[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 41 items for (author: pedro & cl)

EMDB-51109:
Mouse mitochondrial DNA polymerase gamma ternary complex in replication conformer
Method: single particle / : Valenzuela S, Falkenberg M

EMDB-51110:
Mouse mitochondrial DNA polymerase gamma ternary complex in intermediate conformer
Method: single particle / : Valenzuela S, Falkenberg M

EMDB-51111:
Mouse mitochondrial DNA polymerase gamma ternary complex in error-editing conformer (consensus map)
Method: single particle / : Valenzuela S, Falkenberg M

EMDB-51112:
Mouse mitochondrial DNA polymerase gamma ternary complex in error-editing conformer (Local refinement map of subunit A and DNA)
Method: single particle / : Valenzuela S, Falkenberg M

EMDB-51113:
Mouse mitochondrial DNA polymerase gamma ternary complex in error-editing conformer (local refinement of subunit B)
Method: single particle / : Valenzuela S, Falkenberg M

EMDB-51114:
Mouse mitochondrial DNA polymerase gamma ternary complex in error-editing conformer
Method: single particle / : Valenzuela S, Falkenberg M

EMDB-52815:
Chimeric mitochondrial DNA polymerase gamma ternary complex (mAhB) in replication conformer
Method: single particle / : Valenzuela S, Falkenberg M

EMDB-52816:
Chimeric mitochondrial DNA polymerase gamma ternary complex (mAhB) in human-like error-editing conformer (consensus map)
Method: single particle / : Valenzuela S, Falkenberg M

EMDB-52817:
Chimeric mitochondrial DNA polymerase gamma ternary complex (mAhB) in human-like error-editing conformer (local refinement map of subunit A and DNA)
Method: single particle / : Valenzuela S, Falkenberg M

EMDB-52818:
Chimeric mitochondrial DNA polymerase gamma ternary complex (mAhB) in human-like error-editing conformer (local refinement map of subunit B)
Method: single particle / : Valenzuela S, Falkenberg M

EMDB-52819:
Chimeric mitochondrial DNA polymerase gamma ternary complex (mAhB) in human-like error-editing conformer (composite)
Method: single particle / : Valenzuela S, Falkenberg M

EMDB-52820:
Chimeric mitochondrial DNA polymerase gamma ternary complex (mAhB) in mouse-like error-editing conformer (consensus map)
Method: single particle / : Valenzuela S, Falkenberg M

EMDB-52821:
Chimeric mitochondrial DNA polymerase gamma ternary complex (mAhB) in mouse-like error-editing conformer (local refinement map of subunit A and DNA)
Method: single particle / : Valenzuela S, Falkenberg M

EMDB-52822:
Chimeric mitochondrial DNA polymerase gamma ternary complex (mAhB) in mouse-like error-editing conformer (local refinement map of subunit B)
Method: single particle / : Valenzuela S, Falkenberg M

EMDB-52823:
Chimeric mitochondrial DNA polymerase gamma ternary complex (mAhB) in mouse-like error-editing conformer (composite)
Method: single particle / : Valenzuela S, Falkenberg M

EMDB-52824:
Chimeric mitochondrial DNA polymerase gamma ternary complex (hAmB) in replication conformer
Method: single particle / : Valenzuela S, Falkenberg M

EMDB-52825:
Chimeric mitochondrial DNA polymerase gamma ternary complex (hAmB) in mouse-like error-editing conformer (consensus map)
Method: single particle / : Valenzuela S, Falkenberg M

EMDB-52826:
Chimeric mitochondrial DNA polymerase gamma ternary complex (hAmB) in mouse-like error-editing conformer (local refinement map of subunit A and DNA)
Method: single particle / : Valenzuela S, Falkenberg M

EMDB-52827:
Chimeric mitochondrial DNA polymerase gamma ternary complex (hAmB) in mouse-like error-editing conformer (local refinement map of subunit B)
Method: single particle / : Valenzuela S, Falkenberg M

EMDB-52828:
Chimeric mitochondrial DNA polymerase gamma ternary complex (hAmB) in mouse-like error-editing conformer (composite)
Method: single particle / : Valenzuela S, Falkenberg M

PDB-9g74:
Mouse mitochondrial DNA polymerase gamma ternary complex in replication conformer
Method: single particle / : Valenzuela S, Falkenberg M

PDB-9g75:
Mouse mitochondrial DNA polymerase gamma ternary complex in intermediate conformer
Method: single particle / : Valenzuela S, Falkenberg M

PDB-9g77:
Mouse mitochondrial DNA polymerase gamma ternary complex in error-editing conformer (composite)
Method: single particle / : Valenzuela S, Falkenberg M

PDB-9ibx:
Chimeric mitochondrial DNA polymerase gamma ternary complex (mAhB) in replication conformer
Method: single particle / : Valenzuela S, Falkenberg M

PDB-9ibz:
Chimeric mitochondrial DNA polymerase gamma ternary complex (mAhB) in human-like error-editing conformer (composite)
Method: single particle / : Valenzuela S, Falkenberg M

PDB-9ic0:
Chimeric mitochondrial DNA polymerase gamma ternary complex (mAhB) in mouse-like error-editing conformer (composite)
Method: single particle / : Valenzuela S, Falkenberg M

PDB-9ic1:
Chimeric mitochondrial DNA polymerase gamma ternary complex (hAmB) in replication conformer
Method: single particle / : Valenzuela S, Falkenberg M

PDB-9ic3:
Chimeric mitochondrial DNA polymerase gamma ternary complex (hAmB) in mouse-like error-editing conformer (composite)
Method: single particle / : Valenzuela S, Falkenberg M

EMDB-40094:
17b10 fab in complex with full-length SARS-CoV-2 Spike G614 trimer
Method: single particle / : Kwon HJ, Zhang J, Kosikova M, Tang WC, Rodriguez UO, Peng HQ, Meseda CA, Pedro CL, Schmeisser F, Lu JM, Zhou B, Davis CT, Wentworth DE, Chen WH, Shriver MC, Pasetti MF, Weir JP, Chen B, Xie H

EMDB-40095:
17B10 fab in complex with up-RBD of SARS-CoV-2 Spike G614 trimer
Method: single particle / : Kwon HJ, Zhang J, Kosikova M, Tang WC, Rodriguez UO, Peng HQ, Meseda CA, Pedro CL, Schmeisser F, Lu JM, Zhou B, Davis CT, Wentworth DE, Chen WH, Shriver MC, Pasetti MF, Weir JP, Chen B, Xie H

PDB-8gjm:
17b10 fab in complex with full-length SARS-CoV-2 Spike G614 trimer
Method: single particle / : Kwon HJ, Zhang J, Kosikova M, Tang WC, Rodriguez UO, Peng HQ, Meseda CA, Pedro CL, Schmeisser F, Lu JM, Zhou B, Davis CT, Wentworth DE, Chen WH, Shriver MC, Pasetti MF, Weir JP, Chen B, Xie H

PDB-8gjn:
17B10 fab in complex with up-RBD of SARS-CoV-2 Spike G614 trimer
Method: single particle / : Kwon HJ, Zhang J, Kosikova M, Tang WC, Rodriguez UO, Peng HQ, Meseda CA, Pedro CL, Schmeisser F, Lu JM, Zhou B, Davis CT, Wentworth DE, Chen WH, Shriver MC, Pasetti MF, Weir JP, Chen B, Xie H

EMDB-16010:
Cryo-EM structure of SARS-CoV-2 spike (HexaPro variant) in complex with nanobody W25 (map 3, focus refinement on RBD, W25 and adjacent NTD)
Method: single particle / : Lauer S, Spahn CMT, Schwefel D

EMDB-16030:
Cryo-EM structure of SARS-CoV-2 spike (Omicron BA.1 variant) in complex with nanobody W25 (map 5, focus refinement on RBD, W25 and adjacent NTD)
Method: single particle / : Modhiran N, Lauer S, Spahn CMT, Watterson D, Schwefel D

PDB-8bev:
Cryo-EM structure of SARS-CoV-2 spike (HexaPro variant) in complex with nanobody W25 (map 3, focus refinement on RBD, W25 and adjacent NTD)
Method: single particle / : Lauer S, Spahn CMT, Schwefel D

PDB-8bgg:
Cryo-EM structure of SARS-CoV-2 spike (Omicron BA.1 variant) in complex with nanobody W25 (map 5, focus refinement on RBD, W25 and adjacent NTD)
Method: single particle / : Modhiran N, Lauer S, Spahn CMT, Watterson D, Schwefel D

EMDB-22829:
Human Tom70 in complex with SARS CoV2 Orf9b
Method: single particle / : QCRG Structural Biology Consortium

PDB-7kdt:
Human Tom70 in complex with SARS CoV2 Orf9b
Method: single particle / : QCRG Structural Biology Consortium

EMDB-1637:
Proteome organization in a genome-reduced bacterium -Topoisomerase of Mycoplasma pneumoniae -
Method: single particle / : Kuhner S, vanNoort V, Betts MJ, Leo-Macias A, Batisse C, Rode M, Yamada T, Maier T, Bader S, Beltran-Alvarez P, Castano-Diez D, Chen WH, Devos D, Guell Cargol M, Norambuena T, Racke I, Rybin V, Schmidt A, Yus E, Aebersold R, Herrmann R, Bottcher B, Frangakis AS, Russell RB, Serrano L, Bork P, Gavin AC

EMDB-1638:
Proteome organization in a genome-reduced bacterium -Gyrase of Mycoplasma pneumoniae -
Method: single particle / : Kuhner S, vanNoort V, Betts MJ, Leo-Macias A, Batisse C, Rode M, Yamada T, Maier T, Bader S, Beltran-Alvarez P, Castano-Diez D, Chen WH, Devos D, Guell Cargol M, Norambuena T, Racke I, Rybin V, Schmidt A, Yus E, Aebersold R, Herrmann R, Bottcher B, Frangakis AS, Russell RB, Serrano L, Bork P, Gavin AC

EMDB-1639:
Proteome organization in a genome-reduced bacterium -RNA-polymeraseof Mycoplasma pneumoniae -
Method: single particle / : Kuhner S, vanNoort V, Betts MJ, Leo-Macias A, Batisse C, Rode M, Yamada T, Maier T, Bader S, Beltran-Alvarez P, Castano-Diez D, Chen WH, Devos D, Guell Cargol M, Norambuena T, Racke I, Rybin V, Schmidt A, Yus E, Aebersold R, Herrmann R, Bottcher B, Frangakis AS, Russell RB, Serrano L, Bork P, Gavin AC

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more