[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 336 items for (author: weiss & g)

EMDB-72725:
Cryo-EM structure of ternary complex BCL6-CRBN-DDB1 with BMS-986458 (local refined), a potent and selective BCL6 ligand directed degrader (LDD)
Method: single particle / : Zhu J, Fang W, Pagarigan B

PDB-9ya9:
Cryo-EM structure of ternary complex BCL6-CRBN-DDB1 with BMS-986458 (local refined), a potent and selective BCL6 ligand directed degrader (LDD)
Method: single particle / : Zhu J, Fang W, Pagarigan B

EMDB-52774:
Cryo-electron tomogram of cryo-FIB milled Nostoc PCC7120 wild-type
Method: electron tomography / : Mueller T, Kleusberg FM, Roganowicz K, Weiss G, Coles M, Selim KA

EMDB-52775:
Cryo-electron tomogram of cryo-FIB milled Nostoc PCC7120 cseKO
Method: electron tomography / : Mueller T, Kleusberg FM, Roganowicz K, Weiss G, Coles M, Selim KA

EMDB-52776:
Cryo-electron tomogram of cryo-FIB milled Nostoc PCC7120 cse KO
Method: electron tomography / : Mueller T, Kleusberg FM, Roganowicz K, Weiss G, Coles M, Selim KA

EMDB-54078:
Structure of BAF in complex with OCT4-SOX2-bound nucleosome - SHL+6 class 2
Method: single particle / : Vecchia L, Weiss J, Cavadini S, Kempf G, Kater L, Pathare G, Thoma NH

EMDB-54157:
Structure of BAF in complex with OCT4-SOX2-bound nucleosome - SHL+6 class 2 (Consensus map)
Method: single particle / : Vecchia L, Weiss J, Cavadini S, Kempf G, Kater L, Pathare GR, Thoma NH

EMDB-54158:
Structure of BAF in complex with OCT4-SOX2-bound nucleosome - SHL+6 class 2 (Focused refinement of BAF part)
Method: single particle / : Vecchia L, Weiss J, Cavadini S, Kempf G, Kater L, Pathare GR, Thoma NH

PDB-9rn2:
Structure of BAF in complex with OCT4-SOX2-bound nucleosome - SHL+6 class 2
Method: single particle / : Vecchia L, Weiss J, Cavadini S, Kempf G, Kater L, Pathare G, Thoma NH

EMDB-54156:
Structure of BAF-nucleosome complex with OCT4-SOX2 at SHL+6 in ADP-bound state, BAF47 bound to ATPase lobe 2 (Focused refinement of BAF)
Method: single particle / : Domjan D, Weiss J, Cavadini S, Vecchia L, Kempf G, Kater L, Pathare GR, Thoma NH

EMDB-54056:
Structure of BAF in complex with OCT4-SOX2-bound nucleosome - SHL+6 class 1
Method: single particle / : Vecchia L, Weiss J, Cavadini S, Kempf G, Kater L, Pathare G, Thoma NH

PDB-9rmc:
Structure of BAF in complex with OCT4-SOX2-bound nucleosome - SHL+6 class 1
Method: single particle / : Vecchia L, Weiss J, Cavadini S, Kempf G, Kater L, Pathare G, Thoma NH

EMDB-54155:
Structure of BAF-nucleosome complex with OCT4-SOX2 at SHL+6 in ADP-bound state, BAF47 bound to ATPase lobe 2 (Consensus map)
Method: single particle / : Domjan D, Weiss J, Cavadini S, Vecchia L, Kempf G, Kater L, Pathare GR, Thoma NH

EMDB-54030:
Structure of BAF in complex with OCT4-SOX2-bound nucleosome - SHL-6
Method: single particle / : Vecchia L, Weiss J, Cavadini S, Kempf G, Kater L, Pathare G, Thoma NH

EMDB-54143:
Structure of BAF in complex with OCT4-SOX2-bound nucleosome - SHL-6 (Focus refinement of ARP module)
Method: single particle / : Vecchia L, Weiss J, Cavadini S, Kempf G, Kater L, Pathare GR, Thoma NH

EMDB-54144:
Structure of BAF in complex with OCT4-SOX2-bound nucleosome - SHL-6 (ATPase part)
Method: single particle / : Vecchia L, Weiss J, Cavadini S, Kempf G, Kater L, Pathare GR, Thoma NH

EMDB-54145:
Structure of BAF in complex with OCT4-SOX2-bound nucleosome - SHL-6 (Focus refinement of BAF BASE+ARM+HEAD)
Method: single particle / : Vecchia L, Weiss J, Cavadini S, Kempf G, Kater L, Pathare GR, Thoma NH

EMDB-54146:
Structure of BAF in complex with OCT4-SOX2-bound nucleosome - SHL-6 (Focus refinement of nucleosome part)
Method: single particle / : Vecchia L, Weiss J, Cavadini S, Kempf G, Kater L, Pathare GR, Thoma NH

EMDB-54152:
Structure of BAF in complex with OCT4-SOX2-bound nucleosome - SHL-6 (Focus refinement of nucleosome+OCT4/SOX2 part)
Method: single particle / : Vecchia L, Weiss J, Cavadini S, Kempf G, Kater L, Pathare GR, Thoma NH

EMDB-54153:
Structure of BAF in complex with OCT4-SOX2-bound nucleosome - SHL-6 (Consensus map)
Method: single particle / : Vecchia L, Weiss J, Cavadini S, Kempf G, Kater L, Pathare GR, Thoma NH

EMDB-54159:
Structure of BAF in complex with OCT4-SOX2-bound nucleosome - SHL-6 (Focused refinement of nucleosome+OCT4/SOX2 part)
Method: single particle / : Vecchia L, Weiss J, Cavadini S, Kempf G, Kater L, Pathare GR, Thoma NH

PDB-9rl4:
Structure of BAF in complex with OCT4-SOX2-bound nucleosome - SHL-6
Method: single particle / : Vecchia L, Weiss J, Cavadini S, Kempf G, Kater L, Pathare G, Thoma NH

EMDB-54154:
Structure of BAF-nucleosome complex with OCT4-SOX2 at SHL+6 in ADP-bound state, BAF47 bound to ATPase lobe 2 (Focused refinement of nucleosome and ATPase lobes)
Method: single particle / : Domjan D, Weiss J, Cavadini S, Vecchia L, Kempf G, Kater L, Pathare GR, Thoma NH

EMDB-54077:
Structure of BAF-nucleosome complex with OCT4-SOX2 at SHL+6 in ADP-bound state, BAF47 bound to ATPase lobe 2
Method: single particle / : Domjan D, Weiss J, Cavadini S, Veccia L, Kempf G, Kater L, Pathare G, Thoma NH

PDB-9rn1:
Structure of BAF-nucleosome complex with OCT4-SOX2 at SHL+6 in ADP-bound state, BAF47 bound to ATPase lobe 2
Method: single particle / : Domjan D, Weiss J, Cavadini S, Veccia L, Kempf G, Kater L, Pathare G, Thoma NH

EMDB-49942:
Cryo-EM structure of CDK2/CyclinE1 in complex with CRBN/DDB1 and Cpd 24
Method: single particle / : Collier P, Zheng X, Ford M, Weiss M, Aversa R, Chen D, Li K, Growney JD, Yang A, Sathappa M, Breitkopf SB, Enerson B, Sawant R, Su L, Howarth L, Liang T, Paul A, Sharma K, Williams J, Kwiatkowski NP

PDB-9nyr:
Cryo-EM structure of CDK2/CyclinE1 in complex with CRBN/DDB1 and Cpd 24
Method: single particle / : Collier P, Zheng X, Ford M, Weiss M, Aversa R, Chen D, Li K, Growney JD, Yang A, Sathappa M, Breitkopf SB, Enerson B, Sawant R, Su L, Howarth L, Liang T, Paul A, Sharma K, Williams J, Kwiatkowski NP

EMDB-72178:
Cereblon Ternary Complex with Blimp1 and compound 5
Method: single particle / : Watson ER, Lander GC

PDB-9q33:
Cereblon Ternary Complex with Blimp1 and compound 5
Method: single particle / : Watson ER

EMDB-72086:
Cryo-EM structure of ternary complex BCL6-CRBN-DDB1 with BCL6-760 (LDD, local refined)
Method: single particle / : Zhu J, Fang W, Pagarigan B

PDB-9q03:
Cryo-EM structure of ternary complex BCL6-CRBN-DDB1 with BCL6-760 (LDD, local refined)
Method: single particle / : Zhu J, Fang W, Pagarigan B

EMDB-51554:
LN02-ML85 Fab in complex with crosslinked DS-SOSIP HIV-1 Env trimer
Method: single particle / : Pedenko B, Effantin G, Weissenhorn W

PDB-9gst:
LN02-ML85 Fab in complex with crosslinked DS-SOSIP HIV-1 Env trimer
Method: single particle / : Pedenko B, Effantin G, Weissenhorn W

EMDB-51514:
Interaction with AK2A links AIFM1 to cellular energy metabolism. The cryo-EM structure of dimeric AIFM1 without any binding partner.
Method: single particle / : Rothemann RA, Pavlenko EA, Gerlich S, Grobushkin P, Mostert S, Stobbe D, Racho J, Stillger K, Lapacz K, Petrungaro C, Dengjel J, Neundorf I, Bano D, Mondal M, Weiss K, Ehninger D, Nguyen THD, Poepsel SP, Riemer J

EMDB-51515:
Interaction with AK2A links AIFM1 to cellular energy metabolism. The cryo-EM structure of dimeric AIFM1 engaged to MIA40.
Method: single particle / : Rothemann RA, Pavlenko EA, Gerlich S, Grobushkin P, Mostert S, Stobbe D, Racho J, Stillger K, Lapacz K, Petrungaro C, Dengjel J, Neundorf I, Bano D, Mondal M, Weiss K, Ehninger D, Nguyen THD, Poepsel SP, Riemer J

EMDB-51516:
Interaction with AK2A links AIFM1 to cellular energy metabolism. The cryo-EM structure of dimeric AIFM1 bound by AK2A.
Method: single particle / : Rothemann RA, Pavlenko EA, Gerlich S, Grobushkin P, Mostert S, Stobbe D, Racho J, Stillger K, Lapacz K, Petrungaro C, Dengjel J, Neundorf I, Bano D, Mondal M, Weiss K, Ehninger D, Nguyen THD, Poepsel SP, Riemer J

PDB-9gqy:
Interaction with AK2A links AIFM1 to cellular energy metabolism. The cryo-EM structure of dimeric AIFM1 without any binding partner.
Method: single particle / : Rothemann RA, Pavlenko EA, Gerlich S, Grobushkin P, Mostert S, Stobbe D, Racho J, Stillger K, Lapacz K, Petrungaro C, Dengjel J, Neundorf I, Bano D, Mondal M, Weiss K, Ehninger D, Nguyen THD, Poepsel SP, Riemer J

PDB-9gqz:
Interaction with AK2A links AIFM1 to cellular energy metabolism. The cryo-EM structure of dimeric AIFM1 engaged to MIA40.
Method: single particle / : Rothemann RA, Pavlenko EA, Gerlich S, Grobushkin P, Mostert S, Stobbe D, Racho J, Stillger K, Lapacz K, Petrungaro C, Dengjel J, Neundorf I, Bano D, Mondal M, Weiss K, Ehninger D, Nguyen THD, Poepsel SP, Riemer J

PDB-9gr0:
Interaction with AK2A links AIFM1 to cellular energy metabolism. The cryo-EM structure of dimeric AIFM1 bound by AK2A.
Method: single particle / : Rothemann RA, Pavlenko EA, Gerlich S, Grobushkin P, Mostert S, Stobbe D, Racho J, Stillger K, Lapacz K, Petrungaro C, Dengjel J, Neundorf I, Bano D, Mondal M, Weiss K, Ehninger D, Nguyen THD, Poepsel SP, Riemer J

EMDB-46464:
Cryo-EM structure of CDK2/CyclinE1 in complex with CRBN/DDB1 and Cpd 4
Method: single particle / : Kwiatkowski N, Liang T, Sha Z, Collier PN, Yang A, Sathappa M, Paul A, Su L, Zheng X, Aversa R, Li K, Mehovic R, Breitkopf SB, Chen D, Howarth CL, Yuan K, Jo H, Growney JD, Weiss M, Williams J

EMDB-46465:
Cryo-EM structure of CDK2/CyclinE1 in complex with CRBN/DDB1 and Cpd 4 (local mask)
Method: single particle / : Kwiatkowski N, Liang T, Sha Z, Collier PN, Yang A, Sathappa M, Paul A, Su L, Zheng X, Aversa R, Li K, Mehovic R, Breitkopf SB, Chen D, Howarth CL, Yuan K, Jo H, Growney JD, Weiss M, Williams J

PDB-9d0w:
Cryo-EM structure of CDK2/CyclinE1 in complex with CRBN/DDB1 and Cpd 4
Method: single particle / : Kwiatkowski N, Liang T, Sha Z, Collier PN, Yang A, Sathappa M, Paul A, Su L, Zheng X, Aversa R, Li K, Mehovic R, Breitkopf SB, Chen D, Howarth CL, Yuan K, Jo H, Growney JD, Weiss M, Williams J

PDB-9d0x:
Cryo-EM structure of CDK2/CyclinE1 in complex with CRBN/DDB1 and Cpd 4 (local mask)
Method: single particle / : Kwiatkowski N, Liang T, Sha Z, Collier PN, Yang A, Sathappa M, Paul A, Su L, Zheng X, Aversa R, Li K, Mehovic R, Breitkopf SB, Chen D, Howarth CL, Yuan K, Jo H, Growney JD, Weiss M, Williams J

EMDB-18997:
Cryo-EM structure of the Sars-Cov2 S trimer without RBDs
Method: single particle / : Effantin G

PDB-8r87:
Cryo-EM structure of the Sars-Cov2 S trimer without RBDs
Method: single particle / : Effantin G

EMDB-50531:
Cryo-electron tomogram of Aureispira sp. CCB-QB1
Method: electron tomography / : Lien YW, Amendola D, Lee KS, Bartlau N, Xu J, Furusawa G, Polz MF, Stocker R, Weiss GL, Pilhofer M

EMDB-50533:
Cryo-electron tomogram of cryoFIB-milled Aureispira sp. CCB-QB1 mixed with Vibrio campbellii
Method: electron tomography / : Lien YW, Amendola D, Lee KS, Bartlau N, Xu J, Furusawa G, Polz MF, Stocker R, Weiss GL, Pilhofer M

EMDB-50544:
Cryo-electron tomogram of cryoFIB-milled Aureispira sp. CCB-QB1 and Vibrio campbellii
Method: electron tomography / : Lien YW, Amendola D, Lee KS, Bartlau N, Xu J, Furusawa G, Polz MF, Stocker R, Weiss GL, Pilhofer M

EMDB-50548:
cryo-electron tomogram of Aureispira sp. CCB-QB1
Method: electron tomography / : Lien YW, Amendola D, Lee KS, Bartlau N, Xu J, Furusawa G, Polz MF, Stocker R, Weiss GL, Pilhofer M

EMDB-50551:
Cryo-electron tomogram of cryoFIB-milled Aureispira sp. CCB-QB1 and Vibrio campbellii
Method: electron tomography / : Lien YW, Amendola D, Lee KS, Bartlau N, Xu J, Furusawa G, Polz MF, Stocker R, Weiss GL, Pilhofer M

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more