[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 546 items for (author: stam & w)

EMDB-55800:
Integrin AlphaIIbBeta3 bound to Fab of the anti-HPA-1a antibody 26.4
Method: single particle / : de Pereda JM, Stam W, Gragera M, van der Meer F, Chichon FJ, Zarkadas E, van der Schoot E, Vidarsson G, Takagi J, Margadant C

PDB-9td2:
Integrin AlphaIIbBeta3 bound to Fab of the anti-HPA-1a antibody 26.4
Method: single particle / : de Pereda JM, Stam W, Gragera M, van der Meer F, Chichon FJ, Zarkadas E, van der Schoot E, Vidarsson G, Takagi J, Margadant C

EMDB-57273:
AD fold in mouse injected with seeds of AD
Method: helical / : Lovestam SL, Scheres SHW, Goedert M

EMDB-57275:
CBD fold in mouse injected with seeds of CBD
Method: helical / : Lovestam SL, Scheres SHW, Goedert M

PDB-29os:
AD fold in mouse injected with seeds of AD
Method: helical / : Lovestam SL, Scheres SHW, Goedert M

PDB-29ou:
CBD fold in mouse injected with seeds of CBD
Method: helical / : Lovestam SL, Scheres SHW, Goedert M

EMDB-71677:
HIV-1 bnAb 1-23 in complex with BG505 MD39 SOSIP and RM19R
Method: single particle / : Bader DLV, Ozorowski G, Ward AB

EMDB-71678:
HIV-1 bnAb 9-71 in complex with BG505 MD39 SOSIP and RM19R
Method: single particle / : Bader DLV, Ozorowski G, Ward AB

PDB-9pit:
HIV-1 bnAb 1-23 in complex with BG505 MD39 SOSIP and RM19R
Method: single particle / : Bader DLV, Ozorowski G, Ward AB

PDB-9piv:
HIV-1 bnAb 9-71 in complex with BG505 MD39 SOSIP and RM19R
Method: single particle / : Bader DLV, Ozorowski G, Ward AB

EMDB-49185:
Negative stain EM map of H1 HA (A/California/4/2009) in complex with monoclonal fab ST4
Method: single particle / : Rodriguez AJ, Han J, Ward AB

EMDB-49186:
Negative stain EM map of H1 HA (A/California/4/2009) in complex with monoclonal fab ST6 and monoclonal fab 045-09 2B05
Method: single particle / : Rodriguez AJ, Han J, Ward AB

EMDB-49187:
Negative stain EM map of H1 HA (A/California/4/2009) in complex with monoclonal fab ST10
Method: single particle / : Rodriguez AJ, Han J, Ward AB

EMDB-49188:
Negative stain EM map of H1 HA (A/California/4/2009) in complex with monoclonal fab ST13
Method: single particle / : Rodriguez AJ, Han J, Ward AB

EMDB-49189:
Negative stain EM map of H1 HA (A/California/4/2009) in complex with monoclonal fab ST14
Method: single particle / : Rodriguez AJ, Han J, Ward AB

EMDB-49190:
Negative stain EM map of H1 HA (A/California/4/2009) in complex with monoclonal fab ST15
Method: single particle / : Rodriguez AJ, Han J, Ward AB

EMDB-49191:
Negative stain EM map of H1 HA (A/California/4/2009) in complex with monoclonal fab ST17
Method: single particle / : Rodriguez AJ, Han J, Ward AB

EMDB-49192:
Negative stain EM map of H1 HA (A/California/4/2009) in complex with monoclonal fab ST18
Method: single particle / : Rodriguez AJ, Han J, Ward AB

EMDB-49097:
H1 hemagglutinin (A/Michigan/45/2015) in complex with anchor-targeting Fab ST15
Method: single particle / : Brouwer PJM, Loeffler JR, Ferguson JA, Rodriguez AJ, Han J, Ward AB

EMDB-49098:
H1 hemagglutinin (A/California/04/2009) with E47K mutation in HA2 in complex with central stem-targeting Fab ST10
Method: single particle / : Brouwer PJM, Loeffler JR, Ferguson JA, Rodriguez AJ, Han J, Ward AB

EMDB-49099:
H5 hemagglutinin (A/Jiangsu/NJ210/2023) in complex with central stem-targeting Fab ST14
Method: single particle / : Brouwer PJM, Loeffler JR, Ferguson JA, Rodriguez AJ, Han J, Ward AB

EMDB-49100:
H1 hemagglutinin (A/Michigan/45/2015) in complex with anchor-targeting Fab ST4
Method: single particle / : Brouwer PJM, Loeffler JR, Ferguson JA, Rodriguez AJ, Han J, Ward AB

EMDB-47765:
Week 26 C3V5, gp41-GH and gp41-base epitope polyclonal antibodies from participant 202 in complex with ConM SOSIP
Method: single particle / : Lin RN, Torres JL, Tran AS, Ozorowski G, Ward AB

EMDB-48548:
SARS-CoV-2 S2 monomer in complex with R125-61 Fab
Method: single particle / : Park S, Bangaru B, Ward AB

EMDB-48549:
SARS-CoV-2 S2 monomer in complex with NICA01B-1113 Fab
Method: single particle / : Park S, Bangaru B, Ward AB

EMDB-48550:
SARS-CoV-2 S2 monomer in complex with NICA01A-1401 Fab
Method: single particle / : Park S, Bangaru B, Ward AB

PDB-9mr1:
SARS-CoV-2 S2 monomer in complex with R125-61 Fab
Method: single particle / : Park S, Bangaru B, Ward AB

PDB-9mr2:
SARS-CoV-2 S2 monomer in complex with NICA01A-1401 Fab
Method: single particle / : Park S, Bangaru B, Ward AB

EMDB-53247:
Tau Paired Helical Filaments using PAD12 for seeding in primary mouse neurons
Method: helical / : Lovestam S, Scheres SHW

EMDB-53461:
Tau (297-391) assembled in the presence of CuCl2
Method: helical / : Lovestam S, Scheres SHW

EMDB-53462:
Tau(297-408 S396D S400D T403D S404D) head to head fold type 1
Method: helical / : Lovestam S, Scheres SHW

EMDB-53463:
Tau(297-391) filaments PHF fold
Method: helical / : Lovestam S, Scheres SHW

EMDB-53464:
Tau(297-408 S396D S400D T403D S404D) head to head fold type 2
Method: helical / : Lovestam S, Scheres SHW

EMDB-72735:
HIV-1 Env Q23 NFL TD CC3+ in complex with NHP Q9 V2-apex polyclonal antibody Fabs isolated post-2 immunizations
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-72736:
HIV-1 Env Q23 NFL TD CC3+ in complex with NHP Q10 V2-apex polyclonal antibody Fabs isolated post-2 immunizations
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-72737:
HIV-1 Env Q23 NFL TD CC3+ in complex with NHP Q12 V2-apex polyclonal antibody Fabs isolated post-2 immunizations
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-72738:
HIV-1 Env 16055 NFL TD CC2+ in complex with pooled NHP Q8-Q9-Q12 V2-apex polyclonal antibody Fabs isolated post-4 immunizations
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-72739:
HIV-1 Env BG505 NFL TD CC3+ in complex with pooled NHP Q8-Q9-Q12 V2-apex polyclonal antibody Fabs isolated post-4 immunizations
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-54909:
Head to Head tau filament with the Alzheimer's fold
Method: helical / : Scheres SHW, Goedert M

PDB-9shs:
Head to Head tau filament with the Alzheimer's fold
Method: helical / : Scheres SHW, Goedert M

EMDB-70906:
CryoEM structural insight into the breast cancer pH regulator NBCn1
Method: single particle / : Weiguang W, Hristina RZ, Kirill T, Hong Z, Alexander P, Ira K

PDB-9ovr:
CryoEM structural insight into the breast cancer pH regulator NBCn1
Method: single particle / : Weiguang W, Hristina RZ, Kirill T, Hong Z, Alexander P, Ira K

EMDB-54485:
297-441 delta392-395 tau filaments
Method: helical / : Lovestam SL, Scheres SHW

PDB-9s2b:
297-441 delta392-395 tau filaments
Method: helical / : Lovestam SL, Scheres SHW

EMDB-46824:
Polyclonal immune complex of human subject 321-2006 Fab binding H1 HA
Method: single particle / : Han J, Rodriguez AJ, Ferguson JA, Ward AB

EMDB-46825:
Polyclonal immune complex of human subject 321-2009 Fab binding H1 HA
Method: single particle / : Han J, Rodriguez AJ, Ferguson JA, Ward AB

EMDB-46827:
Polyclonal immune complex of human subject 321-2012 Fab binding H1 HA
Method: single particle / : Han J, Rodriguez AJ, Ferguson JA, Ward AB

EMDB-46829:
Polyclonal immune complex of Fab from Cynomolgus Macaque 6974 at week 12 binding H1 HA
Method: single particle / : Han J, Rodriguez AJ, Ferguson JA, Ward AB

EMDB-46830:
Polyclonal immune complex of Fab from Rhesus Macaque BB798E at week 12 binding H1 HA
Method: single particle / : Han J, Rodriguez AJ, Ferguson JA, Ward AB

EMDB-46831:
Polyclonal immune complex of Fab from Cynomolgus Macaque T009 at week 12 binding H1 HA
Method: single particle / : Han J, Rodriguez AJ, Ferguson JA, Ward AB

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more