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TitleSnapshots of PLP-substrate and PLP-product external aldimines as intermediates in two types of cysteine desulfurase enzymes.
Journal, issue, pagesFebs J., Year 2019
Publish dateDec 9, 2016 (structure data deposition date)
AuthorsNakamura, R. / Hikita, M. / Ogawa, S. / Takahashi, Y. / Fujishiro, T.
External linksFebs J. / PubMed:31587510
MethodsX-ray diffraction
Resolution1.96 - 3.24 Å
Structure data

PDB-5wt2:
NifS from Helicobacter pylori
Method: X-RAY DIFFRACTION / Resolution: 2.301 Å

PDB-5wt4:
L-Cysteine-PLP intermediate of NifS from Helicobacter pylori
Method: X-RAY DIFFRACTION / Resolution: 2.92 Å

PDB-5zs9:
SufS from Bacillus subtilis in the resting state
Method: X-RAY DIFFRACTION / Resolution: 2.8 Å

PDB-5zsk:
SufS from Bacillus subtilis soaked with L-cysteine for 63 sec
Method: X-RAY DIFFRACTION / Resolution: 3.24 Å

PDB-5zso:
SufS from Bacillus subtilis, soaked with L-cysteine for 90 sec
Method: X-RAY DIFFRACTION / Resolution: 2.7 Å

PDB-5zsp:
NifS from Hydrogenimonas thermophila
Method: X-RAY DIFFRACTION / Resolution: 2.57 Å

PDB-5zst:
NifS from Hydrogenimonas thermopile in a persulfurated form
Method: X-RAY DIFFRACTION / Resolution: 3.1 Å

PDB-6kfz:
SufS from Bacillus subtilis, soaked with L-cysteine for 90 sec at 1.96 angstrom resolution
Method: X-RAY DIFFRACTION / Resolution: 1.96 Å

PDB-6kg0:
NifS from Helicobacter pylori, soaked with L-cysteine for 118 sec
Method: X-RAY DIFFRACTION / Resolution: 2.78 Å

PDB-6kg1:
NifS from Helicobacter pylori, soaked with L-cysteine for 180 sec
Method: X-RAY DIFFRACTION / Resolution: 2.7 Å

Chemicals

ChemComp-PLP:
PYRIDOXAL-5'-PHOSPHATE / Pyridoxal phosphate

ChemComp-IPA:
ISOPROPYL ALCOHOL / alkaloid*YM / Isopropyl alcohol

ChemComp-CL:
Unknown entry / Chloride

ChemComp-HOH:
WATER / Water

ChemComp-C6P:
N-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)-L-CYSTEINE

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER / Diethylene glycol

ChemComp-PDA:
2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-PROPIONIC ACID

Source
  • helicobacter pylori (strain atcc 700392 / 26695) (bacteria)
  • bacillus subtilis (strain 168) (bacteria)
  • hydrogenimonas thermophila (bacteria)
KeywordsTRANSFERASE / Iron-sulfur cluster biogenesis / cysteine desulfurase / BIOSYNTHETIC PROTEIN / iron / sulfur / reaction intermediate

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