[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 48 items for (author: xin & fj)

EMDB-48671:
C6 Herpes Virus Simplex Neutralizing Nanobody Bound to HSV Glycoprotein gB
Method: single particle / : Viadiu H, Abernathy E, Lee CV, Hung M, Yu Y, Xing W, Yu X

EMDB-48677:
D1 Herpes Virus Simplex Neutralizing Nanobody Bound to HSV Glycoprotein gB
Method: single particle / : Viadiu H, Abernathy E, Lee CV, Hung M, Yu Y, Xing W, Yu X

EMDB-48730:
D7 Herpes Virus Simplex Neutralizing Nanobody Bound to HSV Glycoprotein gD
Method: single particle / : Viadiu H, Abernathy E, Lee CV, Hung M, Yu Y, Xing W, Yu X

EMDB-63544:
Enhancing the synthesis efficiency of galacto-oligosaccharides of a beta-galactosidase from Paenibacillus barengoltzii by engineering the active and distal sites
Method: single particle / : Yu HY, Wang YL, Yang ZS, Liu X, Xin FJ

EMDB-39188:
Cryo-EM structure of human respiratory syncytial virus fusion protein variant
Method: single particle / : Li QM, Su JG, Zhang J, Liang Y, Shao S, Li XY, Zhao ZX

EMDB-29370:
LBD conformation 1 (LBDconf1) of GluA2 flip Q isoform of AMPA receptor in complex with gain-of-function TARP gamma-2, with 500mM NaCl, 330uM CTZ, and 100mM glutamate (Open-Na610)
Method: single particle / : Nakagawa T

EMDB-29371:
LBD conformation 2 (LBDconf2) of GluA2 flip Q isoform of AMPA receptor in complex with gain-of-function TARP gamma-2, with 500mM NaCl, 330uM CTZ, and 100mM glutamate (Open-Na610)
Method: single particle / : Nakagawa T

EMDB-29372:
LBD conformation 3 (LBDconf3) of GluA2 flip Q isoform of AMPA receptor in complex with gain-of-function TARP gamma-2, with 500mM NaCl, 330uM CTZ, and 100mM glutamate (Open-Na610)
Method: single particle / : Nakagawa T

EMDB-29381:
LBD conformation 2 (LBDconf2) of GluA2 flip Q isoform of AMPA receptor in complex with gain-of-function TARP gamma2, with 140mM NMDG, 330uM CTZ, and 100mM L-glutamate (Open-Na110)
Method: single particle / : Nakagawa T

EMDB-29359:
GluA2 flip Q isoform of AMPA receptor in complex with gain-of-function TARP gamma-2, with 500mM NaCl, 330uM CTZ, and 100mM glutamate (Open-Na610)
Method: single particle / : Nakagawa T

EMDB-29360:
GluA2 flip Q isoform of AMPA receptor in complex with gain-of-function TARP gamma-2, with 10mM CaCl2, 150mM NaCl, 1mM MgCl2, 330uM CTZ, and 100mM glutamate (Open-CaNaMg)
Method: single particle / : Nakagawa T

EMDB-29361:
Conformation 1 of the ligand binding domain (LBDconf1) of GluA2 flip Q isoform of AMPA receptor in complex with gain-of-function TARP gamma-2, with 10mM CaCl2, 150mM NaCl, 1mM MgCl2, 330uM CTZ, and 100mM glutamate (Open-CaNaMg)
Method: single particle / : Nakagawa T

EMDB-29363:
GluA2 flip Q isoform of AMPA receptor in complex with gain-of-function TARP gamma-2, with 10mM CaCl2, 150mM NaCl, 1mM MgCl2, 330uM CTZ, and 100uM CNQX (Closed-CaNaMg)
Method: single particle / : Nakagawa T

EMDB-29364:
Conformation 2 of the ligand binding domain (LBDconf2) of GluA2 flip Q isoform of AMPA receptor in complex with gain-of-function TARP gamma-2, with 10mM CaCl2, 150mM NaCl, 1mM MgCl2, 330uM CTZ, and 100mM glutamate (Open-CaNaMg)
Method: single particle / : Nakagawa T

EMDB-29367:
LBD conformation 1 of GluA2 flip Q isoform of AMPA receptor in complex with gain-of-function TARP gamma-2, with 10mM CaCl2, 150mM NaCl, 1mM MgCl2, 330uM CTZ, and 100uM CNQX (Closed-CaNaMg)
Method: single particle / : Nakagawa T

EMDB-29368:
LBD conformation 2 (LBDconf2) of GluA2 flip Q isoform of AMPA receptor in complex with gain-of-function TARP gamma-2, with 10mM CaCl2, 150mM NaCl, 1mM MgCl2, 330uM CTZ, and 100uM CNQX (Closed-CaNaMg)
Method: single particle / : Nakagawa T

EMDB-29369:
GluA2 flip Q isoform N619K mutant of AMPA receptor in complex with gain-of-function TARP gamma-2, with 10mM CaCl2, 150mM NaCl, 1mM MgCl2, 330uM CTZ, and 100mM glutamate (Open-CaNaMg/N619K)
Method: single particle / : Nakagawa T

EMDB-29373:
GluA2 flip Q isoform of AMPA receptor in complex with gain-of-function TARP gamma2, with 150mM CaCl2, 330uM CTZ, and 100mM L-glutamate (Open-Ca150)
Method: single particle / : Nakagawa T

EMDB-29375:
LBD conformation 1 (LBDconf1) of GluA2 flip Q isoform N619K mutant of AMPA receptor in complex with gain-of-function TARP gamma-2, with 10mM CaCl2, 150mM NaCl, 1mM MgCl2, 330uM CTZ, and 100mM glutamate (Open-CaNaMg/N619K)
Method: single particle / : Nakagawa T

EMDB-29376:
LBD conformation 2 (LBDconf2) of GluA2 flip Q isoform N619K mutant of AMPA receptor in complex with gain-of-function TARP gamma-2, with 10mM CaCl2, 150mM NaCl, 1mM MgCl2, 330uM CTZ, and 100mM glutamate (Open-CaNaMg/N619K)
Method: single particle / : Nakagawa T

EMDB-29378:
GluA2 flip Q isoform of AMPA receptor in complex with gain-of-function TARP gamma2, with 140mM NMDG, 330uM CTZ, and 100mM L-glutamate (Open-Na110)
Method: single particle / : Nakagawa T

EMDB-29379:
LBD of GluA2 flip Q isoform of AMPA receptor in complex with gain-of-function TARP gamma2, with 150mM CaCl2, 330uM CTZ, and 100mM L-glutamate (Open-Ca150)
Method: single particle / : Nakagawa T

EMDB-29380:
LBD conformation 1 (LBDconf1) of GluA2 flip Q isoform of AMPA receptor in complex with gain-of-function TARP gamma2, with 140mM NMDG, 330uM CTZ, and 100mM L-glutamate (Open-Na110)
Method: single particle / : Nakagawa T

EMDB-29382:
GluA2 flip Q isoform of AMPA receptor in complex with gain-of-function TARP gamma2, with 10mM CaCl2, 140mM NMDG, 330uM CTZ, and 100mM L-glutamate (Open-Ca10)
Method: single particle / : Nakagawa T

EMDB-29384:
LBD conformation 1 (LBDconf1) of GluA2 flip Q isoform of AMPA receptor in complex with gain-of-function TARP gamma2, with 10mM CaCl2, 140mM NMDG, 330uM CTZ, and 100mM L-glutamate (Open-Ca10)
Method: single particle / : Nakagawa T

EMDB-29385:
LBD conformation 2 (LBDconf2) of GluA2 flip Q isoform of AMPA receptor in complex with gain-of-function TARP gamma2, with 10mM CaCl2, 140mM NMDG, 330uM CTZ, and 100mM L-glutamate (Open-Ca10)
Method: single particle / : Nakagawa T

EMDB-29386:
GluA2 flip Q isoform of AMPA receptor in complex with gain-of-function TARP gamma-2, with 150mM NaCl, 330uM CTZ, and 100mM glutamate (Open-Na260)
Method: single particle / : Nakagawa T

EMDB-29387:
LBD conformation 1 (LBDconf1) of GluA2 flip Q isoform of AMPA receptor in complex with gain-of-function TARP gamma-2, with 150mM NaCl, 330uM CTZ, and 100mM glutamate (Open-Na260)
Method: single particle / : Nakagawa T

EMDB-29388:
LBD conformation 2 (LBDconf2) of GluA2 flip Q isoform of AMPA receptor in complex with gain-of-function TARP gamma-2, with 150mM NaCl, 330uM CTZ, and 100mM glutamate (Open-Na260)
Method: single particle / : Nakagawa T

EMDB-29394:
LBD conformation 3 (LBDconf3) of GluA2 flip Q isoform of AMPA receptor in complex with gain-of-function TARP gamma-2, with 150mM NaCl, 330uM CTZ, and 100mM glutamate (Open-Na260)
Method: single particle / : Nakagawa T

EMDB-35913:
Cryo-EM structure of the 3-OH-C12-bound GPR84 receptor-Gi complex
Method: single particle / : Liu H, Yin W, Xu HE

EMDB-35914:
Cryo-EM structure of the LY237-bound GPR84 receptor-Gi complex
Method: single particle / : Liu H, Yin W, Xu HE

EMDB-35915:
Cryo-EM structure of the GPR84 receptor-Gi complex with no ligand modeled
Method: single particle / : Liu H, Yin W, Xu HE

EMDB-40422:
Cryo-EM Structure of RyR1
Method: single particle / : Cholak S, Saville JW, Zhu X, Berezuk AM, Tuttle KS, Haji-Ghassemi O, Van Petegem F, Subramaniam S

EMDB-40423:
Cryo-EM Structure of RyR1 + ATP-gamma-S
Method: single particle / : Cholak S, Saville JW, Zhu X, Berezuk AM, Tuttle KS, Haji-Ghassemi O, Van Petegem F, Subramaniam S

EMDB-40424:
Cryo-EM Structure of RyR1 + ADP
Method: single particle / : Cholak S, Saville JW, Zhu X, Berezuk AM, Tuttle KS, Haji-Ghassemi O, Van Petegem F, Subramaniam S

EMDB-40425:
Cryo-EM Structure of RyR1 + AMP
Method: single particle / : Cholak S, Saville JW, Zhu X, Berezuk AM, Tuttle KS, Haji-Ghassemi O, Van Petegem F, Subramaniam S

EMDB-40426:
Cryo-EM Structure of RyR1 + Adenosine
Method: single particle / : Cholak S, Saville JW, Zhu X, Berezuk AM, Tuttle KS, Haji-Ghassemi O, Van Petegem F, Subramaniam S

EMDB-40427:
Cryo-EM Structure of RyR1 + Adenine
Method: single particle / : Cholak S, Saville JW, Zhu X, Berezuk AM, Tuttle KS, Haji-Ghassemi O, Van Petegem F, Subramaniam S

EMDB-40428:
Cryo-EM Structure of RyR1 + cAMP
Method: single particle / : Cholak S, Saville JW, Zhu X, Berezuk AM, Tuttle KS, Haji-Ghassemi O, Van Petegem F, Subramaniam S

EMDB-40429:
Cryo-EM Structure of RyR1 (Local Refinement of TMD)
Method: single particle / : Cholak S, Saville JW, Zhu X, Berezuk AM, Tuttle KS, Haji-Ghassemi O, Van Petegem F, Subramaniam S

EMDB-40430:
Cryo-EM Structure of RyR1 + ATP-gamma-S (Local Refinement of TMD)
Method: single particle / : Cholak S, Saville JW, Zhu X, Berezuk AM, Tuttle KS, Haji-Ghassemi O, Van Petegem F, Subramaniam S

EMDB-40431:
Cryo-EM Structure of RyR1 + ADP (Local Refinement of TMD)
Method: single particle / : Cholak S, Saville JW, Zhu X, Berezuk AM, Tuttle KS, Haji-Ghassemi O, Van Petegem F, Subramaniam S

EMDB-40432:
Cryo-EM Structure of RyR1 + AMP (Local Refinement of TMD)
Method: single particle / : Cholak S, Saville JW, Zhu X, Berezuk AM, Tuttle KS, Haji-Ghassemi O, Van Petegem F, Subramaniam S

EMDB-40433:
Cryo-EM Structure of RyR1 + Adenosine (Local Refinement of TMD)
Method: single particle / : Cholak S, Saville JW, Zhu X, Berezuk AM, Tuttle KS, Haji-Ghassemi O, Van Petegem F, Subramaniam S

EMDB-40434:
Cryo-EM Structure of RyR1 + Adenine (Local Refinement of TMD)
Method: single particle / : Cholak S, Saville JW, Zhu X, Berezuk AM, Tuttle KS, Haji-Ghassemi O, Van Petegem F, Subramaniam S

EMDB-40435:
Cryo-EM Structure of RyR1 + cAMP (Local Refinement of TMD)
Method: single particle / : Cholak S, Saville JW, Zhu X, Berezuk AM, Tuttle KS, Haji-Ghassemi O, Van Petegem F, Subramaniam S

EMDB-22143:
Cryo-EM structure of NusG-CTD bound to 70S ribosome
Method: single particle / : Washburn R, Zuber P

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more