[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 303 items for (author: sergey & n)

EMDB-53880:
The L1 amyloid-beta(1-40)fibril in the presence of anle138b (post-treatment)
Method: helical / : Frieg B, Han M, Griesinger C, Schroeder GF

EMDB-53882:
The L1 amyloid-beta(1-40)fibril in the presence of anle138b (pre-treatment)
Method: helical / : Frieg B, Han M, Griesinger C, Schroeder GF

PDB-9raw:
The L1 amyloid-beta(1-40)fibril in the presence of anle138b (post-treatment)
Method: helical / : Frieg B, Han M, Griesinger C, Schroeder GF

PDB-9rax:
The L1 amyloid-beta(1-40)fibril in the presence of anle138b (pre-treatment)
Method: helical / : Frieg B, Han M, Griesinger C, Schroeder GF

EMDB-70838:
Rabbit 37496 base and V1/V3 epitope polyclonal Fabs in complex with BG505 MD39.3 SOSIP
Method: single particle / : Ozorowski G, Torres JL, Jackson AM, Ward AB

EMDB-70839:
Rabbit 37496 base and gp41-GH epitope polyclonal Fabs in complex with BG505 MD39.3 SOSIP
Method: single particle / : Ozorowski G, Torres JL, Jackson AM, Ward AB

EMDB-70840:
Rabbit 37496 base and gp120-GH epitope polyclonal Fabs in complex with BG505 MD39.3 SOSIP
Method: single particle / : Ozorowski G, Torres JL, Jackson AM, Ward AB

EMDB-70846:
Rabbit 37496 base and C3V5 epitope polyclonal Fabs in complex with BG505 MD39.3 SOSIP
Method: single particle / : Ozorowski G, Torres JL, Jackson AM, Ward AB

EMDB-70847:
Rabbit 37450 base, gp41-FP and gp120int epitope polyclonal Fabs in complex with BG505 MD39.3 SOSIP
Method: single particle / : Ozorowski G, Torres JL, Jackson AM, Ward AB

EMDB-70848:
Rabbit 37442 base and gp120int epitope polyclonal Fabs in complex with BG505 MD39.3 SOSIP
Method: single particle / : Ozorowski G, Torres JL, Jackson AM, Ward AB

EMDB-70852:
NHP RJh18 base epitope polyclonal Fabs in complex with BG505 MD39.3 SOSIP
Method: single particle / : Ozorowski G, Torres JL, Jackson AM, Ward AB

EMDB-70855:
NHP RUv18 base epitope polyclonal Fabs in complex with BG505 MD39.3 SOSIP
Method: single particle / : Ozorowski G, Torres JL, Jackson AM, Ward AB

EMDB-70858:
NHP RUv18 V1/V3 epitope polyclonal Fabs in complex with BG505 MD39.3 SOSIP
Method: single particle / : Ozorowski G, Torres JL, Jackson AM, Ward AB

EMDB-70860:
NHP REy18 base and V1/V3 epitope polyclonal Fabs in complex with BG505 MD39.3 SOSIP
Method: single particle / : Ozorowski G, Torres JL, Jackson AM, Ward AB

EMDB-47689:
Cryo-EM structure of NOT1:NOT7:PieF
Method: single particle / : Levdansky E, Deme J, Lea SM, Valkov E

EMDB-47690:
Cryo-EM structure of NOT1:NOT8:PieF
Method: single particle / : Levdansky E, Deme J, Lea SM, Valkov E

PDB-9e7t:
Cryo-EM structure of NOT1:NOT7:PieF
Method: single particle / : Levdansky E, Deme J, Lea SM, Valkov E

PDB-9e7u:
Cryo-EM structure of NOT1:NOT8:PieF
Method: single particle / : Levdansky E, Deme J, Lea SM, Valkov E

EMDB-53511:
SpCas9 with computationally designed SpCas9_b10 binder
Method: single particle / : Pacesa M, Nickel L, Correia BE

EMDB-53510:
SpCas9 with computationally designed SpCas9_b3 binder
Method: single particle / : Pacesa M, Nickel L, Correia BE

EMDB-53347:
Structure of the 50S ribosomal subunit from the antibiotic-producing bacterium Streptomyces fradiae
Method: single particle / : Ekemezie CL, Melnikov SV

PDB-9qt5:
Structure of the 50S ribosomal subunit from the antibiotic-producing bacterium Streptomyces fradiae
Method: single particle / : Ekemezie CL, Melnikov SV

EMDB-50957:
Cryo-EM map of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)
Method: single particle / : Kolosova O, Zgadzay Y, Stetsenko A, Atamas A, Jenner LB, Guskov A, Yusupov M

EMDB-50990:
Cryo-EM map of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) shows strong density for the A site tRNA
Method: single particle / : Kolosova O, Zgadzay Y, Jenner LB, Guskov A, Yusupov M

EMDB-51103:
Cryo-EM map of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA
Method: single particle / : Kolosova O, Zgadzay Y, Jenner LB, Guskov A, Yusupov M

PDB-9g1z:
Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)
Method: single particle / : Kolosova O, Zgadzay Y, Stetsenko A, Atamas A, Jenner LB, Guskov A, Yusupov M

PDB-9g30:
The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) shows strong density for the A site tRNA
Method: single particle / : Kolosova O, Zgadzay Y, Jenner LB, Guskov A, Yusupov M

PDB-9g6j:
The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA
Method: single particle / : Kolosova O, Zgadzay Y, Jenner LB, Guskov A, Yusupov M

EMDB-52036:
Cryo-EM structure of P. urativorans 70S ribosome with 2 copies of bS20.
Method: single particle / : Helena-Bueno K, Hill CH, Melnikov SV

EMDB-52351:
subtomogram average of the P. urativorans 70S ribosome
Method: subtomogram averaging / : Kopetschke S, Pfeffer S

EMDB-52352:
subtomogram average of the P. urativorans 70S ribosome with one copy of bS20
Method: subtomogram averaging / : Kopetschke S, Pfeffer S

EMDB-52354:
subtomogram average of the P. urativorans 70S ribosome with two copies of bS20
Method: subtomogram averaging / : Kopetschke S, Pfeffer S

EMDB-52842:
Cryo-ET of cryo-FIB milled P. urativorans grown at physiological conditions
Method: electron tomography / : Kopetschke S, Pfeffer S

PDB-9hc4:
Cryo-EM structure of P. urativorans 70S ribosome with 2 copies of bS20.
Method: single particle / : Helena-Bueno K, Hill CH, Melnikov SV

EMDB-46632:
E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)
Method: single particle / : Pichkur EB, Panteleev PV, Konevega AL

PDB-9d89:
E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)
Method: single particle / : Pichkur EB, Panteleev PV, Konevega AL

EMDB-50040:
Scalable protein design using hallucination in a relaxed sequence space
Method: single particle / : Frank CJ, Dietz H

EMDB-50113:
Scalable protein design using hallucination in a relaxed sequence space
Method: single particle / : Frank CJ, Dietz H

PDB-9exk:
Scalable protein design using hallucination in a relaxed sequence space
Method: single particle / : Frank CJ, Dietz H

PDB-9f0l:
Scalable protein design using hallucination in a relaxed sequence space
Method: single particle / : Frank CJ, Motoyuki H, Dietz H

EMDB-16920:
40S body focused map of Candida albicans 80S ribosome in complex with mefloquine
Method: single particle / : Kolosova O, Zgadzay Y, Stetsenko A, Guskov A, Yusupov M

EMDB-16921:
40S head focused map of Candida albicans 80S ribosome in complex with mefloquine
Method: single particle / : Kolosova O, Zgadzay Y, Stetsenko A, Guskov A, Yusupov M

EMDB-16922:
Combined map of Candida albicans 80S ribosome in complex with mefloquine
Method: single particle / : Kolosova O, Zgadzay Y, Stetsenko A, Guskov A, Yusupov M

EMDB-45229:
In-cell Toxoplasma gondii nuclear pore complex cytoplasmic ring focused refinement
Method: subtomogram averaging / : Singh D, Hutchings J, Li Z, Guo Q, Villa E

EMDB-45230:
In-cell Toxoplasma gondii nuclear pore complex inner ring focused refinement
Method: subtomogram averaging / : Singh D, Hutchings J, Li Z, Guo Q, Villa E

EMDB-45231:
In-cell Toxoplasma gondii nuclear pore complex nuclear ring focused refinement
Method: subtomogram averaging / : Singh D, Hutchings J, Li Z, Guo Q, Villa E

EMDB-45232:
In-cell Toxoplasma gondii nuclear pore complex membrane focused refinement
Method: subtomogram averaging / : Singh D, Hutchings J, Li Z, Guo Q, Villa E

EMDB-45233:
In-cell Toxoplasma gondii nuclear pore complex lumenal ring focused refinement
Method: subtomogram averaging / : Singh D, Hutchings J, Li Z, Guo Q, Villa E

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more