / 解像度: 2.43 Å

PDB-7hko:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with Z106579662 (DNV2_NS5A-x0376)
手法: X-RAY DIFFRACTION / 解像度: 1.82 Å

PDB-7hkp:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with Z1198279205 (DNV2_NS5A-x0414)
手法: X-RAY DIFFRACTION / 解像度: 2.12 Å

PDB-7hkq:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with Z1203329531 (DNV2_NS5A-x0428)
手法: X-RAY DIFFRACTION / 解像度: 2.16 Å

PDB-7hkr:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with Z1262617180 (DNV2_NS5A-x0471)
手法: X-RAY DIFFRACTION / 解像度: 1.63 Å

PDB-7hks:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with Z198194394 (DNV2_NS5A-x0612)
手法: X-RAY DIFFRACTION / 解像度: 1.56 Å

PDB-7hkt:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with Z1983897532 (DNV2_NS5A-x0615)
手法: X-RAY DIFFRACTION / 解像度: 1.92 Å

PDB-7hku:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with Z291279160 (DNV2_NS5A-x0741)
手法: X-RAY DIFFRACTION / 解像度: 1.74 Å

PDB-7hkv:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with Z300245038 (DNV2_NS5A-x0749)
手法: X-RAY DIFFRACTION / 解像度: 1.86 Å

PDB-7hkw:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with Z329734230 (DNV2_NS5A-x0789)
手法: X-RAY DIFFRACTION / 解像度: 1.73 Å

PDB-7hkx:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with Z3765495818 (DNV2_NS5A-x0825)
手法: X-RAY DIFFRACTION / 解像度: 1.82 Å

PDB-7hky:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with Z383325512 (DNV2_NS5A-x0829)
手法: X-RAY DIFFRACTION / 解像度: 1.67 Å

PDB-7hkz:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with POB0029 (DNV2_NS5A-x0851)
手法: X-RAY DIFFRACTION / 解像度: 1.66 Å

PDB-7hl0:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with NCL-00023818 (DNV2_NS5A-x0963)
手法: X-RAY DIFFRACTION / 解像度: 2.23 Å

PDB-7hl1:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with Z3241250482 (DNV2_NS5A-x1037)
手法: X-RAY DIFFRACTION / 解像度: 1.66 Å

PDB-7hl2:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with Z3219959731 (DNV2_NS5A-x1046)
手法: X-RAY DIFFRACTION / 解像度: 1.84 Å

PDB-7hl3:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with Z1741972704 (DNV2_NS5A-x1073)
手法: X-RAY DIFFRACTION / 解像度: 1.65 Å

PDB-7hl4:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with HL11 (DNV2_NS5A-x1094)
手法: X-RAY DIFFRACTION / 解像度: 1.78 Å

PDB-7hl5:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with Z44548882 (DNV2_NS5A-x1149)
手法: X-RAY DIFFRACTION / 解像度: 1.63 Å

PDB-7hl6:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with Z31113727 (DNV2_NS5A-x1192)
手法: X-RAY DIFFRACTION / 解像度: 1.6 Å

PDB-7hl7:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with Z48978335 (DNV2_NS5A-x1196)
手法: X-RAY DIFFRACTION / 解像度: 1.66 Å

PDB-7hl8:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with Z57157143 (DNV2_NS5A-x1212)
手法: X-RAY DIFFRACTION / 解像度: 1.86 Å

PDB-7hl9:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with Z53833304 (DNV2_NS5A-x1217)
手法: X-RAY DIFFRACTION / 解像度: 1.65 Å

PDB-7i28:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with Z45527714 (DNV2_NS5A-x0153)
手法: X-RAY DIFFRACTION / 解像度: 1.63 Å

PDB-7i29:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with Z48847594 (DNV2_NS5A-x0162)
手法: X-RAY DIFFRACTION / 解像度: 1.5 Å

PDB-7i2a:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with Z54226095 (DNV2_NS5A-x0176)
手法: X-RAY DIFFRACTION / 解像度: 1.51 Å

PDB-7i2b:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with Z68404778 (DNV2_NS5A-x0249)
手法: X-RAY DIFFRACTION / 解像度: 1.6 Å

PDB-7i2c:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with Z71308235 (DNV2_NS5A-x0253)
手法: X-RAY DIFFRACTION / 解像度: 1.63 Å

PDB-7i2d:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with Z729352906 (DNV2_NS5A-x0258)
手法: X-RAY DIFFRACTION / 解像度: 1.7 Å

PDB-7i2e:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with Z740611958 (DNV2_NS5A-x0264)
手法: X-RAY DIFFRACTION / 解像度: 1.72 Å

PDB-7i2f:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with Z1079168976 (DNV2_NS5A-x0378)
手法: X-RAY DIFFRACTION / 解像度: 2.05 Å

PDB-7i2g:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with Z1079512010 (DNV2_NS5A-x0379)
手法: X-RAY DIFFRACTION / 解像度: 1.85 Å

PDB-7i2h:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with Z1198177230 (DNV2_NS5A-x0411)
手法: X-RAY DIFFRACTION / 解像度: 1.84 Å

PDB-7i2i:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with Z1262628644 (DNV2_NS5A-x0472)
手法: X-RAY DIFFRACTION / 解像度: 1.74 Å

PDB-7i2j:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with Z1269139261 (DNV2_NS5A-x0479)
手法: X-RAY DIFFRACTION / 解像度: 1.98 Å

PDB-7i2k:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with Z1343518214 (DNV2_NS5A-x0503)
手法: X-RAY DIFFRACTION / 解像度: 1.9 Å

PDB-7i2l:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with Z1627772104 (DNV2_NS5A-x0566)
手法: X-RAY DIFFRACTION / 解像度: 2.03 Å

PDB-7i2m:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with Z1639162606 (DNV2_NS5A-x0567)
手法: X-RAY DIFFRACTION / 解像度: 1.78 Å

PDB-7i2n:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with Z1685106505 (DNV2_NS5A-x0571)
手法: X-RAY DIFFRACTION / 解像度: 1.92 Å

PDB-7i2o:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with Z1787627869 (DNV2_NS5A-x0587)
手法: X-RAY DIFFRACTION / 解像度: 1.86 Å

PDB-7i2p:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with Z221421630 (DNV2_NS5A-x0644)
手法: X-RAY DIFFRACTION / 解像度: 1.76 Å

PDB-7i2q:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with Z26333434 (DNV2_NS5A-x0693)
手法: X-RAY DIFFRACTION / 解像度: 2.26 Å

PDB-7i2r:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with Z31432226 (DNV2_NS5A-x0759)
手法: X-RAY DIFFRACTION / 解像度: 1.8 Å

PDB-7i2s:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with Z31721798 (DNV2_NS5A-x0771)
手法: X-RAY DIFFRACTION / 解像度: 1.56 Å

PDB-7i2t:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with Z32327641 (DNV2_NS5A-x0781)
手法: X-RAY DIFFRACTION / 解像度: 1.59 Å

PDB-7i2u:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with Z32665176 (DNV2_NS5A-x0787)
手法: X-RAY DIFFRACTION / 解像度: 1.96 Å

PDB-7i2v:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with Z415636694 (DNV2_NS5A-x0843)
手法: X-RAY DIFFRACTION / 解像度: 1.76 Å

PDB-7i2w:
Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with POB0015 (DNV2_NS5A-x0866)
手法: X-RAY DIFFRACTION / 解像度: 1.75 Å

化合物

ChemComp-ZN:
Unknown entry

ChemComp-MES:
2-(N-MORPHOLINO)-ETHANESULFONIC ACID / 2-モルホリノエタンスルホン酸 / pH緩衝剤*YM

ChemComp-DMS:
DIMETHYL SULFOXIDE / 2-チアプロパン2-オキシド / DMSO, 沈殿剤*YM

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER / ジエチレングリコ-ル

ChemComp-PO4:
PHOSPHATE ION / ホスファ-ト

PDB-1am1:
ATP BINDING SITE IN THE HSP90 MOLECULAR CHAPERONE

ChemComp-HOH:
WATER

ChemComp-CL:
Unknown entry / クロリド

PDB-1ap7:
P19-INK4D FROM MOUSE, NMR, 20 STRUCTURES

ChemComp-8BT:
N-cyclopentylmethanesulfonamide

ChemComp-STV:
~{N}-(1,3-benzodioxol-5-ylmethyl)ethanesulfonamide

PDB-1bdl:
HIV-1 (2:31-37) PROTEASE COMPLEXED WITH INHIBITOR SB203386

PDB-1bdk:
AN NMR, CD, MOLECULAR DYNAMICS, AND FLUOROMETRIC STUDY OF THE CONFORMATION OF THE BRADYKININ ANTAGONIST B-9340 IN WATER AND IN AQUEOUS MICELLAR SOLUTIONS

ChemComp-JOV:
3-chloro-N-(1-hydroxy-2-methylpropan-2-yl)benzamide

ChemComp-TEK:
~{N}-(1-ethylbenzimidazol-2-yl)ethanamide

ChemComp-LQV:
(2S)-N-(5-methylpyridin-2-yl)oxolane-2-carboxamide

PDB-1bdj:
COMPLEX STRUCTURE OF HPT DOMAIN AND CHEY

ChemComp-LJR:
1-cyclohexyl-N-methylmethanesulfonamide

ChemComp-K24:
N,2-dimethyl-1,3-thiazole-5-carboxamide


化合物 画像なし

ChemComp-KBU:
Unknown entry

ChemComp-NUY:
[4-(propan-2-yl)piperazin-1-yl](thiophen-2-yl)methanone

PDB-1bdi:
PURINE REPRESSOR MUTANT-HYPOXANTHINE-PALINDROMIC OPERATOR COMPLEX

PDB-1bdh:
PURINE REPRESSOR MUTANT-HYPOXANTHINE-PALINDROMIC OPERATOR COMPLEX

PDB-1bdf:
STRUCTURE OF ESCHERICHIA COLI RNA POLYMERASE ALPHA SUBUNIT N-TERMINAL DOMAIN

ChemComp-O1M:
4-(4-fluorophenyl)piperazine-1-carboxamide

ChemComp-WMS:
5-fluoro-N-[(2-methyl-1,3-thiazol-5-yl)methyl]pyridin-3-amine

ChemComp-LV4:
1-[2-(trifluoromethyloxy)phenyl]thiourea

ChemComp-O0P:
N-[(3-fluorophenyl)methyl]-N-methylsulfuric diamide

PDB-1aqb:
RETINOL-BINDING PROTEIN (RBP) FROM PIG PLASMA

PDB-1amz:
CHICKEN CITRATE SYNTHASE COMPLEX WITH NITROMETHYLDE-COA AND MALATE

ChemComp-UV7:
N-[(1H-pyrazol-4-yl)methyl]acetamide

PDB-1bdg:
HEXOKINASE FROM SCHISTOSOMA MANSONI COMPLEXED WITH GLUCOSE

ChemComp-PYZ:
4-IODOPYRAZOLE / 4-ヨ-ド-1H-ピラゾ-ル

ChemComp-HV2:
1,1-bis(oxidanylidene)thietan-3-ol / 3-ヒドロキシチエタン1,1-ジオキシド

ChemComp-W3G:
pyridazin-3(2H)-one / ピリダジン-3(2H)-オン

ChemComp-HOW:
1,2-oxazol-3-amine / 3-アミノイソオキサゾ-ル

PDB-1bdm:
THE STRUCTURE AT 1.8 ANGSTROMS RESOLUTION OF A SINGLE SITE MUTANT (T189I) OF MALATE DEHYDROGENASE FROM THERMUS FLAVUS WITH INCREASED ENZYMATIC ACTIVITY

ChemComp-0XM:
1,1-diphenylmethanamine / ベンズヒドリルアミン

PDB-1ajs:
REFINEMENT AND COMPARISON OF THE CRYSTAL STRUCTURES OF PIG CYTOSOLIC ASPARTATE AMINOTRANSFERASE AND ITS COMPLEX WITH 2-METHYLASPARTATE

PDB-1bdn:
CRYSTAL LATTICE PACKING IS IMPORTANT IN DETERMINING THE BEND OF A DNA DODECAMER CONTAINING AN ADENINE TRACT

PDB-1bdo:
STRUCTURE OF THE BIOTINYL DOMAIN OF ACETYL-COENZYME A CARBOXYLASE DETERMINED BY MAD PHASING

ChemComp-T6R:
1-ethyl-1H-benzimidazole / 1-エチル-1H-ベンゾイミダゾ-ル

ChemComp-X0S:
2-chloro-N-methylbenzene-1-sulfonamide

ChemComp-O0J:
N-[4-(2-amino-1,3-thiazol-4-yl)phenyl]acetamide

ChemComp-WLJ:
(azepan-1-yl)(2,6-difluorophenyl)methanone

ChemComp-B1A:
~{N}-(4-phenylazanylphenyl)ethanamide / 4′-(アニリノ)アセトアニリド

PDB-1bzp:
ATOMIC RESOLUTION CRYSTAL STRUCTURE ANALYSIS OF NATIVE DEOXY AND CO MYOGLOBIN FROM SPERM WHALE AT ROOM TEMPERATURE

ChemComp-WHM:
2-[(3-fluorophenyl)methyl]-1lambda~6~,2-thiazolidine-1,1-dione

PDB-1bzq:
COMPLEX OF A DROMEDARY SINGLE-DOMAIN VHH ANTIBODY FRAGMENT WITH RNASE A

ChemComp-YXK:
[1-(2,2,2-trifluoroethyl)-1H-imidazol-2-yl]acetonitrile

ChemComp-UWS:
6-methyl-2-[(3-methyl-1,2-oxazol-5-yl)methyl]pyridazin-3(2H)-one


化合物 画像なし

ChemComp-K6U:
Unknown entry

PDB-1b0n:
SINR PROTEIN/SINI PROTEIN COMPLEX

ChemComp-O3D:
4-[(furan-2-yl)methyl]-1lambda~6~,4-thiazinane-1,1-dione

PDB-1bfu:
SUBTILISIN CARLSBERG IN 20% DIOXANE

PDB-1b0o:
BOVINE BETA-LACTOGLOBULIN COMPLEXED WITH PALMITATE, LATTICE Z

ChemComp-PK4:
2-fluoro-N,3-dimethylbenzene-1-sulfonamide

ChemComp-TQC:
(3M)-5-cyclobutyl-3-(1-methyl-1H-imidazol-2-yl)-1,2,4-oxadiazole

ChemComp-K07:
5-chloro-N-methyl-N-{[(3R)-oxolan-3-yl]methyl}pyrimidin-4-amine

ChemComp-GOL:
GLYCEROL / グリセロ-ル

ChemComp-WKP:
(4-methoxyphenyl)(piperidin-4-yl)methanone

ChemComp-RYM:
4-(benzimidazol-1-ylmethyl)benzenecarbonitrile / 4-(1H-ベンゾイミダゾ-ル-1-イルメチル)ベンゾニトリル

ChemComp-JGP:
(azepan-1-yl)(2H-1,3-benzodioxol-5-yl)methanone

ChemComp-NW4:
3-cyclohexyl-1-(morpholin-4-yl)propan-1-one

ChemComp-JMM:
[4-(cyclopropanecarbonyl)piperazin-1-yl](furan-2-yl)methanone

ChemComp-LQI:
(1-benzofuran-2-yl)(4-methylpiperidin-1-yl)methanone

ChemComp-NY4:
N-{4-[(1S)-1-aminoethyl]phenyl}cyclopropanecarboxamide

PDB-1b0p:
CRYSTAL STRUCTURE OF PYRUVATE-FERREDOXIN OXIDOREDUCTASE FROM DESULFOVIBRIO AFRICANUS

由来
  • dengue virus type 2 (デング熱ウイルス)
キーワードVIRAL PROTEIN / Diamond Light Source / Rutgers University / I04-1 / READDI / Dengue Virus / crystallographic fragment screening / PanDDA / XChemExplorer / cluster4x

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万見文献について

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お知らせ

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2022年2月9日: EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

  • EMDBのヘッダファイルのバージョン3が、公式のフォーマットとなりました。
  • これまでは公式だったバージョン1.9は、アーカイブから削除されます。

関連情報:EMDBヘッダ

外部リンク:wwPDBはEMDBデータモデルのバージョン3へ移行します

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2020年8月12日: 新型コロナ情報

新型コロナ情報

URL: https://pdbj.org/emnavi/covid19.php

新ページ: EM Navigatorに新型コロナウイルスの特設ページを開設しました。

関連情報:Covid-19情報 / 2020年3月5日: 新型コロナウイルスの構造データ

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2020年3月5日: 新型コロナウイルスの構造データ

新型コロナウイルスの構造データ

関連情報:万見生物種 / 2020年8月12日: 新型コロナ情報

外部リンク:COVID-19特集ページ - PDBj / 今月の分子2020年2月:コロナウイルスプロテーアーゼ

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2019年1月31日: EMDBのIDの桁数の変更

EMDBのIDの桁数の変更

  • EMDBエントリに付与されているアクセスコード(EMDB-ID)は4桁の数字(例、EMD-1234)でしたが、間もなく枯渇します。これまでの4桁のID番号は4桁のまま変更されませんが、4桁の数字を使い切った後に発行されるIDは5桁以上の数字(例、EMD-12345)になります。5桁のIDは2019年の春頃から発行される見通しです。
  • EM Navigator/万見では、接頭語「EMD-」は省略されています。

関連情報:Q: 「EMD」とは何ですか? / 万見/EM NavigatorにおけるID/アクセスコードの表記

外部リンク:EMDB Accession Codes are Changing Soon! / PDBjへお問い合わせ

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2017年7月12日: PDB大規模アップデート

PDB大規模アップデート

  • 新バージョンのPDBx/mmCIF辞書形式に基づくデータがリリースされました。
  • 今回の更新はバージョン番号が4から5になる大規模なもので、全エントリデータの書き換えが行われる「Remediation」というアップデートに該当します。
  • このバージョンアップで、電子顕微鏡の実験手法に関する多くの項目の書式が改定されました(例:em_softwareなど)。
  • EM NavigatorとYorodumiでも、この改定に基づいた表示内容になります。

外部リンク:wwPDB Remediation / OneDepデータ基準に準拠した、より強化された内容のモデル構造ファイルが、PDBアーカイブで公開されました。

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万見文献

EMDB/PDB/SASBDBから引用されている文献のデータベース

  • EMDB/PDB/SASBDBのエントリから引用されている文献のデータベースです
  • Pubmedのデータを利用しています

関連情報:EMDB / PDB / SASBDB / 万見 (Yorodumi) / EMN文献 / 新しいEM Navigatorと万見の変更点

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