[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 25 items for (author: pan & zl)

EMDB-61584:
Tetrahymena Ribozyme L-16 complex with ZPT-22
Method: single particle / : Pan ZL, Hu H, Ma HY, Su ZM

EMDB-61517:
BtHKU5-CoV-2-441 Spike RBD domain binding to hACE2
Method: single particle / : Zhang W, Peng W, Chen HY

EMDB-28663:
Herpes simplex virus 1 polymerase holoenzyme bound to DNA and foscarnet (pre-translocation state)
Method: single particle / : Pan J, Abraham J, Coen DM, Shankar S, Yang P, Hogle J

EMDB-28664:
Herpes simplex virus 1 DNA polymerase holoenzyme bound to DNA template and primer, dNTP-free (editing mode)
Method: single particle / : Pan J, Abraham J, Coen DM, Shankar S, Yang P, Hogle J

EMDB-42887:
Herpes simplex virus 1 polymerase holoenzyme bound to DNA in both open/closed conformations
Method: single particle / : Pan J, Abraham J, Coen DM, Shankar S, Yang P, Hogle J

EMDB-42888:
Herpes simplex virus 1 polymerase holoenzyme bound to DNA and DTTP in closed conformation
Method: single particle / : Pan J, Abraham J, Coen DM, Shankar S, Yang P, Hogle J

EMDB-42889:
Herpes simplex virus 1 polymerase holoenzyme bound to mismatched DNA in editing conformation
Method: single particle / : Pan J, Abraham J, Coen DM, Shankar S, Yang P, Hogle J

EMDB-42890:
Herpes simplex virus 1 polymerase holoenzyme bound to DNA and acyclovir triphosphate in closed conformation
Method: single particle / : Pan J, Abraham J, Coen DM, Shankar S, Yang P, Hogle J

EMDB-42891:
Herpes simplex virus 1 polymerase W781V mutant holoenzyme bound to DNA in editing conformation
Method: single particle / : Pan J, Abraham J, Coen DM, Shankar S, Yang P, Hogle J

PDB-8exx:
Herpes simplex virus 1 polymerase holoenzyme bound to DNA and foscarnet (pre-translocation state)
Method: single particle / : Pan J, Abraham J, Coen DM, Shankar S, Yang P, Hogle J

PDB-8v1q:
Herpes simplex virus 1 polymerase holoenzyme bound to DNA in both open/closed conformations
Method: single particle / : Pan J, Abraham J, Coen DM, Shankar S, Yang P, Hogle J

PDB-8v1r:
Herpes simplex virus 1 polymerase holoenzyme bound to DNA and DTTP in closed conformation
Method: single particle / : Pan J, Abraham J, Coen DM, Shankar S, Yang P, Hogle J

PDB-8v1s:
Herpes simplex virus 1 polymerase holoenzyme bound to mismatched DNA in editing conformation
Method: single particle / : Pan J, Abraham J, Coen DM, Shankar S, Yang P, Hogle J

PDB-8v1t:
Herpes simplex virus 1 polymerase holoenzyme bound to DNA and acyclovir triphosphate in closed conformation
Method: single particle / : Pan J, Abraham J, Coen DM, Shankar S, Yang P, Hogle J

EMDB-38966:
Cryo-EM structure of human urate transporter GLUT9 bound to substrate urate
Method: single particle / : Pan XJ, Shen ZL, Xu L, Huang GXY

EMDB-38968:
Cryo-EM structure of human urate transporter GLUT9 bound to inhibitor apigenin
Method: single particle / : Pan XJ, Shen ZL, Xu L, Huang GXY

EMDB-27898:
Cryo-EM structure of human glycerol-3-phosphate acyltransferase 1 (GPAT1) in complex with 2-oxohexadecyl-CoA
Method: single particle / : Johnson ZL, Wasilko DJ, Ammirati M, Chang JS, Han S, Wu H

EMDB-27899:
Cryo-EM structure of human glycerol-3-phosphate acyltransferase 1 (GPAT1) in complex with CoA and palmitoyl-LPA
Method: single particle / : Wasilko DJ, Johnson ZL, Ammirati M, Chang JS, Han S, Wu H

EMDB-23494:
Cryo-EM of the SLFN12-PDE3A complex: PDE3A body refinement
Method: single particle / : Fuller JR, Garvie CW, Lemke CT

EMDB-23495:
Cryo-EM of the SLFN12-PDE3A complex: Consensus subset model
Method: single particle / : Fuller JR, Garvie CW, Lemke CT

EMDB-23496:
Cryo-EM of the SLFN12-PDE3A complex: SLFN12 body refinement
Method: single particle / : Fuller JR, Garvie CW, Lemke CT

PDB-7lrc:
Cryo-EM of the SLFN12-PDE3A complex: PDE3A body refinement
Method: single particle / : Fuller JR, Garvie CW, Lemke CT

PDB-7lrd:
Cryo-EM of the SLFN12-PDE3A complex: Consensus subset model
Method: single particle / : Fuller JR, Garvie CW, Lemke CT

PDB-7lre:
Cryo-EM of the SLFN12-PDE3A complex: SLFN12 body refinement
Method: single particle / : Fuller JR, Garvie CW, Lemke CT

EMDB-4092:
Tomographic reconstruction of ex vivo mammalian prions
Method: electron tomography / : Terry C, Wenborn A, Gros N, Sells J, Joiner S, Hosszu LLP, Tattum MH, Panico S, Clare DK, Collinge J, Saibil HR, Wadsworth JDF

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more