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Showing all 44 items for (author: quispe & jd)

EMDB-48183:
Antibody fragments from mAb475 and mAb824 bound to the adhesin protein FimH
Method: single particle / : Hvorecny KL, Magala P, Klevit RE, Kollman JM

EMDB-48184:
Antibody fragments from mAb824 and mAb926 bound to the adhesin protein FimH
Method: single particle / : Hvorecny KL, Magala P, Klevit RE, Kollman JM

EMDB-48185:
Antibody fragments from mAb21, mAb475, and mAb824 bound to the adhesin protein FimH
Method: single particle / : Hvorecny KL, Magala P, Klevit RE, Kollman JM

EMDB-48186:
Antibody fragments from mAb21 and mAb824 bound to the adhesin protein FimH containing alpha-methyl mannose
Method: single particle / : Hvorecny KL, Magala P, Klevit RE, Kollman JM

EMDB-48187:
Antibody fragments from mAb21 and mAb475 bound to the fimbrial tip protein, FimH
Method: single particle / : Hvorecny KL, Magala P, Klevit RE, Kollman JM

EMDB-71842:
Antibody fragment from mAb824 bound to the adhesin protein FimH.
Method: single particle / : Hvorecny KL, Magala P, Klevit RE, Kollman JM

EMDB-27279:
Human PRPS1 with Phosphate; Hexamer
Method: single particle / : Hvorecny KL, Kollman JM

EMDB-27280:
Human PRPS1 with Phosphate; Filament Interface
Method: single particle / : Hvorecny KL, Kollman JM

EMDB-27281:
Human PRPS1 with ADP; Hexamer
Method: single particle / : Hvorecny KL, Kollman JM

EMDB-27282:
Human PRPS1 with ADP; Filament Interface
Method: single particle / : Hvorecny KL, Kollman JM

EMDB-27283:
Human PRPS1 with Phosphate and ATP; Hexamer
Method: single particle / : Hvorecny KL, Kollman JM

EMDB-27284:
Human PRPS1 with Phosphate and ATP; Filament Interface
Method: single particle / : Hvorecny KL, Kollman JM

EMDB-27285:
Human PRPS1 with Phosphate, ATP, and R5P; Hexamer
Method: single particle / : Hvorecny KL, Kollman JM

EMDB-27286:
Human PRPS1 with Phosphate, ATP, and R5P; Filament Interface
Method: single particle / : Hvorecny KL, Kollman JM

EMDB-27287:
Human PRPS1 with Phosphate, ATP, and R5P; Hexamer with resolved catalytic loops
Method: single particle / : Hvorecny KL, Kollman JM

EMDB-27288:
Human PRPS1 with Phosphate, ATP, and R5P; Hexamer with resolved catalytic loops
Method: single particle / : Hvorecny KL, Kollman JM

EMDB-27289:
Human PRPS1 with Phosphate and PRPP; Hexamer
Method: single particle / : Hvorecny KL, Kollman JM

EMDB-27290:
Human PRPS1 with Phosphate and PRPP; Filament Interface
Method: single particle / : Hvorecny KL, Kollman JM

EMDB-27291:
Human PRPS1-E307A engineered mutation with Phosphate, ATP, and R5P; Hexamer
Method: single particle / : Hvorecny KL, Kollman JM

EMDB-27292:
Human PRPS1-E307A engineered mutation with Phosphate, ATP, and R5P; Symmetry-expanded Hexamer
Method: single particle / : Hvorecny KL, Kollman JM

EMDB-27293:
Human PRPS1-E307A engineered mutation with ADP; Hexamer
Method: single particle / : Hvorecny KL, Kollman JM

EMDB-27294:
Human PRPS1-E307A engineered mutation with ADP; Symmetry-expanded Hexamer 1
Method: single particle / : Hvorecny KL, Kollman JM

EMDB-27295:
Human PRPS1-E307A engineered mutation with ADP; Symmetry-expanded Hexamer 2
Method: single particle / : Hvorecny KL, Kollman JM

EMDB-23831:
Human CTPS1 bound to UTP, AMPPNP, and glutamine
Method: single particle / : Lynch EM, Dimattia MA

EMDB-23832:
Human CTPS1 bound to CTP
Method: single particle / : Lynch EM, Kollman JM

EMDB-23833:
Human CTPS2 bound to CTP
Method: single particle / : Lynch EM, Kollman JM

EMDB-23848:
Human CTPS1 bound to inhibitor R80
Method: single particle / : Lynch EM, Dimattia MA

EMDB-23850:
Human CTPS1 bound to inhibitor T35
Method: single particle / : Lynch EM, Dimattia MA

EMDB-23851:
Human CTPS2 bound to inhibitor R80
Method: single particle / : Lynch EM, Dimattia MA

EMDB-23852:
Human CTPS2 bound to inhibitor T35
Method: single particle / : Lynch EM, Dimattia MA

EMDB-23859:
Mouse CTPS1 bound to inhibitor R80
Method: single particle / : Lynch EM, Dimattia MA

EMDB-23865:
Mouse CTPS2 bound to inhibitor R80
Method: single particle / : Lynch EM, Dimattia MA

EMDB-23866:
Mouse CTPS2-I250T bound to inhibitor R80
Method: single particle / : Lynch EM, Dimattia MA

EMDB-23461:
cryoEM structure DrdV-DNA complex
Method: single particle / : Shen BW, Stoddard BL

EMDB-23543:
cryoEM structure DrdV-DNA complex
Method: single particle / : Shen BW, Stoddard BL

EMDB-0401:
MERS-CoV complex with human neutralizing LCA60 antibody Fab fragment (state 1)
Method: single particle / : Walls AC, Xiong X

EMDB-0402:
MERS-CoV S complex with human neutralizing LCA60 antibody Fab fragment (state 2)
Method: single particle / : Walls AC, Xiong X

EMDB-0403:
SARS-CoV complex with human neutralizing S230 antibody Fab fragment (state 1)
Method: single particle / : Walls AC, Xiong X

EMDB-0404:
SARS-CoV complex with human neutralizing S230 antibody Fab fragment (state 2)
Method: single particle / : Walls AC, Xiong X

PDB-6nb3:
MERS-CoV complex with human neutralizing LCA60 antibody Fab fragment (state 1)
Method: single particle / : Walls AC, Xiong X, Park YJ, Tortorici MA, Snijder S, Quispe J, Cameroni E, Gopal R, Mian D, Lanzavecchia A, Zambon M, Rey FA, Corti D, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-6nb4:
MERS-CoV S complex with human neutralizing LCA60 antibody Fab fragment (state 2)
Method: single particle / : Walls AC, Xiong X, Park YJ, Tortorici MA, Snijder S, Quispe J, Cameroni E, Gopal R, Mian D, Lanzavecchia A, Zambon M, Rey FA, Corti D, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-6nb6:
SARS-CoV complex with human neutralizing S230 antibody Fab fragment (state 1)
Method: single particle / : Walls AC, Xiong X, Park YJ, Tortorici MA, Snijder S, Quispe J, Cameroni E, Gopal R, Mian D, Lanzavecchia A, Zambon M, Rey FA, Corti D, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-6nb7:
SARS-CoV complex with human neutralizing S230 antibody Fab fragment (state 2)
Method: single particle / : Walls AC, Xiong X, Park YJ, Tortorici MA, Snijder S, Quispe J, Cameroni E, Gopal R, Mian D, Lanzavecchia A, Zambon M, Rey FA, Corti D, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-1200:
Automated cryoEM data acquisition and analysis of 284742 particles of GroEL.
Method: single particle / : Stagg SM, Pulokas J, Fellmann D, Cheng A, Quispe JD, Mallick SP, Avila RM, Carragher B, Potter CS

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Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

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Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

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Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

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Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

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Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

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EMN Searchsearch resultCSV, TSV, or JSON
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Related info.:EMN Search / EMN Statistics

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Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

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