[English] 日本語
Yorodumi Papers
- Database of articles cited by EMDB/PDB/SASBDB data -

+
Search query

Keywords
Structure methods
Author
Journal
IF

-
Structure paper

TitleStructure of deformed wing virus, a major honey bee pathogen.
Journal, issue, pagesProc. Natl. Acad. Sci. U.S.A., Vol. 114, Issue 12, Page 3210-3215, Year 2017
Publish dateMar 21, 2017
AuthorsKarel Škubník / Jiří Nováček / Tibor Füzik / Antonín Přidal / Robert J Paxton / Pavel Plevka
External linksPubMed:28270616 / Publisher's page
KeywordsAmino Acid Sequence / Animals / Bees / Capsid / Capsid Proteins / Cryoelectron Microscopy / Image Processing, Computer-Assisted / Insect Viruses / Models, Molecular / Protein Conformation / Protein Domains / RNA Viruses / Virion / VIRAL PROTEIN / PICORNAVIRALES / PICORNAVIRALES IFLAVIRIDAE IFLAVIRUS DWV CAPSID P-DOMAIN JELLYROLL INHIBITOR ANTIVIRAL CATALYTIC SITE PROTEASE LIPASE ESTERASE RECEPTOR / VIRUS / IFLAVIRIDAE / IFLAVIRUS / DWV CAPSID / P JELLYROLL / CATALYTIC SITE PROTEASE / LIPASE ESTERASE RECEPTO / Deformed wing virus / Picornavirales / Iflaviridae / Iflavirus / viral protein / bee pathogen
MethodsEM (single particle) / EM (single particle, icos. sym.) / X-ray diffraction
Resolution1.45 - 3.802 A
Structure data

EMDB-3570:
Structure of deformed wing virus, a honeybee pathogen

EMDB-3574:
Structure of deformed wing virus, a honeybee pathogen

EMDB-3575:
Structure of deformed wing virus, a honeybee pathogen

EMDB-4009:
Structure of deformed wing virus, a honeybee pathogen

EMDB-4014:
Structure of deformed wing virus, a honeybee pathogen

PDB-5g51:
High resolution structure of the part of VP3 protein of Deformed Wing Virus forming P-domain

PDB-5g52:
Crystallographic structure of full particle of Deformed Wing Virus

PDB-5l7q:
Structure of deformed wing virus, a honeybee pathogen

PDB-5l8q:
Structure of deformed wing virus, a honeybee pathogen

PDB-5mup:
Structure of deformed wing virus, a honeybee pathogen

PDB-5mv5:
Structure of deformed wing virus, a honeybee pathogen

PDB-5mv6:
Structure of deformed wing virus, a honeybee pathogen

Chemicals

ChemComp-HOH:
WATERWater

ChemComp-U5P:
URIDINE-5'-MONOPHOSPHATEUridine monophosphate

ChemComp-U:
URIDINE-5'-MONOPHOSPHATEUridine monophosphate

Source
  • Deformed wing virus
  • Apis mellifera (honey bee)
  • deformed wing virus
  • apis mellifera (honey bee)

+
About Yorodumi Papers

-
News

-
Jul 12, 2017. Major update of PDB

Major update of PDB

  • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary. This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated. See below links for details.
  • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software). Now, EM Navigator and Yorodumi are based on the updated data.

External links: wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

-
Jun 16, 2017. Omokage search with filter

Omokage search with filter

  • Result of Omokage search can be filtered by keywords and the database types

Related info.: Omokage search

+
Sep 15, 2016. EM Navigator & Yorodumi renewed

EM Navigator & Yorodumi renewed

  • New versions of EM Navigator and Yorodumi started

Related info.: Changes in new EM Navigator and Yorodumi

+
Aug 31, 2016. New EM Navigator & Yorodumi

New EM Navigator & Yorodumi

  • In 15th Sep 2016, the development versions of EM Navigator and Yorodumi will replace the official versions.
  • Current version will continue as 'legacy version' for some time.

Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator / Yorodumi

+
Apr 13, 2016. Omokage search got faster

Omokage search got faster

  • The computation time became ~1/2 compared to the previous version by re-optimization of data accession
  • Enjoy "shape similarity" of biomolecules, more!

Related info.: Omokage search

Read more

-
Yorodumi Papers

Database of articles cited by EMDB/PDB/SASBDB data

  • Database of articles cited by EMDB, PDB, and SASBDB entries
  • Using PubMed data

Related info.: EMDB / PDB / SASBDB / Yorodumi / EMN Papers / Changes in new EM Navigator and Yorodumi

Read more