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Structure paper

TitleA Structural Systems Biology Approach to High-Risk CG23 Klebsiella pneumoniae.
Journal, issue, pagesMicrobiol Resour Announc, Vol. 12, Page e0101322-e0101322, Year 2023
Publish dateJun 15, 2018 (structure data deposition date)
AuthorsInniss, N.L. / Kochan, T.J. / Minasov, G. / Wawrzak, Z. / Chang, C. / Tan, K. / Shuvalova, L. / Kiryukhina, O. / Pshenychnyi, S. / Wu, R. ...Inniss, N.L. / Kochan, T.J. / Minasov, G. / Wawrzak, Z. / Chang, C. / Tan, K. / Shuvalova, L. / Kiryukhina, O. / Pshenychnyi, S. / Wu, R. / Dubrovska, I. / Babnigg, G. / Endres, M. / Anderson, W.F. / Hauser, A.R. / Joachimiak, A. / Satchell, K.J.F.
External linksMicrobiol Resour Announc / PubMed:36695589
MethodsX-ray diffraction
Resolution1.2 - 2.7 Å
Structure data

PDB-6dt3:
1.2 Angstrom Resolution Crystal Structure of Nucleoside Triphosphatase NudI from Klebsiella pneumoniae in Complex with HEPES
Method: X-RAY DIFFRACTION / Resolution: 1.2 Å

PDB-6dux:
2.25 Angstrom Resolution Crystal Structure of 6-phospho-alpha-glucosidase from Klebsiella pneumoniae in Complex with NAD.
Method: X-RAY DIFFRACTION / Resolution: 2.25 Å

PDB-6dvv:
2.25 Angstrom Resolution Crystal Structure of 6-phospho-alpha-glucosidase from Klebsiella pneumoniae in Complex with NAD and Mn2+.
Method: X-RAY DIFFRACTION / Resolution: 2.25 Å

PDB-6dxn:
1.95 Angstrom Resolution Crystal Structure of DsbA Disulfide Interchange Protein from Klebsiella pneumoniae.
Method: X-RAY DIFFRACTION / Resolution: 1.95 Å

PDB-6e85:
1.25 Angstrom Resolution Crystal Structure of 4-hydroxythreonine-4-phosphate Dehydrogenase from Klebsiella pneumoniae.
Method: X-RAY DIFFRACTION / Resolution: 1.25 Å

PDB-6nau:
1.55 Angstrom Resolution Crystal Structure of 6-phosphogluconolactonase from Klebsiella pneumoniae
Method: X-RAY DIFFRACTION / Resolution: 1.55 Å

PDB-6nbg:
2.05 Angstrom Resolution Crystal Structure of Hypothetical Protein KP1_5497 from Klebsiella pneumoniae.
Method: X-RAY DIFFRACTION / Resolution: 2.05 Å

PDB-6ndi:
Crystal Structure of the Sugar Binding Domain of LacI Family Protein from Klebsiella pneumoniae
Method: X-RAY DIFFRACTION / Resolution: 2.6 Å

PDB-6wn5:
1.52 Angstrom Resolution Crystal Structure of Transcriptional Regulator HdfR from Klebsiella pneumoniae
Method: X-RAY DIFFRACTION / Resolution: 1.52 Å

PDB-6wn8:
2.70 Angstrom Resolution Crystal Structure of Uracil Phosphoribosyl Transferase from Klebsiella pneumoniae
Method: X-RAY DIFFRACTION / Resolution: 2.7 Å

PDB-6x1l:
The crystal structure of a functional uncharacterized protein KP1_0663 from Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044
Method: X-RAY DIFFRACTION / Resolution: 2.0 Å

PDB-7rjj:
Crystal Structure of the Peptidoglycan Binding Domain of the Outer Membrane Protein (OmpA) from Klebsiella pneumoniae with bound D-alanine
Method: X-RAY DIFFRACTION / Resolution: 1.88 Å

PDB-7tl5:
Crystal structure of putative hydrolase yjcS from Klebsiella pneumoniae.
Method: X-RAY DIFFRACTION / Resolution: 2.69 Å

PDB-7tzp:
Crystal Structure of Putataive Short-Chain Dehydrogenase/Reductase (FabG) from Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044 in Complex with NADH
Method: X-RAY DIFFRACTION / Resolution: 2.6 Å

Chemicals

ChemComp-EPE:
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID / pH buffer*YM

ChemComp-HOH:
WATER

ChemComp-NAD:
NICOTINAMIDE-ADENINE-DINUCLEOTIDE / NAD*YM

ChemComp-LMR:
(2S)-2-hydroxybutanedioic acid

ChemComp-ACT:
ACETATE ION

ChemComp-GOL:
GLYCEROL

ChemComp-CL:
Unknown entry

ChemComp-BCT:
BICARBONATE ION / pH buffer*YM

ChemComp-MN:
Unknown entry

ChemComp-SO4:
SULFATE ION

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER

ChemComp-PGE:
TRIETHYLENE GLYCOL

ChemComp-NI:
NICKEL (II) ION

ChemComp-FMT:
FORMIC ACID

ChemComp-POP:
PYROPHOSPHATE 2-

ChemComp-B3P:
2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL / pH buffer*YM

ChemComp-PO4:
PHOSPHATE ION

ChemComp-BDF:
beta-D-fructopyranose

ChemComp-DAL:
D-ALANINE

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-K:
Unknown entry

ChemComp-NAI:
1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE

Source
  • klebsiella pneumoniae subsp. pneumoniae ntuh-k2044 (bacteria)
  • klebsiella pneumoniae (bacteria)
  • klebsiella pneumoniae subsp. pneumoniae (bacteria)
KeywordsHYDROLASE / Structural Genomics / Center for Structural Genomics of Infectious Diseases / CSGID / putative NUDIX hydrolase / HEPES / 6-phospho-alpha-glucosidase / NAD / Mn2+ / OXIDOREDUCTASE / DsbA oxidoreductase / Oxidoreductases. / 4-hydroxythreonine-4-phosphate Dehydrogenase / 6-phosphogluconolactonase / UNKNOWN FUNCTION / Hypothetical Protein / SUGAR BINDING PROTEIN / Periplasmic Binding / Sugar Binding / TRANSCRIPTION / Transcriptional Regulator HdfR / TRANSFERASE / Uracil Phosphoribosyl Transferase / uncharacterized / PEPTIDE BINDING PROTEIN / Outer Membrane Protein / BIOSYNTHETIC PROTEIN / FabG / NADH

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