[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 29 items for (author: sugimoto & y)

EMDB-62028:
Cryo-EM structure of TMPRSS2 in complex with Fab fragments of 752 mAb and 2228 mAb
Method: single particle / : Katsura K, Hisano T, Matsumoto T, Shirouzu M

PDB-9k3t:
Cryo-EM structure of TMPRSS2 in complex with Fab fragments of 752 mAb and 2228 mAb
Method: single particle / : Katsura K, Hisano T, Matsumoto T, Shirouzu M

EMDB-46969:
Cholinephosphotransferase in complex with diacylglycerol in nanodisc
Method: single particle / : Roberts JR, Maeda S, Ohi MD

EMDB-42496:
Cholinephosphotransferase in complex with CDP-choline and phosphatidylcholine
Method: single particle / : Roberts JR, Maeda S, Ohi MD

EMDB-42500:
Cholinephosphotransferase in complex with selective inhibitor chelerythrine
Method: single particle / : Roberts JR, Maeda S, Ohi MD

PDB-8urp:
Cholinephosphotransferase in complex with CDP-choline and phosphatidylcholine
Method: single particle / : Roberts JR, Maeda S, Ohi MD

PDB-8urt:
Cholinephosphotransferase in complex with selective inhibitor chelerythrine
Method: single particle / : Roberts JR, Maeda S, Ohi MD

EMDB-42357:
Cholinephosphotransferase in complex with diacylglycerol
Method: single particle / : Roberts JR, Maeda S, Ohi MD

PDB-8ul9:
Cholinephosphotransferase in complex with diacylglycerol
Method: single particle / : Roberts JR, Maeda S, Ohi MD

EMDB-39197:
Cryo-EM structure of the channelrhodopsin GtCCR2 focused on the monomer
Method: single particle / : Tanaka T, Iida W, Sano FK, Oda K, Shihoya W, Nureki O

EMDB-39198:
Cryo-EM structure of the channelrhodopsin GtCCR2
Method: single particle / : Tanaka T, Iida W, Sano FK, Oda K, Shihoya W, Nureki O

EMDB-39199:
Cryo-EM structure of the channelrhodopsin GtCCR4
Method: single particle / : Tanaka T, Iida W, Sano FK, Oda K, Shihoya W, Nureki O

PDB-8yej:
Cryo-EM structure of the channelrhodopsin GtCCR2 focused on the monomer
Method: single particle / : Tanaka T, Iida W, Sano FK, Oda K, Shihoya W, Nureki O

PDB-8yek:
Cryo-EM structure of the channelrhodopsin GtCCR2
Method: single particle / : Tanaka T, Iida W, Sano FK, Oda K, Shihoya W, Nureki O

PDB-8yel:
Cryo-EM structure of the channelrhodopsin GtCCR4
Method: single particle / : Tanaka T, Iida W, Sano FK, Oda K, Shihoya W, Nureki O

EMDB-40983:
Negative stain EM assembly of MYC, JAZ, and NINJA complex
Method: single particle / : Zhou XE, Zhang Y, Zhou Y, He Q, Cao X, Kariapper L, Suino-Powell K, Zhu Y, Zhang F, Karsten M

PDB-8t2i:
Negative stain EM assembly of MYC, JAZ, and NINJA complex
Method: single particle / : Zhou XE, Zhang Y, Zhou Y, He Q, Cao X, Kariapper L, Suino-Powell K, Zhu Y, Zhang F, Karsten M

EMDB-31572:
Minor cryo-EM structure of S protein trimer of SARS-CoV2 with K-874A VHHs , focused refinement of K-874A, RBD and NTD
Method: single particle / : Song C, Katayama K, Murata K

EMDB-31573:
Minor cryo-EM structure of S protein trimer of SARS-CoV2 with K-874A VHHs
Method: single particle / : Song C, Katayama K, Murata K

EMDB-31574:
Minor cryo-EM structure of S protein trimer of SARS-CoV2 with K-874A VHH, composite map
Method: single particle / : Song C, Murata K, Katayama K

EMDB-31575:
Major cryo-EM structure of S protein trimer of SARS-CoV2 with K-874A VHHs, focussed refinement of K-874A, RBD and NTD
Method: single particle / : Song C, Katayama K, Murata K

EMDB-31576:
Major cryo-EM structure of S protein trimer of SARS-CoV2 with K-874A VHHs
Method: single particle / : Song C, Katayama K, Murata K

EMDB-31577:
Major cryo-EM structure of S protein trimer of SARS-CoV2 with K-874, composite map
Method: single particle / : Song C, Katayama K, Murata K, Yokoyama M, Miyazaki N, Iwasaki K, Murakami K

EMDB-31578:
Cryo-EM structure of S protein trimer of SARS-CoV2
Method: single particle / : Song C, Murata K, Katayama K

PDB-7fg2:
Minor cryo-EM structure of S protein trimer of SARS-CoV2 with K-874A VHH, composite map
Method: single particle / : Song C, Murata K, Katayama K

PDB-7fg3:
Major cryo-EM structure of S protein trimer of SARS-CoV2 with K-874, composite map
Method: single particle / : Song C, Katayama K, Murata K

PDB-7fg7:
Cryo-EM structure of S protein trimer of SARS-CoV2
Method: single particle / : Song C, Murata K, Katayama K

EMDB-2762:
Electron cryo-microscopy of human mitochondrial large ribosomal subunit
Method: single particle / : Brown A, Amunts A, Bai XC, Sugimoto Y, Edwards PC, Murshudov G, Scheres SHW, Ramakrishnan V

PDB-3j7y:
Structure of the large ribosomal subunit from human mitochondria
Method: single particle / : Brown A, Amunts A, Bai XC, Sugimoto Y, Edwards PC, Murshudov G, Scheres SHW, Ramakrishnan V

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more