[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 106 items for (author: townsend & ar)

EMDB-44747:
A broadly-neutralizing antibody against Ebolavirus glycoprotein that can potentiate the breadth and neutralization potency of other anti-glycoprotein antibodies
Method: single particle / : Donnellan FR, Rayaprolu V, Rijal P, O'Dowd V, Parvate A, Callaway H, Hariharan C, Parekh D, Hui S, Shaffer K, Hastie K, Shimanski L, Muller-Krauter H, Stecker T, Balaram A, Halfmann P, Saphire EO, Lightwood DJ, Townsend AR, Draper SJ

PDB-9bop:
A broadly-neutralizing antibody against Ebolavirus glycoprotein that can potentiate the breadth and neutralization potency of other anti-glycoprotein antibodies
Method: single particle / : Donnellan FR, Rayaprolu V, Rijal P, O'Dowd V, Parvate A, Callaway H, Hariharan C, Parekh D, Hui S, Shaffer K, Hastie K, Shimanski L, Muller-Krauter H, Stecker T, Balaram A, Halfmann P, Saphire EO, Lightwood DJ, Townsend AR, Draper SJ

EMDB-43250:
SARS-CoV-2 spike omicron (BA.1) ectodomain trimer in complex with SC27 Fab, global refinement
Method: single particle / : Byrne PO, McLellan JS

EMDB-43261:
SARS-CoV-2 spike omicron (BA.1) ectodomain dimer-of-trimers in complex with SC27 Fab, global refinement
Method: single particle / : Byrne PO, McLellan JS

EMDB-43260:
SARS-CoV-2 spike omicron (BA.1) ectodomain trimer in complex with SC27 Fab, local refinement
Method: single particle / : Byrne PO, McLellan JS

EMDB-43315:
SARS-CoV-2 spike omicron (BA.1) RBD ectodomain dimer-of-trimers in complex with SC27 Fabs
Method: single particle / : Byrne PO, McLellan JS

PDB-8vif:
SARS-CoV-2 spike omicron (BA.1) ectodomain trimer in complex with SC27 Fab, local refinement
Method: single particle / : Byrne PO, McLellan JS

PDB-8vke:
SARS-CoV-2 spike omicron (BA.1) RBD ectodomain dimer-of-trimers in complex with SC27 Fabs
Method: single particle / : Byrne PO, McLellan JS

EMDB-39546:
SARS-CoV-2 Delta Spike in complex with JL-8C
Method: single particle / : Nguyen VHT, Chen X

EMDB-39547:
SARS-CoV-2 Delta Spike in complex with JM-1A
Method: single particle / : Nguyen VHT, Chen X

EMDB-39685:
SARS-CoV-2 Delta Spike in complex with Fab of JE-5C
Method: single particle / : Chen X, Wu YM

EMDB-39686:
SARS-CoV-2 Spike (BA.1) in complex with Fab of JH-8B
Method: single particle / : Chen X, Wu YM

PDB-8yro:
SARS-CoV-2 Delta Spike in complex with JL-8C
Method: single particle / : Nguyen VHT, Chen X

PDB-8yrp:
SARS-CoV-2 Delta Spike in complex with JM-1A
Method: single particle / : Nguyen VHT, Chen X

PDB-8yz5:
SARS-CoV-2 Delta Spike in complex with Fab of JE-5C
Method: single particle / : Chen X, Wu YM

PDB-8yz6:
SARS-CoV-2 Spike (BA.1) in complex with Fab of JH-8B
Method: single particle / : Chen X, Wu YM

EMDB-34806:
SARS-CoV-2 Delta Spike in complex with FP-12A
Method: single particle / : Chen X, Wu YM

EMDB-34807:
SARS-CoV-2 Delta Spike in complex with IS-9A
Method: single particle / : Mohapatra A, Wu YM

EMDB-34808:
SARS-CoV-2 Omicron BA.1 Spike in complex with IY-2A
Method: single particle / : Chen X, Mohapatra A, Wu YM

PDB-8hhx:
SARS-CoV-2 Delta Spike in complex with FP-12A
Method: single particle / : Chen X, Wu YM

PDB-8hhy:
SARS-CoV-2 Delta Spike in complex with IS-9A
Method: single particle / : Mohapatra A, Wu YM

PDB-8hhz:
SARS-CoV-2 Omicron BA.1 Spike in complex with IY-2A
Method: single particle / : Chen X, Mohapatra A, Wu YM

EMDB-27535:
Cryo-EM structure of the ribosome-bound Bacteroides thetaiotaomicron EF-G2
Method: single particle / : Wang C, Han W, Groisman EA, Liu J

EMDB-27543:
One class of E. coli ribosome associated with Bacteroides thetaiotaomicron EF-G2
Method: single particle / : Han W, Wang C, Groisman EA, Liu J

EMDB-27546:
Another class of E. coli ribosome associated with Bacteroides thetaiotaomicron EF-G2
Method: single particle / : Wang C, Han W, Groisman EA, Liu J

EMDB-27547:
Cryo-EM structure of E. coli ribosome associated with Bacteroides thetaiotaomicron EF-G2 from focused 3D refinement
Method: single particle / : Wang C, Han W, Groisman EA, Liu J

EMDB-27561:
E. coli ribosome associated with Bacteroides thetaiotaomicron EF-G2 from combined data
Method: single particle / : Han W, Wang C, Groisman EA, Liu J

PDB-8dmf:
Cryo-EM structure of the ribosome-bound Bacteroides thetaiotaomicron EF-G2
Method: single particle / : Wang C, Han W, Groisman EA, Liu J

EMDB-28596:
CryoEM Structure of NLRP3 NACHT domain in complex with G2394
Method: single particle / : Murray JM, Johnson MC

PDB-8etr:
CryoEM Structure of NLRP3 NACHT domain in complex with G2394
Method: single particle / : Murray JM, Johnson MC

EMDB-13742:
SARS-CoV-2 Spike ectodomain with Fab FI3A
Method: single particle / : Duyvesteyn HME, Ren J

PDB-7q0a:
SARS-CoV-2 Spike ectodomain with Fab FI3A
Method: single particle / : Duyvesteyn HME, Ren J, Stuart DI

EMDB-12274:
EM structure of SARS-CoV-2 Spike glycoprotein in complex with COVOX-40 Fab
Method: single particle / : Duyvesteyn HME, Zhao Y, Ren J, Stuart D

EMDB-12275:
EM structure of SARS-CoV-2 Spike glycoprotein in complex with COVOX-88 Fab
Method: single particle / : Duyvesteyn HME, Zhao Y, Ren J, Stuart D

EMDB-12276:
EM structure of SARS-CoV-2 Spike glycoprotein in complex with COVOX-150 Fab
Method: single particle / : Duyvesteyn HME, Zhao Y, Ren J, Stuart D

EMDB-12277:
EM structure of SARS-CoV-2 Spike glycoprotein in complex with COVOX-40 Fab
Method: single particle / : Duyvesteyn HME, Zhao Y, Ren J, Stuart D

EMDB-12278:
EM structure of SARS-CoV-2 Spike glycoprotein in complex with COVOX-316 Fab
Method: single particle / : Duyvesteyn HME, Zhao Y, Ren J, Stuart D

EMDB-12279:
EM structure of SARS-CoV-2 Spike glycoprotein in complex with COVOX-384 Fab
Method: single particle / : Duyvesteyn HME, Zhao Y, Ren J, Stuart D

EMDB-12280:
EM structure of SARS-CoV-2 Spike glycoprotein (one RBD up) in complex with COVOX-253H55L Fab
Method: single particle / : Duyvesteyn HME, Zhao Y, Ren J, Stuart D

EMDB-12281:
EM structure of SARS-CoV-2 Spike glycoprotein (all RBD down) in complex with COVOX-253H55L Fab
Method: single particle / : Duyvesteyn HME, Zhao Y

EMDB-12282:
EM structure of SARS-CoV-2 Spike glycoprotein in complex with COVOX-253H165L Fab
Method: single particle / : Duyvesteyn HME, Zhao Y, Ren J, Stuart D

EMDB-12283:
EM structure of SARS-CoV-2 Spike glycoprotein (all RBD down) in complex with COVOX-159
Method: single particle / : Duyvesteyn HME, Zhao Y, Ren J, Stuart D

EMDB-12284:
EM structure of SARS-CoV-2 Spike glycoprotein (one RBD up) in complex with COVOX-159
Method: single particle / : Duyvesteyn HME, Zhao Y, Ren J, Stuart D

PDB-7nd3:
EM structure of SARS-CoV-2 Spike glycoprotein in complex with COVOX-40 Fab
Method: single particle / : Duyvesteyn HME, Zhao Y, Ren J, Stuart D

PDB-7nd4:
EM structure of SARS-CoV-2 Spike glycoprotein in complex with COVOX-88 Fab
Method: single particle / : Duyvesteyn HME, Zhao Y, Ren J, Stuart D

PDB-7nd5:
EM structure of SARS-CoV-2 Spike glycoprotein in complex with COVOX-150 Fab
Method: single particle / : Duyvesteyn HME, Zhao Y, Ren J, Stuart D

PDB-7nd6:
EM structure of SARS-CoV-2 Spike glycoprotein in complex with COVOX-40 Fab
Method: single particle / : Duyvesteyn HME, Zhao Y, Ren J, Stuart D

PDB-7nd7:
EM structure of SARS-CoV-2 Spike glycoprotein in complex with COVOX-316 Fab
Method: single particle / : Duyvesteyn HME, Zhao Y, Ren J, Stuart D

PDB-7nd8:
EM structure of SARS-CoV-2 Spike glycoprotein in complex with COVOX-384 Fab
Method: single particle / : Duyvesteyn HME, Zhao Y, Ren J, Stuart D

PDB-7nd9:
EM structure of SARS-CoV-2 Spike glycoprotein (one RBD up) in complex with COVOX-253H55L Fab
Method: single particle / : Duyvesteyn HME, Zhao Y, Ren J, Stuart D

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more