[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 21,448 items for (author: yu & d)

EMDB-72226:
Rad55-Rad57-SHU bound to ssDNA with AMP-PNP. Local map focused on 55/57
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72228:
Rad55-Rad57-SHU
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72229:
Rad55-Rad57-SHU - Composite map
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72237:
Rad55-Rad57-SHU-Rad51
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72241:
"Rad55-Rad57-SHU-Rad51 - Composite map
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72268:
Rad55-Rad57-SHU homologous recombination complex. Local refinement on Rad55/Rad57
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-72269:
Rad55-Rad57-SHU homologous recombination complex. Local refinement on SHU
Method: single particle / : Yatskevich S, Koo CW, Ciferri C

EMDB-66141:
Cryo-EM structure of the insect sex pheromone receptor ApisOR22-Orco heterocomplex
Method: single particle / : Dong Z, Wang YD, Guan ZY, Wang GR, Yin P

EMDB-66142:
Cryo-EM structure of the insect sex pheromone receptor ApisOR22-Orco heterocomplex bound with nepetalactone in the open state
Method: single particle / : Dong Z, Guan ZY, Wang GR, Yin P

PDB-9wpf:
Cryo-EM structure of the insect sex pheromone receptor ApisOR22-Orco heterocomplex
Method: single particle / : Dong Z, Wang YD, Guan ZY, Wang GR, Yin P

PDB-9wpg:
Cryo-EM structure of the insect sex pheromone receptor ApisOR22-Orco heterocomplex bound with nepetalactone in the open state
Method: single particle / : Dong Z, Guan ZY, Wang GR, Yin P

EMDB-66671:
Local refinement of SARS-CoV-2 KP.3.1.1 RBD with BD57-2704 and AB2-122 Fab
Method: single particle / : Cao YL, Wang YX

PDB-9x9t:
Local refinement of SARS-CoV-2 KP.3.1.1 RBD with BD57-2704 and AB2-122 Fab
Method: single particle / : Cao YL, Wang YX

EMDB-73600:
SARS-CoV-2 SL5 rotated junction
Method: single particle / : Kretsch RC, Xu L, Chiu W, Das R

PDB-9yx9:
SARS-CoV-2 SL5 rotated junction
Method: single particle / : Kretsch RC, Xu L, Chiu W, Das R

EMDB-76291:
Cryo-EM structure of human DDB1-CRBN-GSPT1 in complex with GT19630
Method: single particle / : Huang J, Chu HF, Tong L

PDB-12bp:
Cryo-EM structure of human DDB1-CRBN-GSPT1 in complex with GT19630
Method: single particle / : Huang J, Chu HF, Tong L

EMDB-81330:
Dictyostelium discoideum cytoplasmic dynein motor domain in complex with ADP.Vi (Phi-particle)
Method: single particle / : Shimo-Kon R, Tokita H, Imai H, Maeshima T, Kon T

EMDB-81335:
Dictyostelium discoideum cytoplasmic dynein motor domain in the presence of ADP (ADP state 1)
Method: single particle / : Shimo-Kon R, Tokita H, Imai H, Maeshima T, Kon T

EMDB-81336:
Dictyostelium discoideum cytoplasmic dynein motor domain in the presence of ADP (ADP state 2)
Method: single particle / : Shimo-Kon R, Tokita H, Imai H, Maeshima T, Kon T

EMDB-81337:
Dictyostelium discoideum cytoplasmic dynein motor domain in the presence of ADP (Apo state 1)
Method: single particle / : Shimo-Kon R, Tokita H, Imai H, Maeshima T, Kon T

EMDB-81338:
Dictyostelium discoideum cytoplasmic dynein motor domain in the absence of nucleotide (Apo state 2)
Method: single particle / : Shimo-Kon R, Tokita H, Imai H, Maeshima T, Kon T

PDB-27pt:
Dictyostelium discoideum cytoplasmic dynein motor domain in complex with ADP.Vi (Phi-particle)
Method: single particle / : Shimo-Kon R, Tokita H, Imai H, Maeshima T, Kon T

PDB-27py:
Dictyostelium discoideum cytoplasmic dynein motor domain in the presence of ADP (ADP state 1)
Method: single particle / : Shimo-Kon R, Tokita H, Imai H, Maeshima T, Kon T

PDB-27pz:
Dictyostelium discoideum cytoplasmic dynein motor domain in the presence of ADP (ADP state 2)
Method: single particle / : Shimo-Kon R, Tokita H, Imai H, Maeshima T, Kon T

PDB-27qa:
Dictyostelium discoideum cytoplasmic dynein motor domain in the presence of ADP (Apo state 1)
Method: single particle / : Shimo-Kon R, Tokita H, Imai H, Maeshima T, Kon T

PDB-27qb:
Dictyostelium discoideum cytoplasmic dynein motor domain in the absence of nucleotide (Apo state 2)
Method: single particle / : Shimo-Kon R, Tokita H, Imai H, Maeshima T, Kon T

EMDB-68398:
Cryo-EM structure of the BTNL3-BTNL8-TCR complex
Method: single particle / : Dong D, Zhu Y, Huang Z

PDB-22kk:
Cryo-EM structure of the BTNL3-BTNL8-TCR complex
Method: single particle / : Dong D, Zhu Y, Huang Z

EMDB-80301:
Cryo-EM structure of TasH-tigRNA-MM1 dsDNA complex
Method: single particle / : Zhang H, Liu Z

EMDB-80302:
Cryo-EM structure of TasH-tigRNA-MM5 dsDNA complex
Method: single particle / : Zhang H, Liu Z

PDB-25qk:
Cryo-EM structure of TasH-tigRNA-MM1 dsDNA complex
Method: single particle / : Zhang H, Liu Z

PDB-25ql:
Cryo-EM structure of TasH-tigRNA-MM5 dsDNA complex
Method: single particle / : Zhang H, Liu Z

EMDB-48771:
Cryo-EM Structure of Apo SeAvs7
Method: single particle / : Zhang J, Feng L

EMDB-48772:
Cryo-EM structure of SeAvs7 MCP EFTu1 monomeric complex
Method: single particle / : Zhang J, Feng L

EMDB-73001:
Cryo-EM structure of SeAvs7 MCP EFTu1 tetrameric complex
Method: single particle / : Zhang J, Feng L

EMDB-73002:
Cryo-EM structure of SeAvs7 MCP EFTu1 monomeric complex-Map B
Method: single particle / : Zhang J, Feng L

EMDB-73003:
Cryo-EM structure of SeAvs7 MCP EFTu1 tetrameric complex -Map A
Method: single particle / : Zhang J, Feng L

EMDB-73004:
Cryo-EM structure of SeAvs7 MCP EFTu1 tetrameric complex-Map E
Method: single particle / : Zhang J, Feng L

EMDB-73005:
Cryo-EM structure of SeAvs7 MCP EFTu1 tetrameric complex-Map D
Method: single particle / : Zhang J, Feng L

EMDB-73006:
Cryo-EM structure of SeAvs7 MCP EFTu1 tetrameric complex-Map C
Method: single particle / : Zhang J, Feng L

PDB-9n00:
Cryo-EM Structure of Apo SeAvs7
Method: single particle / : Zhang J, Feng L

PDB-9n01:
Cryo-EM structure of SeAvs7 MCP EFTu1 monomeric complex
Method: single particle / : Zhang J, Feng L

PDB-9yix:
Cryo-EM structure of SeAvs7 MCP EFTu1 tetrameric complex
Method: single particle / : Zhang J, Feng L

EMDB-53206:
GABA-A receptor a3b3g2 + a3NB83(PAM) + GABA
Method: single particle / : Miller PS, Gonzalez-Prada JE

EMDB-53207:
GABA-A receptor a3b3 (1:4) + a3NB77(silent) + b3Mb125 + GABA
Method: single particle / : Miller PS, Gonzalez-Prada JE

EMDB-53208:
GABA-A receptor a2b3 (1:4) + a2NB29(near-silent) + b3Mb125 + GABA
Method: single particle / : Miller PS, Gonzalez-Prada JE

EMDB-53209:
GABA-A receptor a2b3 (1:4) + a2NB16(silent) + b3Mb125 + GABA
Method: single particle / : Miller PS, Gonzalez-Prada JE

EMDB-53212:
GABA-A receptor a2b3 (1:4) + a2NB47(silent) + b3Mb125 + GABA
Method: single particle / : Miller PS, Gonzalez-Prada JE

EMDB-53213:
GABA-A receptor a2b3g2 + a2NB00(PAM) + GABA
Method: single particle / : Miller PS, Gonzalez-Prada JE

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more