[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 131 items for (author: woo & ej)

EMDB-64749:
Structure of C5a anaphylatoxin chemotactic receptor 2, C5aR2 in the Apo state
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

EMDB-64751:
Structure of C5a anaphylatoxin chemotactic receptor 2, C5aR2 bound to EP54
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

EMDB-64752:
Structure of C5a anaphylatoxin chemotactic receptor 2, C5aR2 bound to C5a
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

EMDB-64761:
Structure of C5a anaphylatoxin chemotactic receptor 2, C5aR2 bound to C5a-pep
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

EMDB-64777:
Structure of C5a anaphylatoxin chemotactic receptor 2, C5aR2 bound to R8Y
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

EMDB-65890:
Structure of mC5aR2 in complex with mC5a-desArg
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

EMDB-80132:
Structure of mC5aR2 in complex with mC5a-desArg (Monomer)
Method: single particle / : Tiwari D, Ganguly M, Banerjee R, Shukla AK, Mishra S, Dalal A, Nureki O

PDB-25if:
Structure of mC5aR2 in complex with mC5a-desArg (Monomer)
Method: single particle / : Tiwari D, Ganguly M, Banerjee R, Shukla AK

PDB-9v35:
Structure of C5a anaphylatoxin chemotactic receptor 2, C5aR2 in the Apo state
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

PDB-9v38:
Structure of C5a anaphylatoxin chemotactic receptor 2, C5aR2 bound to EP54
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

PDB-9v3c:
Structure of C5a anaphylatoxin chemotactic receptor 2, C5aR2 bound to C5a
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

PDB-9v3y:
Structure of C5a anaphylatoxin chemotactic receptor 2, C5aR2 bound to C5a-pep
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

PDB-9v4d:
Structure of C5a anaphylatoxin chemotactic receptor 2, C5aR2 bound to R8Y
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

PDB-9wdi:
Structure of mC5aR2 in complex with mC5a-desArg
Method: single particle / : Tiwari D, Sano FK, Yadav MK, Sawada K, Ganguly M, Mishra S, Dalal A, Banerjee R, Nureki O, Shukla AK

EMDB-80237:
A complex of PTH1R/Gs bound to a PTHrP analogue with five beta-amino acids
Method: single particle / : Cary BP, Wootten D, Sexton PM, Gellman SH, Wook TK, Shin J, Gerrard EJ

EMDB-80238:
A complex of PTH1R/Gs bound to a PTHrP analogue with three beta-amino acids
Method: single particle / : Cary BP, Wootten D, Sexton PM, Gellman SH, Wook TK, Shin J, Gerrard EJ

EMDB-68747:
Structure of CXCR4 in complex with a de-novo designed mini-protein antagonist
Method: single particle / : Banerjee R, Ganguly M, Banerjee N, Tiwari D, Muratspahic E, Baker D, Shukla AK

PDB-22xc:
Structure of CXCR4 in complex with a de-novo designed mini-protein antagonist
Method: single particle / : Banerjee R, Ganguly M, Banerjee N, Tiwari D, Muratspahic E, Baker D, Shukla AK

EMDB-54194:
ZZ1-SO2H-induced assembly of the YPEL5-CTLH E3 ligase and BRD4(BD1) neosubstrate
Method: single particle / : Chrustowicz J, Schulman BA

EMDB-54215:
Ternary complex of an improved charged molecular glue degrader ZZ2-SO2H, BRD4(BD1) neosubstrate, and the CTLH E3 ligase receptor module YPEL5-WDR26
Method: single particle / : Chrustowicz J, Schulman BA

EMDB-54216:
Ternary complex of a charged molecular glue degrader ZZ1-SO2H, BRD4(BD1) neosubstrate, and the CTLH E3 ligase receptor module YPEL5-WDR26
Method: single particle / : Chrustowicz J, Schulman BA

PDB-9rsc:
Ternary complex of an improved charged molecular glue degrader ZZ2-SO2H, BRD4(BD1) neosubstrate, and the CTLH E3 ligase receptor module YPEL5-WDR26
Method: single particle / : Chrustowicz J, Schulman BA

PDB-9rsd:
Ternary complex of a charged molecular glue degrader ZZ1-SO2H, BRD4(BD1) neosubstrate, and the CTLH E3 ligase receptor module YPEL5-WDR26
Method: single particle / : Chrustowicz J, Schulman BA

EMDB-74020:
Structure of E. Coli DNA protection during starvation protein (DPS) from single particle cryoEM
Method: single particle / : Sibert BS, Parrell D, Yang JE, Kumar A, Larson MR, Montemayor EJ, Maindola P, Cai K, Wright ER

EMDB-47447:
Glucagon Like Peptide Receptor-1 (GLP1R) A316T mutant with GLP-1 peptide. Dominant negative Gs complex.
Method: single particle / : Deane-Alder K, Belousoff MJ, Wootten DL

PDB-9e2a:
Glucagon Like Peptide Receptor-1 (GLP1R) A316T mutant with GLP-1 peptide. Dominant negative Gs complex.
Method: single particle / : Deane-Alder K, Belousoff MJ, Wootten DL

EMDB-47268:
Ternary complex of CRBN-DDB1-PPIL4 RRM domain with FPFT-2216
Method: single particle / : Baek K, Fischer ES

EMDB-47269:
Ternary complex of CRBN-DDB1-PDE6D with FPFT-2216
Method: single particle / : Baek K, Fischer ES

EMDB-47270:
Ternary complex of CRBN-DDB1-PDE6D with FPFT-2216 local refinement
Method: single particle / : Baek K, Fischer ES

PDB-9dwv:
Ternary complex of CRBN-DDB1-PPIL4 RRM domain with FPFT-2216
Method: single particle / : Baek K, Fischer ES

PDB-9dww:
Ternary complex of CRBN-DDB1-PDE6D with FPFT-2216
Method: single particle / : Baek K, Fischer ES

EMDB-43648:
Kappa opioid receptor:Galphai protein in complex with inverse agonist JDTic, Original map receptor
Method: single particle / : Gati C, Motiwala Z, Tyson AS, Styrpejko D, Han GW, Khan S, Ramos-Gonzalez N, Shenvi R, Majumdar S

EMDB-43649:
Kappa opioid receptor:Galphai protein in complex with inverse agonist JDTic, Original map G protein
Method: single particle / : Gati C, Motiwala Z, Tyson AS, Styrpejko D, Han GW, Khan S, Ramos-Gonzalez N, Shenvi R, Majumdar S

EMDB-43652:
Kappa opioid receptor:Galphai protein in complex with inverse agonist norBNI, Original map G protein
Method: single particle / : Gati C, Motiwala Z, Tyson AS, Styrpejko D, Han GW, Khan S, Ramos-Gonzalez N, Shenvi R, Majumdar S

EMDB-43653:
Kappa opioid receptor:Galphai protein in complex with inverse agonist GB18, Original map receptor
Method: single particle / : Gati C, Motiwala Z, Tyson AS, Styrpejko D, Han GW, Khan S, Ramos-Gonzalez N, Shenvi R, Majumdar S

EMDB-43654:
Kappa opioid receptor:Galphai protein in complex with inverse agonist GB18, Original map G protein
Method: single particle / : Gati C, Motiwala Z, Tyson AS, Styrpejko D, Han GW, Khan S, Ramos-Gonzalez N, Shenvi R, Majumdar S

EMDB-43556:
Kappa opioid receptor:Galphai protein in complex with inverse agonist norBNI
Method: single particle / : Gati C, Motiwala Z, Tyson AS, Styrpejko D, Han GW, Khan S, Ramos-Gonzalez N, Shenvi R, Majumdar S

EMDB-43557:
Kappa opioid receptor:Galphai protein in complex with inverse agonist JDTic
Method: single particle / : Gati C, Motiwala Z, Tyson AS, Styrpejko D, Han GW, Khan S, Ramos-Gonzalez N, Shenvi R, Majumdar S

EMDB-43558:
Kappa opioid receptor in complex with heterotrimerig Gi protein, bound to inverse agonist GB18
Method: single particle / : Gati C, Motiwala Z, Tyson AS, Styrpejko D, Han GW, Khan S, Ramos-Gonzalez N, Shenvi R, Majumdar S

EMDB-46585:
Kappa opioid receptor:Galphai protein in complex with inverse agonist JDTic , no scFv16
Method: single particle / : Gati C, Motiwala Z, Tyson AS, Styrpejko D, Han GW, Khan S, Ramos-Gonzalez N, Shenvi R, Majumdar S

PDB-8vve:
Kappa opioid receptor:Galphai protein in complex with inverse agonist norBNI
Method: single particle / : Gati C, Motiwala Z, Tyson AS, Styrpejko D, Han GW, Khan S, Ramos-Gonzalez N, Shenvi R, Majumdar S

PDB-8vvf:
Kappa opioid receptor:Galphai protein in complex with inverse agonist JDTic
Method: single particle / : Gati C, Motiwala Z, Tyson AS, Styrpejko D, Han GW, Khan S, Ramos-Gonzalez N, Shenvi R, Majumdar S

PDB-8vvg:
Kappa opioid receptor in complex with heterotrimerig Gi protein, bound to inverse agonist GB18
Method: single particle / : Gati C, Motiwala Z, Tyson AS, Styrpejko D, Han GW, Khan S, Ramos-Gonzalez N, Shenvi R, Majumdar S

PDB-9d61:
Kappa opioid receptor:Galphai protein in complex with inverse agonist JDTic , no scFv16
Method: single particle / : Gati C, Motiwala Z, Tyson AS, Styrpejko D, Han GW, Khan S, Ramos-Gonzalez N, Shenvi R, Majumdar S

EMDB-43386:
The Cryo-EM structure of LSD1-CoREST-HDAC1 in complex with KBTBD4 enhanced by UM171 and IP6
Method: single particle / : Xie X, Mao H, Liau B, Zheng N

PDB-8voj:
The Cryo-EM structure of LSD1-CoREST-HDAC1 in complex with KBTBD4 enhanced by UM171 and IP6
Method: single particle / : Xie X, Mao H, Liau B, Zheng N

EMDB-47155:
The cryo-EM structure of apo KBTBD4
Method: single particle / : Xie X, Mao H, Liau B, Zheng N

PDB-9dtg:
The cryo-EM structure of apo KBTBD4
Method: single particle / : Xie X, Mao H, Liau B, Zheng N

EMDB-52014:
Recombinant tau PHF filaments (peptide synthesis 291-391)
Method: helical / : Lovestam S

PDB-9hbb:
Recombinant tau PHF filaments (peptide synthesis 291-391)
Method: helical / : Lovestam S

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more