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Showing 1 - 50 of 313 items for (author: rappsilber & j)

EMDB-55897:
DDK-salt stripped phosphorylated MCM2-7 DH
Method: single particle / : Saleh A, Noguchi Y, Schneider S, Aramayo R, Speck C

EMDB-55904:
Cryo-EM structure of MCM2-7 DH bound to Sld3-Sld7 (composite map)
Method: single particle / : Saleh A, Noguchi Y, Ivanova ME, Aramayo R, Speck C

EMDB-55918:
Cryo-EM structure of MCM2-7 DH bound to Sld3-Sld7, Cdc45 and DNA (composite map)
Method: single particle / : Saleh A, Noguchi Y, Schneider S, Aramayo R, Speck C

EMDB-55972:
Cryo-EM map of MCM2-7 DH bound to Sld3-Sld7 (consensus map, 882k particles)
Method: single particle / : Saleh A, Noguchi Y, Ivanova ME, Aramayo R, Speck C

EMDB-55973:
Cryo-EM map of MCM2-7 DH bound to Sld3-Sld7 (focused map: C2 DH core)
Method: single particle / : Saleh A, Noguchi Y, Ivanova ME, Aramayo R, Speck C

EMDB-55974:
Cryo-EM map of MCM2-7 DH bound to Sld3-Sld7 (focused map: Sld3 MRD1:Mcm6)
Method: single particle / : Saleh A, Noguchi Y, Ivanova ME, Aramayo R, Speck C

EMDB-55975:
Cryo-EM map of MCM2-7 DH bound to Sld3-Sld7 (focused map: Sld3 MRD2:Mcm4)
Method: single particle / : Saleh A, Noguchi Y, Ivanova ME, Aramayo R, Speck C

EMDB-55976:
Cryo-EM map of MCM2-7 DH bound to Sld3-Sld7 (focused map: Sld7:Mcm6)
Method: single particle / : Saleh A, Noguchi Y, Ivanova ME, Aramayo R, Speck C

EMDB-55980:
Cryo-EM map of MCM2-7 DH bound to Sld3-Sld7 (DH core C-lobe twist states consensus map, 511k particles)
Method: single particle / : Saleh A, Noguchi Y, Ivanova ME, Aramayo R, Speck C

EMDB-55981:
Cryo-EM map of MCM2-7 DH bound to Sld3-Sld7 (DH core C-lobe twist state I)
Method: single particle / : Saleh A, Noguchi Y, Ivanova ME, Aramayo R, Speck C

EMDB-55982:
Cryo-EM map of MCM2-7 DH bound to Sld3-Sld7 (DH core C-lobe twist state II)
Method: single particle / : Saleh A, Noguchi Y, Ivanova ME, Aramayo R, Speck C

EMDB-55983:
Cryo-EM map of MCM2-7 DH bound to Sld3-Sld7 (DH core C-lobe twist state III)
Method: single particle / : Saleh A, Noguchi Y, Ivanova ME, Aramayo R, Speck C

EMDB-55985:
Cryo-EM map of MCM2-7 DH bound to Sld3-Sld7, Cdc45 and DNA (consensus map, 107k particles)
Method: single particle / : Saleh A, Noguchi Y, Schneider S, Aramayo R, Speck C

EMDB-55986:
Cryo-EM map of MCM2-7 DH bound to Sld3-Sld7, Cdc45 and DNA (focused map: C2 DH core)
Method: single particle / : Saleh A, Noguchi Y, Schneider S, Aramayo R, Speck C

EMDB-55987:
Cryo-EM map of MCM2-7 DH bound to Sld3-Sld7, Cdc45 and DNA (focused map: Sld3 MRD1/2:Mcm4/6)
Method: single particle / : Saleh A, Noguchi Y, Schneider S, Aramayo R, Speck C

EMDB-55988:
Cryo-EM map of MCM2-7 DH bound to Sld3-Sld7, Cdc45 and DNA (focused map: Sld7:Mcm6)
Method: single particle / : Saleh A, Noguchi Y, Schneider S, Aramayo R, Speck C

EMDB-55989:
Cryo-EM map of MCM2-7 DH bound to Sld3-Sld7, Cdc45 and DNA (focused map: Sld3 STD/Cdc45:Mcm2/5)
Method: single particle / : Saleh A, Noguchi Y, Schneider S, Aramayo R, Speck C

EMDB-55990:
3DFlex map of MCM2-7 DH-Sld3/7-Cdc45
Method: single particle / : Saleh A, Noguchi Y, Schneider S, Aramayo R, Speck C

EMDB-56009:
Cryo-EM map of MCM2-7 DH bound to DNA and two copies of Sld3-Sld7 and Cdc45 (C1 symmetry)
Method: single particle / : Saleh A, Noguchi Y, Schneider S, Aramayo R, Speck C

EMDB-56010:
Cryo-EM map of MCM2-7 DH bound to DNA and two copies of Sld3-Sld7 and Cdc45 (C2 symmetry)
Method: single particle / : Saleh A, Noguchi Y, Schneider S, Aramayo R, Speck C

EMDB-56011:
Negative stain-EM map of crosslinked gradient purified Sld3-Sld7
Method: single particle / : Saleh A, Noguchi Y, Schneider S, Aramayo R, Speck C

EMDB-56012:
Negative stain-EM map of crosslinked gradient purified Sld3-Sld7-Cdc45
Method: single particle / : Saleh A, Noguchi Y, Schneider S, Aramayo R, Speck C

EMDB-54924:
Chromosomal Passenger Complex in complex with H3T3ph Nucleosome
Method: single particle / : Gireesh A, Abad MA, Sotelo-Parrilla P, Jeyaprakash AA

EMDB-54926:
Chromosomal Passenger Complex in complex with H3T3ph Nucleosome (Class0)
Method: single particle / : Gireesh A, Abad MA, Sotelo-Parrilla P, Jeyaprakash AA

EMDB-54938:
Chromosomal Passenger Complex in complex with H3T3ph Nucleosome (Class1)
Method: single particle / : Gireesh A, Abad MA, Sotelo-Parrilla P, Jeyaprakash AA

EMDB-55003:
Chromosomal Passenger Complex in complex with H3T3ph Nucleosome (Double Occupancy)
Method: single particle / : Gireesh A, Abad MA, Sotelo-Parrilla P, Jeyaprakash AA

EMDB-55012:
Chromosomal Passenger Complex in complex with H3T3ph Nucleosome (Double Occupancy map)
Method: single particle / : Gireesh A, Abad MA, Sotelo-Parrilla P, Jeyaprakash AA

PDB-9si3:
Chromosomal Passenger Complex in complex with H3T3ph Nucleosome
Method: single particle / : Gireesh A, Abad MA, Sotelo-Parrilla P, Jeyaprakash AA

PDB-9si9:
Chromosomal Passenger Complex in complex with H3T3ph Nucleosome (Class0)
Method: single particle / : Gireesh A, Abad MA, Sotelo-Parrilla P, Jeyaprakash AA

PDB-9sj5:
Chromosomal Passenger Complex in complex with H3T3ph Nucleosome (Class1)
Method: single particle / : Gireesh A, Abad MA, Sotelo-Parrilla P, Jeyaprakash AA

PDB-9slj:
Chromosomal Passenger Complex in complex with H3T3ph Nucleosome (Double Occupancy)
Method: single particle / : Gireesh A, Abad MA, Sotelo-Parrilla P, Jeyaprakash AA

EMDB-50532:
Cryo-EM structure of human AK2 bound to reduced human AIFM1 (residues 102-613), class 3
Method: single particle / : Lauer SM, Spahn CMT, Schwefel D

EMDB-50534:
Cryo-EM structure of human AK2 bound to reduced human AIFM1 (residues 102-613), class 1
Method: single particle / : Lauer SM, Spahn CMT, Schwefel D

EMDB-50535:
Cryo-EM structure of human AK2 bound to reduced human AIFM1 (residues 102-613), class 2
Method: single particle / : Lauer SM, Spahn CMT, Schwefel D

PDB-9fl7:
Cryo-EM structure of human AK2 bound to reduced human AIFM1 (residues 102-613), class 3
Method: single particle / : Lauer SM, Spahn CMT, Schwefel D

EMDB-51572:
30S mRNA delivery complex (open head) consensus map
Method: single particle / : Rahil H, Webster MW, Weixlbaumer A

EMDB-51573:
30S mRNA delivery complex (open head) focused head map
Method: single particle / : Rahil H, Webster MW, Weixlbaumer A

EMDB-51574:
30S mRNA delivery complex (open head) focused body map
Method: single particle / : Rahil H, Webster MW, Weixlbaumer A

EMDB-51575:
30S mRNA delivery complex (open head) focused platform map
Method: single particle / : Rahil H, Webster MW, Weixlbaumer A

EMDB-51576:
30S mRNA delivery complex (consensus) consensus map
Method: single particle / : Rahil H, Webster MW, Weixlbaumer A

EMDB-51577:
30S mRNA delivery complex (consensus) focused head map
Method: single particle / : Rahil H, Webster MW, Weixlbaumer A

EMDB-51578:
30S mRNA delivery complex (consensus) focused body map
Method: single particle / : Rahil H, Webster MW, Weixlbaumer A

EMDB-51579:
30S mRNA delivery complex (consensus) focused platform map
Method: single particle / : Rahil H, Webster MW, Weixlbaumer A

EMDB-51580:
30S mRNA delivery complex (bS1 resolved) consensus map
Method: single particle / : Rahil H, Webster MW, Weixlbaumer A

EMDB-51581:
30S mRNA delivery complex (bS1 resolved) focused head map
Method: single particle / : Rahil H, Webster MW, Weixlbaumer A

EMDB-51582:
30S mRNA delivery complex (bS1 resolved) focused body map
Method: single particle / : Rahil H, Webster MW, Weixlbaumer A

EMDB-51583:
30S mRNA delivery complex (bS1 resolved) focused platform map
Method: single particle / : Rahil H, Webster MW, Weixlbaumer A

EMDB-51584:
30S mRNA delivery complex TEC resolved (30S only) consensus map
Method: single particle / : Rahil H, Webster MW, Weixlbaumer A

EMDB-51585:
30S mRNA delivery complex TEC resolved (30S only) focused head map
Method: single particle / : Rahil H, Webster MW, Weixlbaumer A

EMDB-51586:
30S mRNA delivery complex TEC resolved (30S only) focused body map
Method: single particle / : Rahil H, Webster MW, Weixlbaumer A

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