[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 3,931 items for (author: zheng & y)

EMDB-64273:
Cryo-EM structure of VTC complex(Vtc5/Vtc4/Vtc3/Vtc1)
Method: single particle / : Zhang J, Du Z, Liu Z

PDB-9umg:
Cryo-EM structure of VTC complex(Vtc5/Vtc4/Vtc3/Vtc1)
Method: single particle / : Zhang J, Du Z, Liu Z

EMDB-61131:
Cryo-EM structure of aPlexinA1-19-43 Fab in complex with PlexinA1 dimer
Method: single particle / : Tian H, Fung CP

PDB-9j4c:
Cryo-EM structure of aPlexinA1-19-43 Fab in complex with PlexinA1 dimer
Method: single particle / : Tian H, Fung CP

EMDB-65163:
herpes simplex virus type 1 helicase-primase structure in complex with ssDNA, ADP and magnesium ion
Method: single particle / : Wu YQ, Jiang ZY, Chen XL, Zheng ZY, Dong CJ

EMDB-66328:
herpes simplex virus type 1 helicase-primase structure in complex with ssDNA, ADP and magnesium ion
Method: single particle / : Wu YQ, Jiang ZY, Chen XL, Zheng ZY, Dong CJ

EMDB-66330:
focused map for HSV-1 helicase-primase in complex with ssDNA, ADP and magnesium
Method: single particle / : Wu YQ, Jiang ZY, Chen XL, Zheng ZY, Dong CJ

PDB-9vlq:
herpes simplex virus type 1 helicase-primase structure in complex with ssDNA, ADP and magnesium ion
Method: single particle / : Wu YQ, Jiang ZY, Chen XL, Zheng ZY, Dong CJ

EMDB-42687:
Mitochondrial ribosome of saccharomyces cerevisiae class II from YEP with Dextrose culture
Method: single particle / : Yu Z, Zheng F, Zhou C

PDB-8ux4:
Mitochondrial ribosome of saccharomyces cerevisiae class II from YEP with Dextrose culture
Method: single particle / : Yu Z, Zheng F, Zhou C

EMDB-65405:
The cryo-EM structure of gRNA-bound SPARDA complex
Method: single particle / : Li Y, Jiang Y, Zheng Q, Li S

EMDB-65406:
Helical structure of gRNA-tDNA SPARDA complex
Method: helical / : Li Y, Zheng Q, Li S, Jiang Y

PDB-9vx1:
The cryo-EM structure of gRNA-bound SPARDA complex
Method: single particle / : Li Y, Jiang Y, Zheng Q, Li S

PDB-9vx6:
Helical structure of gRNA-tDNA SPARDA complex
Method: helical / : Li Y, Zheng Q, Li S, Jiang Y

EMDB-72178:
Cereblon Ternary Complex with Blimp1 and compound 5
Method: single particle / : Watson ER, Lander GC

PDB-9q33:
Cereblon Ternary Complex with Blimp1 and compound 5
Method: single particle / : Watson ER

EMDB-63884:
The 1:1 cryo-EM structure of BAP1/ASXL1-K351Ub in complex with H2AK119Ub nucleosome
Method: single particle / : Ai HS, Liu L

EMDB-71244:
The consensus map of zebrafish TRPM5 with 1mM EDTA and 0.5mM CBTA
Method: single particle / : Ruan Z, Du J, Lu W

EMDB-71245:
The open state of zebrafish TRPM5 with 1mM EDTA and 0.5mM CBTA
Method: single particle / : Ruan Z, Du J, Lu W

EMDB-71246:
Zebrafish TRPM5 with 5mM calcium and 0.5mM CBTA
Method: single particle / : Ruan Z, Du J, Lu W

EMDB-71247:
Zebrafish TRPM5 with 0.2mM calcium
Method: single particle / : Ruan Z, Du J, Lu W, Li Y

EMDB-71248:
Zebrafish TRPM5 with 1uM calcium
Method: single particle / : Ruan Z, Du J, Lu W

EMDB-71249:
Zebrafish TRPM5 with 2uM Ca in GDN detergent
Method: single particle / : Ruan Z, Du J, Lu W

EMDB-71250:
Zebrafish TRPM5 with 5mM EGTA and 0.5mM CBTA
Method: single particle / : Ruan Z, Du J, Lu W

EMDB-71251:
Zebrafish TRPM5 D797A mutant with 5mM calcium
Method: single particle / : Ruan Z, Du J, Lu W

EMDB-71252:
Zebrafish TRPM5 D797A mutant with 5mM calcium and 0.5mM CBTA
Method: single particle / : Ruan Z, Du J, Lu W

EMDB-71253:
Zebrafish TRPM5 D797N mutant with 5mM calcium and 0.5mM CBTA
Method: single particle / : Ruan Z, Du J, Lu W

EMDB-71254:
Zebrafish TRPM5 with 5mM calcium and 0.5mM TPPO
Method: single particle / : Ruan Z, Du J, Lu W

EMDB-71255:
Zebrafish TRPM5 E337A mutant with 5mM calcium and 0.5mM CBTA
Method: single particle / : Ruan Z, Du J, Lu W

EMDB-71256:
Zebrafish TRPM5 Q771A mutant with 5mM calcium and 0.5mM CBTA
Method: single particle / : Ruan Z, Du J, Lu W

EMDB-71257:
Zebrafish TRPM5 Q771A mutant with 5mM calcium
Method: single particle / : Ruan Z, Du J, Lu W

PDB-9p3n:
The open state of zebrafish TRPM5 with 1mM EDTA and 0.5mM CBTA
Method: single particle / : Ruan Z, Du J, Lu W

PDB-9p3o:
Zebrafish TRPM5 with 5mM calcium and 0.5mM CBTA
Method: single particle / : Ruan Z, Du J, Lu W

PDB-9p3p:
Zebrafish TRPM5 with 5mM EGTA and 0.5mM CBTA
Method: single particle / : Ruan Z, Du J, Lu W

PDB-9p3q:
Zebrafish TRPM5 D797A mutant with 5mM calcium
Method: single particle / : Ruan Z, Du J, Lu W

PDB-9p3r:
Zebrafish TRPM5 D797A mutant with 5mM calcium and 0.5mM CBTA
Method: single particle / : Ruan Z, Du J, Lu W

PDB-9p3s:
Zebrafish TRPM5 D797N mutant with 5mM calcium and 0.5mM CBTA
Method: single particle / : Ruan Z, Du J, Lu W

PDB-9p3t:
Zebrafish TRPM5 with 5mM calcium and 0.5mM TPPO
Method: single particle / : Ruan Z, Du J, Lu W

PDB-9p3u:
Zebrafish TRPM5 E337A mutant with 5mM calcium and 0.5mM CBTA
Method: single particle / : Ruan Z, Du J, Lu W

PDB-9p3v:
Zebrafish TRPM5 Q771A mutant with 5mM calcium and 0.5mM CBTA
Method: single particle / : Ruan Z, Du J, Lu W

PDB-9p3w:
Zebrafish TRPM5 Q771A mutant with 5mM calcium
Method: single particle / : Ruan Z, Du J, Lu W

EMDB-62869:
Croy-EM structure of HEV_4 p495 virus-like particle in complex with antibody 6H8
Method: single particle / : Zheng Q, Li S, Yu H, Tang Z, Wen G, Zheng Z, Xia N

EMDB-61420:
The complex structure of Y510-9709 and NET determined with Cryo-EM
Method: single particle / : Jia Y, Gao B, Tan J, Yan C, Zhang W, Lan Y, Xiao Y, Huang Y, Jin Y, Yuan Y, Tian J, Ma W, Zhang Y

EMDB-61426:
The complex structure of 0086-0043 and NET determined with Cryo-EM.
Method: single particle / : Jia YJ, Gao B, Tan JX, Yan CY, Zhang W, Lan YY

PDB-9jel:
The complex structure of Y510-9709 and NET determined with Cryo-EM
Method: single particle / : Jia Y, Gao B, Tan J, Yan C, Zhang W, Lan Y

PDB-9jf3:
The complex structure of 0086-0043 and NET determined with Cryo-EM.
Method: single particle / : Jia YJ, Gao B, Tan JX, Yan CY, Zhang W, Lan YY

EMDB-70760:
Human pannexin 1 channel with 0 mM ATP
Method: single particle / : Ruan Z, Li Y, Du J, Lu W

EMDB-70761:
Human pannexin 1 channel with 10 mM ATP
Method: single particle / : Ruan Z, Li Y, Du J, Lu W

EMDB-70762:
Human pannexin 1 channel with 20 mM ATP
Method: single particle / : Ruan Z, Li Y, Du J, Lu W

EMDB-70763:
Human pannexin 1 channel with 30 mM ATP
Method: single particle / : Ruan Z, Li Y, Du J, Lu W

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more