[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 16,549 items for (author: ni & x)

EMDB-79039:
Australian bat lyssavirus glycoprotein PH domain in complex with broadly neutralizing human antibodies A6 and RVC20
Method: single particle / : Xu K, Xu Y

PDB-38pm:
Australian bat lyssavirus glycoprotein PH domain in complex with broadly neutralizing human antibodies A6 and RVC20
Method: single particle / : Xu K, Xu Y

EMDB-72398:
Cryo EM Structure of Full Length mGluR8 in Complex with Beta-Arrestin-1 Bound to Agonist L-AP4 and PAM VU6005649
Method: single particle / : Marx DC, Levitz JT

EMDB-72399:
Cryo EM Structure of Full lengthmGluR8 Bound to Agonist L-AP4 and PAM VU6005649 in complex with G proteins
Method: single particle / : Marx DC, Levitz JT

PDB-9y1m:
Cryo EM Structure of Full Length mGluR8 in Complex with Beta-Arrestin-1 Bound to Agonist L-AP4 and PAM VU6005649
Method: single particle / : Marx DC, Levitz JT

PDB-9y1n:
Cryo EM Structure of Full lengthmGluR8 Bound to Agonist L-AP4 and PAM VU6005649 in complex with G proteins
Method: single particle / : Marx DC, Levitz JT

PDB-32fd:
Cryo-EM structure of cariprazine-bound D3 dopamine receptor with mini-Go (alternative conformation)
Method: single particle / : Yardeni EH, Kiss DJ, Keseru GM, Shalev-Benami M

EMDB-57884:
PLD-fold vaccinia virus endonuclease K4 with DNA
Method: single particle / : Groger H, Burmeister WP, Tarbouriech N

PDB-30mn:
PLD-fold vaccinia virus endonuclease K4 with DNA
Method: single particle / : Groger H, Burmeister WP, Tarbouriech N

EMDB-55610:
In vitro reconstituted METAP1-NAA40-NAC bound 80S - State 1
Method: single particle / : Guan D, Berninghausen O, Beckmann R

EMDB-55612:
NAA40-NAC bound active human 80S
Method: single particle / : Guan D, Berninghausen O, Beckmann R

EMDB-55613:
NAA40-NAC bound human 80S (combined translation states)
Method: single particle / : Guan D, Berninghausen O, Beckmann R

EMDB-55616:
In vitro reconstituted METAP1-NAA40-NAC bound 80S - State 2
Method: single particle / : Guan D, Berninghausen O, Beckmann R

PDB-9t69:
In vitro reconstituted METAP1-NAA40-NAC bound 80S - State 1
Method: single particle / : Guan D, Berninghausen O, Beckmann R

PDB-9t6c:
NAA40-NAC bound active human 80S
Method: single particle / : Guan D, Berninghausen O, Beckmann R

PDB-9t6d:
NAA40-NAC bound human 80S (combined translation states)
Method: single particle / : Guan D, Berninghausen O, Beckmann R

PDB-9t6i:
In vitro reconstituted METAP1-NAA40-NAC bound 80S - State 2
Method: single particle / : Guan D, Berninghausen O, Beckmann R

EMDB-79047:
Microtubule bundles in metaphase RPE1 spindles
Method: electron tomography / : Conway W, Bobe D, Fabig G, Zimyanin V, de Marco A, Redemann S

EMDB-78853:
RNA polymerase ribozyme 85h34 replication complex, subclass 7 structure
Method: single particle / : Strutzenberg TS, Lyumkis D

EMDB-67556:
CryoEM structure of H5N1 A/Texas/37/2024 HA bound to 3CF5 Fab
Method: single particle / : Niu C, Liu B, Li Z, Xiong X

EMDB-67557:
CryoEM structure of H5N1 A/Texas/37/2024 HA bound to 3BG3 IgG
Method: single particle / : Niu C, Liu B, Li Z, Xiong X

PDB-21bo:
CryoEM structure of H5N1 A/Texas/37/2024 HA bound to 3CF5 Fab
Method: single particle / : Niu C, Liu B, Li Z, Xiong X

PDB-21bp:
CryoEM structure of H5N1 A/Texas/37/2024 HA bound to 3BG3 IgG
Method: single particle / : Niu C, Liu B, Li Z, Xiong X

EMDB-76770:
The AAV2 capsid in complex with IgG-Fab#3-2
Method: single particle / : Zachery J, Mietzsch M, McKenna R

EMDB-76771:
The AAV2 capsid in complex with IgA-Fab#3-2
Method: single particle / : Zachery J, Mietzsch M, McKenna R

EMDB-76772:
The AAV2 capsid in complex with IgG-Fab#3-4
Method: single particle / : Zachery J, Mietzsch M, McKenna R

EMDB-76773:
The AAV2 capsid in complex with IgA-Fab#3-4
Method: single particle / : Zachery J, Mietzsch M, McKenna R

EMDB-78289:
NPC1-NPC2 complex with bis-sterol molecule JM046, pH 5.5
Method: single particle / : Wu X, Yan N

EMDB-78290:
NPC1 expressed from Sf9 and purified at pH 5.5
Method: single particle / : Wu X, Yan N

EMDB-55686:
Murine RNF213 bound to maltoheptaose
Method: single particle / : Yip MCJ, Naydenova K, Randow F

EMDB-55687:
Murine RNF213 bound to maltoheptaose (Consensus refinement)
Method: single particle / : Yip MCJ, Naydenova K, Randow F

EMDB-55688:
Murine RNF213 bound to maltoheptaose (Focused refinement of ATPase domain)
Method: single particle / : Yip MCJ, Naydenova K, Randow F

EMDB-55689:
Murine RNF213 bound to maltoheptaose (Focused refinement of stalk)
Method: single particle / : Yip MCJ, Naydenova K, Randow F

EMDB-55690:
Murine RNF213 bound to maltoheptaose (Focused refinement of top of stalk)
Method: single particle / : Yip MCJ, Naydenova K, Randow F

EMDB-55691:
Murine RNF213 bound to maltoheptaose (Focused refinement of CBM20 domain)
Method: single particle / : Yip MCJ, Naydenova K, Randow F

EMDB-55692:
Murine RNF213 bound to maltoheptaose (Focused refinement of E3 module)
Method: single particle / : Yip MCJ, Naydenova K, Randow F

EMDB-55693:
Murine RNF213 bound to maltoheptaose (Focused refinement of E3 shell)
Method: single particle / : Yip MCJ, Naydenova K, Randow F

EMDB-55694:
Murine RNF213
Method: single particle / : Yip MCJ, Naydenova K, Randow F

EMDB-55695:
Murine RNF213 (Consensus refinement)
Method: single particle / : Yip MCJ, Naydenova K, Randow F

EMDB-55696:
Murine RNF213 (Focused refinement of ATPase domain)
Method: single particle / : Yip MCJ, Naydenova K, Randow F

EMDB-55697:
Murine RNF213 (Focused refinement of stalk)
Method: single particle / : Yip MCJ, Naydenova K, Randow F

EMDB-55698:
Murine RNF213 (Focused refinement of top of stalk)
Method: single particle / : Yip MCJ, Naydenova K, Randow F

EMDB-55699:
Murine RNF213 (Focused refinement of CBM20 domain)
Method: single particle / : Yip MCJ, Naydenova K, Randow F

EMDB-55700:
Murine RNF213 (Focused refinement of E3 module)
Method: single particle / : Yip MCJ, Naydenova K, Randow F

EMDB-55701:
Murine RNF213 (Focused refinement of E3 shell)
Method: single particle / : Yip MCJ, Naydenova K, Randow F

EMDB-59437:
Murine RNF213 (Y434A) (Focused refinement of ATPase domain)
Method: single particle / : Yip MCJ, Naydenova K, Randow F

EMDB-59438:
Murine RNF213 (Y434A) (focused refinement of stalk)
Method: single particle / : Yip MCJ, Naydenova K, Randow F

EMDB-59439:
murine RNF213 (Y434A) (focused refinement of top of stalk)
Method: single particle / : Yip MCJ, Naydenova K, Randow F

EMDB-59440:
murine RNF213 (Y434A) (focused refinement of CBM20 domain)
Method: single particle / : Yip MCJ, Naydenova K, Randow F

EMDB-59441:
murine RNF213 (Y434A) (focused refinement of E3)
Method: single particle / : Yip MCJ, Naydenova K, Randow F

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more