[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 534 items for (author: tsai & j)

EMDB-72976:
Human EEPD1 EEP domain dimer
Method: single particle / : Liu M, Shen R, Tainer J

PDB-9yi2:
Human EEPD1 EEP domain dimer
Method: single particle / : Liu M, Shen R, Tainer J

EMDB-64153:
PSI-9 FCPI supercomplex from haptophyte Chrysotila roscoffensis
Method: single particle / : La Rocca R, Tsai PC, Kato K, Nakajima Y, Akita F, Shen JR

EMDB-64154:
PSI-4 FCPI supercomplex from haptophyte Chrysotila roscoffensis
Method: single particle / : La Rocca R, Tsai PC, Kato K, Nakajima Y, Akita F, Shen JR

EMDB-64362:
PSI-1 FCPI supercomplex from haptophyte Chrysotila roscoffensis
Method: single particle / : La Rocca R, Tsai PC, Kato K, Nakajima Y, Akita F, Shen JR

EMDB-64378:
PSI-6 FCPI supercomplex from haptophyte Chrysotila roscoffensis
Method: single particle / : La Rocca R, Tsai PC, Kato K, Nakajima Y, Akita F, Shen JR

EMDB-64383:
PSI-8 FCPI supercomplex from haptophyte Chrysotila roscoffensis
Method: single particle / : La Rocca R, Tsai PC, Kato K, Nakajima Y, Akita F, Shen JR

PDB-9uh3:
PSI-9 FCPI supercomplex from haptophyte Chrysotila roscoffensis
Method: single particle / : La Rocca R, Tsai PC, Kato K, Nakajima Y, Akita F, Shen JR

PDB-9uh4:
PSI-4 FCPI supercomplex from haptophyte Chrysotila roscoffensis
Method: single particle / : La Rocca R, Tsai PC, Kato K, Nakajima Y, Akita F, Shen JR

PDB-9unu:
PSI-1 FCPI supercomplex from haptophyte Chrysotila roscoffensis
Method: single particle / : La Rocca R, Tsai PC, Kato K, Nakajima Y, Akita F, Shen JR

PDB-9uof:
PSI-6 FCPI supercomplex from haptophyte Chrysotila roscoffensis
Method: single particle / : La Rocca R, Tsai PC, Kato K, Nakajima Y, Akita F, Shen JR

PDB-9uov:
PSI-8 FCPI supercomplex from haptophyte Chrysotila roscoffensis
Method: single particle / : La Rocca R, Tsai PC, Kato K, Nakajima Y, Akita F, Shen JR

EMDB-63767:
Cryo-EM structure of wild-type SaCas9-guide RNA-mismatched target DNA complex
Method: single particle / : Omura SN, Nakagawa R, Yamashita K, Nishimasu H, Nureki O

EMDB-63768:
Cryo-EM structure of eSaCas9-NNG-guide RNA-mismatched target DNA complex
Method: single particle / : Omura SN, Nakagawa R, Yamashita K, Nishimasu H, Nureki O

EMDB-63404:
PSI-LHCI supercomplex binding with 4 Lhcas from M. polymorpha
Method: single particle / : Tsai PC, La Rocca R, Shen JR, Akita F

EMDB-63405:
PSI-4 LHCI dimer supercomplex from M. polymorpha
Method: single particle / : Tsai PC, La Rocca R, Shen JR, Akita F

PDB-9lut:
PSI-LHCI supercomplex binding with 4 Lhcas from M. polymorpha
Method: single particle / : Tsai PC, La Rocca R, Shen JR, Akita F

PDB-9luu:
PSI-4 LHCI dimer supercomplex from M. polymorpha
Method: single particle / : Tsai PC, La Rocca R, Shen JR, Akita F

EMDB-49892:
Cryo-EM structure of DDB1dB:CRBN:mezigdomide:SALL4(392-449)
Method: single particle / : Park J, Hunkeler M, Roy Burman SS, Fishcer ES

EMDB-49893:
Cryo-EM structure of DDB1dB:CRBN:mezigdomide:SALL4(392-449;G416A)
Method: single particle / : Park J, Hunkeler M, Roy Burman SS, Fischer ES

PDB-9nws:
Cryo-EM structure of DDB1dB:CRBN:mezigdomide:SALL4(392-449)
Method: single particle / : Park J, Hunkeler M, Roy Burman SS, Fishcer ES

PDB-9nwt:
Cryo-EM structure of DDB1dB:CRBN:mezigdomide:SALL4(392-449;G416A)
Method: single particle / : Park J, Hunkeler M, Roy Burman SS, Fischer ES

EMDB-72358:
Cryo-EM structure of F-box helicase 1 (FBH1) bound to an SCF ubiquitin ligase complex and a 3-way DNA fork (consensus structure)
Method: single particle / : Mullins EA, Schiltz CJ, Eichman BF

EMDB-72359:
Cryo-EM structure of F-box helicase 1 (FBH1) bound to an SCF ubiquitin ligase complex and a 3-way DNA fork (head structure)
Method: single particle / : Mullins EA, Schiltz CJ, Eichman BF

EMDB-72361:
Cryo-EM structure of F-box helicase 1 (FBH1) bound to an SCF ubiquitin ligase complex and a 3-way DNA fork (body structure)
Method: single particle / : Mullins EA, Schiltz CJ, Eichman BF

EMDB-72362:
Cryo-EM structure of F-box helicase 1 (FBH1) bound to an SCF ubiquitin ligase complex and a 3-way DNA fork (substrate structure)
Method: single particle / : Mullins EA, Schiltz CJ, Eichman BF

PDB-9xzj:
Cryo-EM structure of F-box helicase 1 (FBH1) bound to an SCF ubiquitin ligase complex and a 3-way DNA fork (consensus structure)
Method: single particle / : Mullins EA, Schiltz CJ, Eichman BF

PDB-9xzk:
Cryo-EM structure of F-box helicase 1 (FBH1) bound to an SCF ubiquitin ligase complex and a 3-way DNA fork (head structure)
Method: single particle / : Mullins EA, Schiltz CJ, Eichman BF

PDB-9xzl:
Cryo-EM structure of F-box helicase 1 (FBH1) bound to an SCF ubiquitin ligase complex and a 3-way DNA fork (body structure)
Method: single particle / : Mullins EA, Schiltz CJ, Eichman BF

PDB-9xzm:
Cryo-EM structure of F-box helicase 1 (FBH1) bound to an SCF ubiquitin ligase complex and a 3-way DNA fork (substrate structure)
Method: single particle / : Mullins EA, Schiltz CJ, Eichman BF

EMDB-70791:
Cryo-EM structure of the DDB1/CRBN-MRT-5702-G3BP2 ternary complex
Method: single particle / : Quan C, Petzold G, Gainza P, Tsai J, Bunker RD, Wiedmer L, Donckele EJ

PDB-9os2:
Cryo-EM structure of the DDB1/CRBN-MRT-5702-G3BP2 ternary complex
Method: single particle / : Quan C, Petzold G, Gainza P, Tsai J, Bunker RD, Wiedmer L, Donckele EJ

EMDB-72538:
Human papillomavirus purified from lysosomes
Method: single particle / : Sutanto R, Rana J, Mosalaganti S

EMDB-62656:
Cryo-EM structure of PSI-ACPI from Rhodomonas sp. NIES-2332 at 2.08 angstroms resolution
Method: single particle / : Zhang WY, Akita F, Shen JR

EMDB-62717:
Cryo-EM structure of PSI-11ACPIs from Rhodomonas sp. NIES-2332 at 2.14 angstrom resolution
Method: single particle / : Zhang WY, Akita F, Shen JR

EMDB-62846:
cryo-EM structure of PSII-ACPII from Rhodomonas sp. NIES-2332
Method: single particle / : Yonehara N, Akita F, Shen JR

PDB-9kz9:
Cryo-EM structure of PSI-ACPI from Rhodomonas sp. NIES-2332 at 2.08 angstroms resolution
Method: single particle / : Zhang WY, Akita F, Shen JR

PDB-9l0k:
Cryo-EM structure of PSI-11ACPIs from Rhodomonas sp. NIES-2332 at 2.14 angstrom resolution
Method: single particle / : Zhang WY, Akita F, Shen JR

PDB-9l5v:
cryo-EM structure of PSII-ACPII from Rhodomonas sp. NIES-2332
Method: single particle / : Yonehara N, Akita F, Shen JR

EMDB-39941:
Cryo-EM structure of eSaCas9_NNG-guide RNA-target DNA complex in an interrogation state
Method: single particle / : Omura SN, Nakagawa R, Yamashita K, Nishimasu H, Nureki O

EMDB-39942:
Cryo-EM structure of eSaCas9_NNG-guide RNA-target DNA complex in an intermediate state
Method: single particle / : Omura SN, Nakagawa R, Yamashita K, Nishimasu H, Nureki O

EMDB-39944:
Cryo-EM structure of eSaCas9_NNG-guide RNA-target DNA complex in a translocation state
Method: single particle / : Omura SN, Nakagawa R, Yamashita K, Nishimasu H, Nureki O

EMDB-39954:
Cryo-EM structure of eSaCas9_NNG-guide RNA-target DNA complex in a catalytically active state
Method: single particle / : Omura SN, Nakagawa R, Yamashita K, Nishimasu H, Nureki O

EMDB-62800:
Cryo-EM structure of SARS-CoV-2 S-BQ.1 in complex with Ace2 constituent map 1
Method: single particle / : Hsu HF, Wu MH, Chang YC, Hsu STD

EMDB-62810:
Cryo-EM structure of SARS-CoV-2 S-BQ.1 in complex with ACE2 constituent map 2
Method: single particle / : Hsu HF, Wu MH, Chang YC, Hsu STD

EMDB-71819:
Cryo-EM structure of NCLX with calcium (class 3a)
Method: single particle / : Zhang J, Feng L

EMDB-71820:
Cryo-EM structure of NCLX with calcium (class 4a)
Method: single particle / : Zhang J, Feng L

EMDB-71821:
Cryo-EM structure of NCLX at low pH (class 4b)
Method: single particle / : Zhang J, Feng L

EMDB-71822:
Cryo-EM structure of NCLX without calcium (class 1)
Method: single particle / : Zhang J, Feng L

EMDB-71824:
Cryo-EM structure of NCLX without calcium (class 3)
Method: single particle / : Zhang J, Feng L

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more