[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 539 items for (author: oka & gu)

EMDB-54312:
VPS34-CII (VPS34 199-REIE-202 to 199-AAAA-202 mutant) bound to RAB5A (Q79L, focused refinement on the adaptor arm)
Method: single particle / : Spokaite S, Ohashi Y, Bourguet M, Dessus AN, Williams RL

EMDB-54313:
VPS34-CII (VPS34 199-REIE-202 to 199-AAAA-202 mutant) bound to RAB5A (Q79L, focused refinement on the kinase arm)
Method: single particle / : Spokaite S, Ohashi Y, Bourguet M, Dessus AN, Williams RL

EMDB-54314:
VPS34-CII (VPS34 199-REIE-202 to 199-AAAA-202 mutant) bound to RAB5A (Q79L), focused refinement on the base of the complex
Method: single particle / : Spokaite S, Ohashi Y, Bourguet M, Dessus AN, Williams RL

EMDB-54315:
VPS34-CII (VPS34 199-REIE-202 to 199-AAAA-202 mutant) bound to RAB5A (Q79L, focused refinement on the interface between RAB5A and VPS34)
Method: single particle / : Spokaite S, Ohashi Y, Bourguet M, Dessus AN, Williams RL

EMDB-54316:
VPS34-CII (VPS34 199-REIE-202 > 199-AAAA-202 mutant) bound to RAB5A-GTP (Q79L), consensus refinement
Method: single particle / : Spokaite S, Ohashi Y, Bourguet M, Dessus AN, Williams RL

EMDB-54317:
VPS34-CII (VPS34 199-REIE-202 > 199-AAAA-202 mutant) bound to RAB5A-GTP (Q79L); unsharpened composite map
Method: single particle / : Spokaite S, Ohashi Y, Bourguet M, Dessus AN, Williams RL

EMDB-54318:
VPS34-CII (VPS34 199-REIE-202 to 199-ERIR-202 mutant) bound to RAB5A (Q79L) on the VPS15 subunit, focused refinement on the kinase arm
Method: single particle / : Spokaite S, Ohashi Y, Bourguet M, Dessus AN, Williams RL

EMDB-54319:
VPS34-CII (VPS34 199-REIE-202 to 199-ERIR-202 mutant) bound to RAB5A (Q79L) on the VPS15 subunit, focused refinement on the adaptor arm
Method: single particle / : Spokaite S, Ohashi Y, Bourguet M, Dessus AN, Williams RL

EMDB-54320:
VPS34-CII (VPS34 199-REIE-202 to 199-ERIR-202 mutant) bound to RAB5A (Q79L) on the VPS15 subunit, focused refinement of the RAB5A interface with VPS15
Method: single particle / : Spokaite S, Ohashi Y, Bourguet M, Dessus AN, Williams RL

EMDB-54321:
VPS34-CII (VPS34 199-REIE-202 to 199-ERIR-202 mutant) bound to RAB5A (Q79L) on the VPS15 subunit, consensus refinement
Method: single particle / : Spokaite S, Ohashi Y, Bourguet M, Dessus AN, Williams RL

EMDB-54322:
VPS34-CII (VPS34 199-REIE-202 to 199-ERIR-202 mutant) bound to RAB5A (Q79L) on the VPS15 subunit; unsharpened composite map
Method: single particle / : Spokaite S, Ohashi Y, Bourguet M, Dessus AN, Williams RL

EMDB-54358:
VPS34-CII (VPS34 199-REIE-202 to 199-AAAA-202 mutant) bound to RAB5A (Q79L), primary composite map processed with CryoTEN
Method: single particle / : Spokaite S, Ohashi Y, Dessus AN, Bourguet M, Williams RL

EMDB-54359:
VPS34-CII (VPS34 199-REIE-202 to 199-ERIR-202 mutant) bound to RAB5A (Q79L) on the VPS15 subunit, composite map processed with CryoTEN.
Method: single particle / : Spokaite S, Ohashi Y, Dessus AN, Bourguet M, Williams RL

EMDB-54361:
Apo VPS34-CII (VPS34/VPS15/BECLIN1/UVRAG), consensus refinement map processed with CryoTEN
Method: single particle / : Spokaite S, Ohashi Y, Dessus AN, Bourguet M, Williams RL

EMDB-54362:
VPS34-CII bound to RAB5A-GTP 1-212 (C19S, C63S, Q79L) on the VPS34 subunit, primary map processed with CryoTEN
Method: single particle / : Spokaite S, Ohashi Y, Dessus AN, Bourguet M, Williams RL

EMDB-54363:
VPS34-CII bound to RAB5A-GTP 1-212 (C19S, C63S, Q79L) on the VPS15 subunit, primary map processed with CryoTEN
Method: single particle / : Spokaite S, Ohashi Y, Dessus AN, Bourguet M, Williams RL

EMDB-54364:
VPS34-CII (VPS34/VPS15/BECLIN1/UVRAG) bound to RAB5A (Q79L) on the VPS34 and VPS15 subunits, primary map processed with CryoTEN
Method: single particle / : Spokaite S, Ohashi Y, Dessus AN, Bourguet M, Williams RL

EMDB-54560:
Human complex II-BATS bound to membrane-attached Rab5a-GTP
Method: subtomogram averaging / : Dessus AN, Tremel S, Williams RL

PDB-9rx5:
VPS34-CII (VPS34 199-REIE-202 to 199-AAAA-202 mutant) bound to RAB5A (Q79L)
Method: single particle / : Spokaite S, Ohashi Y, Dessus AN, Bourguet M, Williams RL

PDB-9rx6:
VPS34-CII (VPS34 199-REIE-202 to 199-ERIR-202 mutant) bound to RAB5A (Q79L) on the VPS15 subunit
Method: single particle / : Spokaite S, Ohashi Y, Dessus AN, Bourguet M, Williams RL

PDB-9rx8:
Apo VPS34-CII (VPS34/VPS15/BECLIN1/UVRAG)
Method: single particle / : Spokaite S, Ohashi Y, Dessus AN, Bourguet M, Williams RL

PDB-9rx9:
VPS34-CII bound to RAB5A-GTP 1-212 (C19S, C63S, Q79L) on the VPS34 subunit
Method: single particle / : Spokaite S, Ohashi Y, Dessus AN, Bourguet M, Williams RL

PDB-9rxa:
VPS34-CII bound to RAB5A-GTP 1-212 (C19S, C63S, Q79L) on the VPS15 subunit
Method: single particle / : Spokaite S, Ohashi Y, Dessus AN, Bourguet M, Williams RL

PDB-9rxb:
VPS34-CII (VPS34/VPS15/BECLIN1/UVRAG) bound to RAB5A (Q79L) on the VPS34 and VPS15 subunits
Method: single particle / : Spokaite S, Ohashi Y, Dessus AN, Bourguet M, Williams RL

EMDB-75296:
Single particle reconstruction of PilU from Vibrio cholerae El Tor E7946, form 1
Method: single particle / : Guo Y, Shulka S, Klose T, Tokars V, Mondragon A, Borek D, Satchell K

EMDB-75297:
Single particle reconstruction of PilU from Vibrio cholerae El Tor E7946, form 2
Method: single particle / : Guo Y, Shukla S, Klose T, Tokars V, Mondragon A, Borek D, Satchell K

EMDB-75298:
Single particle reconstruction of PilU from Vibrio cholerae El Tor E7946, form 3
Method: single particle / : Guo Y, Shulka S, Klose T, Tokars V, Mondragon A, Borek D, Satchell K, Center for Structural Biology of Infectious Diseases (CSBID)

EMDB-75299:
Single particle reconstruction of PilU from Vibrio cholerae El Tor E7946, form 4
Method: single particle / : Guo Y, Shulka S, Klose T, Tokars V, Mondragon A, Borek D, Satchell K

PDB-10my:
Single particle reconstruction of PilU from Vibrio cholerae El Tor E7946, form 1
Method: single particle / : Guo Y, Shulka S, Klose T, Tokars V, Mondragon A, Borek D, Satchell K, Center for Structural Biology of Infectious Diseases (CSBID)

PDB-10mz:
Single particle reconstruction of PilU from Vibrio cholerae El Tor E7946, form 2
Method: single particle / : Guo Y, Shukla S, Klose T, Tokars V, Mondragon A, Borek D, Satchell K, Center for Structural Biology of Infectious Diseases (CSBID)

PDB-10na:
Single particle reconstruction of PilU from Vibrio cholerae El Tor E7946, form 3
Method: single particle / : Guo Y, Shulka S, Klose T, Tokars V, Mondragon A, Borek D, Satchell K, Center for Structural Biology of Infectious Diseases (CSBID)

PDB-10nb:
Single particle reconstruction of PilU from Vibrio cholerae El Tor E7946, form 4
Method: single particle / : Guo Y, Shulka S, Klose T, Tokars V, Mondragon A, Borek D, Satchell K, Center for Structural Biology of Infectious Diseases (CSBID)

EMDB-64322:
Giraffe KIF5A motor domain in nucleotide free state bound to microtubule
Method: helical / : Imasaki T, Yamagishi Y, Shigematsu H, Nitta R

EMDB-66042:
Open State of Apo-P-Glycoprotein
Method: single particle / : Hamaguchi-Suzuki N, Kanaoka Y, Ogasawara S, Murata T, Uchihashi T

EMDB-66043:
Closed State of Apo-P-Glycoprotein.
Method: single particle / : Hamaguchi-Suzuki N, Kanaoka Y, Ogasawara S, Murata T, Uchihashi T

EMDB-63767:
Cryo-EM structure of wild-type SaCas9-guide RNA-mismatched target DNA complex
Method: single particle / : Omura SN, Nakagawa R, Yamashita K, Nishimasu H, Nureki O

EMDB-63768:
Cryo-EM structure of eSaCas9-NNG-guide RNA-mismatched target DNA complex
Method: single particle / : Omura SN, Nakagawa R, Yamashita K, Nishimasu H, Nureki O

PDB-9mb6:
Cryo-EM structure of wild-type SaCas9-guide RNA-mismatched target DNA complex
Method: single particle / : Omura SN, Nakagawa R, Yamashita K, Nishimasu H, Nureki O

PDB-9mb7:
Cryo-EM structure of eSaCas9-NNG-guide RNA-mismatched target DNA complex
Method: single particle / : Omura SN, Nakagawa R, Yamashita K, Nishimasu H, Nureki O

EMDB-55771:
Hepatitis A Virus in Complex with LDLR Receptor
Method: single particle / : Zhao Y, Stuart D, Lemon SM, Duyvesteyn H, Shah P, Fry E

EMDB-55772:
Hepatitis A Virus in complex with GD1a
Method: single particle / : Zhao Y, Stuart D, Lemon SM, Duyvesteyn H, Shah P, Fry E

PDB-9tbh:
Hepatitis A Virus in Complex with LDLR Receptor
Method: single particle / : Zhao Y, Stuart D, Lemon SM, Duyvesteyn H, Shah P, Fry E

PDB-9tbi:
Hepatitis A Virus in complex with GD1a
Method: single particle / : Zhao Y, Stuart D, Lemon SM, Duyvesteyn H, Shah P, Fry E

EMDB-68805:
Structure of Arabidopsis SNX1 (Class l, 7-fold)
Method: helical / : Li YB, Tao R, Zhang H, Wen XK, Leung SKP, Lau WCY, Jiang LW, Cui Y

EMDB-68806:
Structure of Arabidopsis SNX1 (Class ll, 6-fold)
Method: helical / : Li YB, Tao R, Zhang H, Wen XK, Leung SKP, Lau WCY, Jiang LW, Cui Y

PDB-23as:
Structure of Arabidopsis SNX1 (Class l, 7-fold)
Method: helical / : Li YB, Tao R, Zhang H, Wen XK, Leung SKP, Lau WCY, Jiang LW, Cui Y

PDB-23at:
Structure of Arabidopsis SNX1 (Class ll, 6-fold)
Method: helical / : Li YB, Tao R, Zhang H, Wen XK, Leung SKP, Lau WCY, Jiang LW, Cui Y

EMDB-49315:
Polyclonal immune complex of Fab from serum of animal 1 at week 23 binding H1 HA
Method: single particle / : Leon AN, Richey ST, Ferguson JA, Han J, Ward AB

EMDB-49316:
Polyclonal immune complex of Fab from serum of animal 1 at week 35 binding H1 HA
Method: single particle / : Richey ST, Leon AN, Ferguson JA, Han J, Ward AB

EMDB-49317:
Polyclonal immune complex of Fab from serum of animal 2 at week 35 binding H1 HA
Method: single particle / : Ferguson JA, Leon AN, Richey ST, Han J, Ward AB

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more