[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 4,011 items for (author: ning & j)

EMDB-63614:
Structure-based discovery of potent agonists of the orphan receptor GPR139
Method: single particle / : Cabezadevaca I, Trapkov B, Shen L, Pezeshki M, Zhang XH, Liu Z, Hauser AS, Carlsson J

PDB-9m42:
Structure-based discovery of potent agonists of the orphan receptor GPR139
Method: single particle / : Cabezadevaca I, Trapkov B, Shen L, Pezeshki M, Zhang XH, Liu Zj, Hauser AS, Carlsson J

EMDB-65405:
The cryo-EM structure of gRNA-bound SPARDA complex
Method: single particle / : Li Y, Jiang Y, Zheng Q, Li S

EMDB-65406:
Helical structure of gRNA-tDNA SPARDA complex
Method: helical / : Li Y, Zheng Q, Li S, Jiang Y

PDB-9vx1:
The cryo-EM structure of gRNA-bound SPARDA complex
Method: single particle / : Li Y, Jiang Y, Zheng Q, Li S

PDB-9vx6:
Helical structure of gRNA-tDNA SPARDA complex
Method: helical / : Li Y, Zheng Q, Li S, Jiang Y

EMDB-49539:
Raw consensus map of mouse RyR1 (Ca2+/CFF/ATP dataset; open pore)
Method: single particle / : Weninger G, Marks AR

EMDB-49540:
Constituent EM map: Focused refinement on TaF/TMD/CTD of mouse RyR1 (Ca2+/CFF/ATP dataset; open pore)
Method: single particle / : Weninger G, Marks AR

EMDB-49541:
Constituent EM map: Focused refinement on S2S3 of mouse RyR1 (Ca2+/CFF/ATP dataset; open pore)
Method: single particle / : Weninger G, Marks AR

EMDB-49542:
Raw consensus map of mouse RyR1 (Ca2+/CFF/ATP dataset; closed pore)
Method: single particle / : Weninger G, Marks AR

EMDB-49543:
Constituent EM map: Focused refinement on TaF/TMD/CTD of mouse RyR1 (Ca2+/CFF/ATP dataset; closed pore)
Method: single particle / : Weninger G, Marks AR

EMDB-49544:
Constituent EM map: Focused refinement on S2S3 of mouse RyR1 (Ca2+/CFF/ATP dataset; closed pore)
Method: single particle / : Weninger G, Marks AR

EMDB-49545:
Raw consensus map of mouse RyR1 with simvastatin (Ca2+/CFF/ATP dataset; open pore)
Method: single particle / : Weninger G, Marks AR

EMDB-49546:
Constituent EM map: Focused refinement on TaF/TMD/CTD of mouse RyR1 with simvastatin (Ca2+/CFF/ATP dataset; open pore)
Method: single particle / : Weninger G, Marks AR

EMDB-49547:
Constituent EM map: Focused refinement on S2S3 of mouse RyR1 with simvastatin (Ca2+/CFF/ATP dataset; open pore)
Method: single particle / : Weninger G, Marks AR

EMDB-49548:
Raw consensus map of mouse RyR1 with simvastatin (Ca2+/CFF/ATP dataset; closed pore)
Method: single particle / : Weninger G, Marks AR

EMDB-49549:
Constituent EM map: Focused refinement on TaF/TMD/CTD of mouse RyR1 with simvastatin (Ca2+/CFF/ATP dataset; closed pore)
Method: single particle / : Weninger G, Marks AR

EMDB-49550:
Constituent EM map: Focused refinement on S2S3 of mouse RyR1 with simvastatin (Ca2+/CFF/ATP dataset; closed pore)
Method: single particle / : Weninger G, Marks AR

EMDB-49551:
Raw consensus map of mouse RyR1 (including auxiliary transmembrane helix TMx; EGTA-only dataset)
Method: single particle / : Weninger G, Marks AR

EMDB-49552:
Constituent EM map: Focused refinement on TaF/TMD/CTD of mouse RyR1 (Ca2+/CFF/ATP dataset; closed pore)
Method: single particle / : Weninger G, Marks AR

EMDB-49553:
Constituent EM map: Focused refinement on S2S3 of mouse RyR1 (including auxiliary transmembrane helix TMx; EGTA-only dataset)
Method: single particle / : Weninger G, Marks AR

EMDB-64144:
Cryo-EM Structure of Apo-G6PT1
Method: single particle / : Shuai G, Xia Y, Qian W

EMDB-64147:
Cryo-EM Structure of G6PT1-apo monomer in pi buffer
Method: single particle / : Shuai G, Xia Y, Qian W

EMDB-64148:
Cryo-EM Structure of G6PT1 bound with GlcN6P
Method: single particle / : Shuai G, Xia Y, Qian W

EMDB-66194:
Cryo-EM Structure of G6PT1 treated with G6P
Method: single particle / : Shuai G, Xia Y, Qian W

EMDB-66215:
Cryo-EM structure of Pi-free G6PT1 treated with GlcN6P
Method: single particle / : Shuai G, Xia Y, Qian W

EMDB-66658:
Cryo-EM Structure of G6PT1 bound with lower pi
Method: single particle / : Shuai G, Xia Y, Qian W

EMDB-66660:
Cryo-EM Structure of G6PT1 without GlcN6P
Method: single particle / : Shuai G, Xia Y, Qian W

EMDB-66661:
Cryo-EM Structure of G6PT1 bound with upper pi
Method: single particle / : Shuai G, Xia Y, Qian W

PDB-9ugu:
Cryo-EM Structure of Apo-G6PT1
Method: single particle / : Shuai G, Xia Y, Qian W

PDB-9ugx:
Cryo-EM Structure of G6PT1-apo monomer in pi buffer
Method: single particle / : Shuai G, Xia Y, Qian W

PDB-9ugy:
Cryo-EM Structure of G6PT1 bound with GlcN6P
Method: single particle / : Shuai G, Xia Y, Qian W

PDB-9ws8:
Cryo-EM Structure of G6PT1 treated with G6P
Method: single particle / : Shuai G, Xia Y, Qian W

PDB-9wt2:
Cryo-EM structure of Pi-free G6PT1 treated with GlcN6P
Method: single particle / : Shuai G, Xia Y, Qian W

PDB-9x8x:
Cryo-EM Structure of G6PT1 bound with lower pi
Method: single particle / : Shuai G, Xia Y, Qian W

PDB-9x95:
Cryo-EM Structure of G6PT1 without GlcN6P
Method: single particle / : Shuai G, Xia Y, Qian W

PDB-9x97:
Cryo-EM Structure of G6PT1 bound with upper pi
Method: single particle / : Shuai G, Xia Y, Qian W

EMDB-73147:
Constituent EM map: Focused refinement on NTD+SPRY+Calstabin-1 of mouse RyR1 (including auxiliary transmembrane helix TMx; EGTA-only dataset)
Method: single particle / : Weninger G, Marks AR

EMDB-73148:
Constituent EM map: Focused refinement on JSol+CSol of mouse RyR1 (including auxiliary transmembrane helix TMx; EGTA-only dataset)
Method: single particle / : Weninger G, Marks AR

EMDB-73149:
Constituent EM map: Focused refinement on BSol of mouse RyR1 (including auxiliary transmembrane helix TMx; EGTA-only dataset)
Method: single particle / : Weninger G, Marks AR

EMDB-73151:
Constituent EM map: Focused refinement on Ry12 of mouse RyR1 (including auxiliary transmembrane helix TMx; EGTA-only dataset)
Method: single particle / : Weninger G, Marks AR

EMDB-73152:
Constituent EM map: Focused refinement on Ry34 of mouse RyR1 (including auxiliary transmembrane helix TMx; EGTA-only dataset)
Method: single particle / : Weninger G, Marks AR

EMDB-73154:
Constituent EM map: Focused refinement on NTD+SPRY+Calstabin-1 of mouse RyR1 (Ca2+/CFF/ATP dataset; closed pore)
Method: single particle / : Weninger G, Marks AR

EMDB-73155:
Constituent EM map: Focused refinement on JSol+CSol of mouse RyR1 (Ca2+/CFF/ATP dataset; closed pore)
Method: single particle / : Weninger G, Marks AR

EMDB-73156:
Constituent EM map: Focused refinement on BSol of mouse RyR1 (Ca2+/CFF/ATP dataset; closed pore)
Method: single particle / : Weninger G, Marks AR

EMDB-73157:
Constituent EM map: Focused refinement on Ry12 of mouse RyR1 (Ca2+/CFF/ATP dataset; closed pore)
Method: single particle / : Weninger G, Marks AR

EMDB-73158:
Constituent EM map: Focused refinement on Ry34 of mouse RyR1 (Ca2+/CFF/ATP dataset; closed pore)
Method: single particle / : Weninger G, Marks AR

EMDB-73159:
Constituent EM map: Focused refinement on NTD+SPRY+Calstabin-1 of mouse RyR1 (Ca2+/CFF/ATP dataset; open pore)
Method: single particle / : Weninger G, Marks AR

EMDB-73160:
Constituent EM map: Focused refinement on JSol+CSol of mouse RyR1 (Ca2+/CFF/ATP dataset; open pore)
Method: single particle / : Weninger G, Marks AR

EMDB-73161:
Constituent EM map: Focused refinement on BSol of mouse RyR1 (Ca2+/CFF/ATP dataset; open pore)
Method: single particle / : Weninger G, Marks AR

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more