[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 7,465 items for (author: tan & j)

EMDB-58600:
Cryo-EM map of the acetyl-CoA decarbonylase/synthase (ACDS) complex from Methanosarcina acetivorans
Method: single particle / : Zimmer E, Reif-Trauttmansdorff T, Schuller JM

EMDB-58601:
Cryo-EM structure of the CO dehydrogenase (CODH) subcomplex from Methanosarcina acetivorans
Method: single particle / : Zimmer E, Reif-Trauttmansdorff T, Schuller JM

PDB-31ox:
Cryo-EM structure of the CO dehydrogenase (CODH) subcomplex from Methanosarcina acetivorans
Method: single particle / : Zimmer E, Reif-Trauttmansdorff T, Schuller JM

EMDB-56597:
Tau filament with D252V mutation
Method: helical / : Qi C, Lovestam S, Scheres HWS, Goedert M

EMDB-56599:
Tau filament with G272V mutation
Method: helical / : Qi C, Lovestam S, Scheres HWS, Goedert M

EMDB-56600:
Tau filament with delG389_I392 mutation
Method: helical / : Qi C, Lovestam S, Scheres HWS, Goedert M

EMDB-56601:
Tau filament with S320F mutation
Method: helical / : Qi C, Lovestam S, Scheres HWS, Goedert M

PDB-28lj:
Tau filament with D252V mutation
Method: helical / : Qi C, Lovestam S, Scheres HWS, Goedert M

PDB-28lo:
Tau filament with G272V mutation
Method: helical / : Qi C, Lovestam S, Scheres HWS, Goedert M

PDB-28lp:
Tau filament with delG389_I392 mutation
Method: helical / : Qi C, Lovestam S, Scheres HWS, Goedert M

PDB-28lq:
Tau filament with S320F mutation
Method: helical / : Qi C, Lovestam S, Scheres HWS, Goedert M

EMDB-54904:
Structure of trans-basal conformer of human CBS trapped in PLP-aminoacrylate intermediate state (CBS PLP-AA)- by single particle approach
Method: single particle / : Inayathulla M, Tomas M

EMDB-54905:
Structure of trans-basal conformer of human CBS trapped in PLP-serine external aldemine intermediate (CBS-PLP-Ser)- by single particle approach
Method: single particle / : Inayathulla M, Tomas M

EMDB-54925:
Structure of trans-basal conformer of human CBS trapped in PLP-aminoacrylate intermediate state (CBS PLP-AA)- by Helical processing.
Method: helical / : Inayathulla M, Tomas M

EMDB-55037:
Structure of trans-basal conformer of human CBS trapped in PLP-serine external aldemine intermediate (CBS-PLP-Ser)- by Helical approach
Method: helical / : Inayathulla M, Tomas M

EMDB-55097:
focused structure of regulatory domains of cis-basal conformer of human CBS induced by non-activating allosteric SAO ligand - by Helical approach
Method: helical / : Inayathulla M, Tomas M

EMDB-55099:
Structure of cis-basal conformer of human CBS induced by non-activating allosteric SAO ligand - by single particle approach.
Method: single particle / : Inayathulla M, Tomas M

EMDB-55105:
Structure of trans-basal conformer of wild-type human CBS alone (internal aldemine)- by single particle approach
Method: single particle / : Inayathulla M, Tomas M

EMDB-55115:
Structure of trans-basal conformer of wild-type human CBS enzyme in absence of substrate and allosteric activators- by Helical approach
Method: helical / : Inayathulla M, Tomas M

EMDB-55847:
DalDro bound to the terminating Escherichia coli 70S ribosome
Method: single particle / : Berger MJ, Safdari HA, Wilson DN

PDB-9tey:
DalDro bound to the terminating Escherichia coli 70S ribosome
Method: single particle / : Berger MJ, Safdari HA, Wilson DN

EMDB-65593:
Cryo-EM structure of vanadate-trapped LolDF in Acinetobacter baumannii
Method: single particle / : Zhang S, Li Y, Liao M

PDB-9w37:
Cryo-EM structure of vanadate-trapped LolDF in Acinetobacter baumannii
Method: single particle / : Zhang S, Li Y, Liao M

EMDB-72526:
Cryo-EM structure of ternary complex NSD2-PWWP1:CRBN:DDB1 in complex with NSD2-LDD, an LDD degrader
Method: single particle / : Zhu J, Pagarigan BE, Fang W

PDB-9y61:
Cryo-EM structure of ternary complex NSD2-PWWP1:CRBN:DDB1 in complex with NSD2-LDD, an LDD degrader
Method: single particle / : Zhu J, Pagarigan BE, Fang W

PDB-25su:
cryo-EM structure of human TAS2R4
Method: single particle / : Tan M, Wu J

EMDB-66432:
Cryo-EM structure of AKT5 - D403A
Method: single particle / : Muraoka Y, Tanaka Y, Yokoyama T, Furuta T, Yamanashi T, Tsujii M, Tsubota R, Uozumi N

PDB-9x0c:
Cryo-EM structure of AKT5 - D403A
Method: single particle / : Muraoka Y, Tanaka Y, Yokoyama T, Furuta T, Yamanashi T, Tsujii M, Tsubota R, Uozumi N

EMDB-66431:
Cryo-EM structure of AKT5 - WT
Method: single particle / : Muraoka Y, Tanaka Y, Yokoyama T, Furuta T, Yamanashi T, Tsujii M, Tsubota R, Uozumi N

PDB-9x0b:
Cryo-EM structure of AKT5 - WT
Method: single particle / : Muraoka Y, Tanaka Y, Yokoyama T, Furuta T, Yamanashi T, Tsujii M, Tsubota R, Uozumi N

EMDB-54410:
Icosahedral reconstruction of Chikungunya virus-like particle
Method: single particle / : Song X, Kim YC, Huiskonen JT

EMDB-54411:
Chikungunya virus-like particle trimer 1
Method: single particle / : Song X, Kim YC, Huiskonen JT

EMDB-54412:
Chikungunya virus-like particle trimer 2
Method: single particle / : Song X, Kim YC, Huiskonen JT

EMDB-54413:
Composite density map of Chikungunya virus-like particle
Method: single particle / : Song X, Kim YC, Huiskonen JT

EMDB-72520:
Eukaryotic translation initiation factor 2-B (eIF2B) bound to phosphorylated eIF2alpha (NTD)
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A

EMDB-72521:
eIF2B lacking the latch helix bound to ISRACT-01 (Inactive state)
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A

EMDB-72522:
eIF2B lacking the latch helix bound to ISRACT-02 (Active state)
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A

EMDB-72523:
eIF2B lacking the latch helix bound to ISRACT-02 (Inactive state)
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A

PDB-9y5r:
Eukaryotic translation initiation factor 2-B (eIF2B) bound to phosphorylated eIF2alpha (NTD)
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A

PDB-9y5s:
eIF2B lacking the latch helix bound to ISRACT-01 (Inactive state)
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A

PDB-9y5t:
eIF2B lacking the latch helix bound to ISRACT-02 (Active state)
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A

PDB-9y5u:
eIF2B lacking the latch helix bound to ISRACT-02 (Inactive state)
Method: single particle / : Dalwadi U, Croll T, Subramanian A, Lee DJ, Arthur C, Walter P, Frost A

EMDB-67574:
Mfa1 type V pilus from P.gingivalis
Method: single particle / : Shibata S, Matsunami H, Wolf M

PDB-21co:
Mfa1 type V pilus from P.gingivalis
Method: single particle / : Shibata S, Matsunami H, Wolf M

EMDB-54627:
Local refinement of a PSI monomer of A. marina NIES-2412
Method: single particle / : Consoli G, Leong HF

EMDB-54956:
Trimeric photosystem I of Acaryochloris marina NIES-2412
Method: single particle / : Leong HF, Consoli G

PDB-9s6p:
Local refinement of a PSI monomer of A. marina NIES-2412
Method: single particle / : Consoli G, Leong HF

PDB-9sk3:
Trimeric photosystem I of Acaryochloris marina NIES-2412
Method: single particle / : Leong HF, Consoli G

EMDB-65582:
Cryo-EM structure of two abaucin-bound LolDF in Acinetobacter baumannii
Method: single particle / : Zhang S, Li Y, Liao M

EMDB-65591:
Cryo-EM structure of four abaucin-bound LolDF in Acinetobacter baumannii
Method: single particle / : Zhang S, Li Y, Liao M

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more