[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 200 items for (author: zhai & x)

EMDB-63426:
TMEM164-substrate
Method: single particle / : Zhang MF

PDB-9lw1:
TMEM164-substrate
Method: single particle / : Zhang MF

EMDB-64781:
Cryo-EM structure of A. thaliana MET1 with bound SAH
Method: single particle / : Zhang Z, Liu Y, Li W, Du J

EMDB-64782:
Cryo-EM structure of A. thaliana MET1(610-1534) bound covalently to a hemi-mCpG DNA
Method: single particle / : Zhang Z, Li W, Liu Y, Du J

PDB-9v4o:
Cryo-EM structure of A. thaliana MET1 with bound SAH
Method: single particle / : Zhang Z, Liu Y, Li W, Du J

PDB-9v4p:
Cryo-EM structure of A. thaliana MET1(610-1534) bound covalently to a hemi-mCpG DNA
Method: single particle / : Zhang Z, Li W, Liu Y, Du J

EMDB-62179:
Cryo-EM structure of HE30 polymorph 1
Method: helical / : Xia WC, Liu C

EMDB-62180:
Cryo-EM structure of HE30 polymorph 2
Method: helical / : Xia WC, Liu C

PDB-9k8s:
Cryo-EM structure of HE30 polymorph 1
Method: helical / : Xia WC, Liu C

PDB-9k8t:
Cryo-EM structure of HE30 polymorph 2
Method: helical / : Xia WC, Liu C

EMDB-61358:
Human H2BW2 nucleosome
Method: single particle / : Ding DB, Ishibashi T, Nguyen TT

PDB-9jc6:
Human H2BW2 nucleosome
Method: single particle / : Ding DB, Ishibashi T, Nguyen TT

EMDB-60524:
Cryo-EM structure of MRCoV RBD in complex with mink ACE2
Method: single particle / : Ji W, Zhang S

PDB-8zwe:
Cryo-EM structure of MRCoV RBD in complex with mink ACE2
Method: single particle / : Ji W, Zhang S

EMDB-38355:
Structure of the Argonaute protein from Kurthia massiliensis in complex with guide DNA
Method: single particle / : Xin T, Hui D, Shaowen W

EMDB-38409:
Structure of the Argonaute protein from Kurthia massiliensis in complex with guide DNA and 19-mer target DNA
Method: single particle / : Tao X, Ding H, Wu S

EMDB-38414:
Structure of the Argonaute protein from Kurthia massiliensis in complex with guide DNA and 19-mer target DNA in target-cleaved state
Method: single particle / : Tao X, Ding H, Wu S

EMDB-38415:
Structure of the Argonaute protein from Kurthia massiliensis in complex with guide DNA and 19-mer target DNA in target-released state
Method: single particle / : Tao X, Ding H, Wu S

PDB-8xhv:
Structure of the Argonaute protein from Kurthia massiliensis in complex with guide DNA
Method: single particle / : Tao X, Ding H, Wu S

PDB-8xjx:
Structure of the Argonaute protein from Kurthia massiliensis in complex with guide DNA and 19-mer target DNA
Method: single particle / : Tao X, Ding H, Wu S

PDB-8xk3:
Structure of the Argonaute protein from Kurthia massiliensis in complex with guide DNA and 19-mer target DNA in target-cleaved state
Method: single particle / : Tao X, Ding H, Wu S

PDB-8xk4:
Structure of the Argonaute protein from Kurthia massiliensis in complex with guide DNA and 19-mer target DNA in target-released state
Method: single particle / : Tao X, Ding H, Wu S

EMDB-38354:
Cryo-EM structure of free-state KmAgo
Method: single particle / : Tao X, Ding H, Wu S

PDB-8xhs:
Cryo-EM structure of free-state KmAgo
Method: single particle / : Tao X, Ding H, Wu S

EMDB-38408:
Structure of the Argonaute protein from Kurthia massiliensis in complex with guide DNA and 19-mer target RNA
Method: single particle / : Tao X, Ding H, Wu S

EMDB-38412:
Structure of the Argonaute protein from Kurthia massiliensis in complex with guide DNA and 19-mer target DNA in pre-cleavage state
Method: single particle / : Tao X, Hui D, Wu S

PDB-8xjw:
Structure of the Argonaute protein from Kurthia massiliensis in complex with guide DNA and 19-mer target RNA
Method: single particle / : Tao X, Ding H, Wu S

PDB-8xk0:
Structure of the Argonaute protein from Kurthia massiliensis in complex with guide DNA and 19-mer target DNA in pre-cleavage state
Method: single particle / : Tao X, Ding H, Wu S

EMDB-39076:
ATAT-2 bound MEC-12/MEC-7 microtubule
Method: single particle / : Lam WH, Yu D, Zhai Y, Ti S

EMDB-39100:
ATAT-2 bound MEC-12/MEC-7 microtubule without acetyl-CoA
Method: single particle / : Lam WH, Yu D, Zhai Y, Ti S

EMDB-39102:
ATAT-2 bound K40Q MEC-12/MEC-7 microtubule
Method: single particle / : Lam WH, Yu D, Zhai Y, Ti S

EMDB-39105:
ATAT-2 bound K40R MEC-12/MEC-7 microtubule
Method: single particle / : Lam WH, Yu D, Zhai Y, Ti S

PDB-8y9f:
ATAT-2 bound MEC-12/MEC-7 microtubule
Method: single particle / : Lam WH, Yu D, Zhai Y, Ti S

PDB-8yaj:
ATAT-2 bound MEC-12/MEC-7 microtubule without acetyl-CoA
Method: single particle / : Lam WH, Yu D, Zhai Y, Ti S

PDB-8yal:
ATAT-2 bound K40Q MEC-12/MEC-7 microtubule
Method: single particle / : Lam WH, Yu D, Zhai Y, Ti S

PDB-8yar:
ATAT-2 bound K40R MEC-12/MEC-7 microtubule
Method: single particle / : Lam WH, Yu D, Zhai Y, Ti S

EMDB-36148:
Human canonical 601 DNA nucleosome
Method: single particle / : Ding DB, Ishibashi T, Nguyen TT

EMDB-36157:
Human histone H2B variant H2BFWT Cryo-EM structure with 601 DNA sequence
Method: single particle / : Ding DB, Ishibashi T

EMDB-36158:
Human H2BFWTH100R nucleosome with 601 DNA
Method: single particle / : Ding DB, Ishibashi T, Nguyen TT

PDB-8jbx:
Human canonical 601 DNA nucleosome
Method: single particle / : Ding DB, Ishibashi T, Nguyen TT

PDB-8jcc:
Human histone H2B variant H2BFWT Cryo-EM structure with 601 DNA sequence
Method: single particle / : Ding DB, Ishibashi T

PDB-8jcd:
Human H2BFWTH100R nucleosome with 601 DNA
Method: single particle / : Ding DB, Ishibashi T, Nguyen TT

EMDB-37130:
Cryo-EM structure of the human parainfluenza virus hPIV3 L-P polymerase in dimeric form
Method: single particle / : Xie J, Wang L, Zhai G, Wu D, Lin Z, Wang M, Yan X, Gao L, Huang X, Fearns R, Chen S

EMDB-37131:
Cryo-EM structure of the human parainfluenza virus hPIV3 L-P polymerase in monomeric form
Method: single particle / : Xie J, Wang L, Zhai G, Wu D, Lin Z, Wang M, Yan X, Gao L, Huang X, Fearns R, Chen S

PDB-8kdb:
Cryo-EM structure of the human parainfluenza virus hPIV3 L-P polymerase in dimeric form
Method: single particle / : Xie J, Wang L, Zhai G, Wu D, Lin Z, Wang M, Yan X, Gao L, Huang X, Fearns R, Chen S

PDB-8kdc:
Cryo-EM structure of the human parainfluenza virus hPIV3 L-P polymerase in monomeric form
Method: single particle / : Xie J, Wang L, Zhai G, Wu D, Lin Z, Wang M, Yan X, Gao L, Huang X, Fearns R, Chen S

EMDB-38313:
Structure of yeast replisome associated with FACT and histone hexamer, the region of FACT-Histones optimized local map
Method: single particle / : Li N, Gao Y, Yu D, Gao N, Zhai Y

EMDB-38314:
Structure of yeast replisome associated with FACT and histone hexamer,Conformation-2
Method: single particle / : Li N, Gao Y, Yu D, Gao N, Zhai Y

EMDB-38315:
Structure of yeast replisome associated with FACT and histone hexamer, the region of polymerase epsilon optimized local map
Method: single particle / : Li N, Gao Y, Yu D, Gao N, Zhai Y

EMDB-38316:
Structure of yeast replisome associated with FACT and histone hexamer, Conformation-1
Method: single particle / : Li N, Gao Y, Yu D, Gao N, Zhai Y

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more