[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 77 items for (author: naismith & jh)

EMDB-50042:
Wzc-K540M-2YE MgADP C1
Method: single particle / : Liu JW, Yang Y, Naismith JH

EMDB-50043:
Wzc-K540M-2YE MgADP C8
Method: single particle / : Liu JW, Yang Y, Naismith JH

EMDB-50044:
Wzc-K540M-3YE MgADP C1
Method: single particle / : Liu JW, Yang Y, Naismith JH

EMDB-50045:
Wzc-K540M-3YE MgADP C8
Method: single particle / : Liu JW, Yang Y, Naismith JH

EMDB-50046:
Wzc-K540M-3YE-N711Y MgADP C1
Method: single particle / : Liu JW, Yang Y, Naismith JH

EMDB-50047:
Wzc-K540M-3YE-N711Y MgADP C8
Method: single particle / : Liu JW, Yang Y, Naismith JH

EMDB-50675:
Escherichia coli 70S ribosome in situ structure
Method: subtomogram averaging / : Watson H, Berger C, Grange M

EMDB-50676:
E. coli 70S ribosome in situ structure for xenon damage layer determination: 5 - 10 nm
Method: subtomogram averaging / : Watson H, Berger C, Grange M

EMDB-50678:
E. coli 70S ribosome in situ structure for xenon damage layer determination: 10 - 15 nm
Method: subtomogram averaging / : Watson H, Berger C, Grange M

EMDB-50679:
E. coli 70S ribosome in situ structure for xenon damage layer determination: 15 - 20 nm
Method: subtomogram averaging / : Watson H, Berger C, Grange M

EMDB-50680:
E. coli 70S ribosome in situ structure for xenon damage layer determination: 20 - 25 nm
Method: subtomogram averaging / : Watson H, Berger C, Grange M

EMDB-50681:
E. coli 70S ribosome in situ structure for xenon damage layer determination: 25 - 30 nm
Method: subtomogram averaging / : Watson H, Berger C, Grange M

EMDB-50682:
E. coli 70S ribosome in situ structure for xenon damage layer determination: 30 - 35 nm
Method: subtomogram averaging / : Watson H, Berger C, Grange M

EMDB-50683:
E. coli 70S ribosome in situ structure for xenon damage layer determination: 35 - 40 nm
Method: subtomogram averaging / : Watson H, Berger C, Grange M

EMDB-50684:
E. coli 70S ribosome in situ structure for xenon damage layer determination: 40 - 45 nm
Method: subtomogram averaging / : Watson H, Berger C, Grange M

EMDB-50685:
E. coli 70S ribosome in situ structure for xenon damage layer determination: 45 - 50 nm
Method: subtomogram averaging / : Watson H, Berger C, Grange M

EMDB-50686:
E. coli 70S ribosome in situ structure for xenon damage layer determination: 50 - 55 nm
Method: subtomogram averaging / : Watson H, Berger C, Grange M

EMDB-50687:
E. coli 70S ribosome in situ structure for xenon damage layer determination: 55 - 60 nm
Method: subtomogram averaging / : Watson H, Berger C, Grange M

EMDB-50688:
E. coli 70S ribosome in situ structure for xenon damage layer determination: >10nm matched control for 5 - 10 nm
Method: subtomogram averaging / : Watson H, Berger C, Grange M

EMDB-50689:
E. coli 70S ribosome in situ structure for xenon damage layer determination: >15 nm matched control for 10 - 15 nm
Method: subtomogram averaging / : Watson H, Berger C, Grange M

EMDB-50690:
E. coli 70S ribosome in situ structure for xenon damage layer determination: >20 nm matched control for 15 - 20 nm
Method: subtomogram averaging / : Watson H, Berger C, Grange M

EMDB-50691:
E. coli 70S ribosome in situ structure for xenon damage layer determination: >25 nm matched control for 20 - 25 nm
Method: subtomogram averaging / : Watson H, Berger C, Grange M

EMDB-50692:
E. coli 70S ribosome in situ structure for xenon damage layer determination: >30 nm matched control for 25 - 30 nm
Method: subtomogram averaging / : Watson H, Berger C, Grange M

EMDB-50693:
E. coli 70S ribosome in situ structure for xenon damage layer determination: >35 nm matched control for 30 - 35 nm
Method: subtomogram averaging / : Watson H, Berger C, Grange M

EMDB-50694:
E. coli 70S ribosome in situ structure for xenon damage layer determination: >40 nm matched control for 35 - 40 nm
Method: subtomogram averaging / : Watson H, Berger C, Grange M

EMDB-50695:
E. coli 70S ribosome in situ structure for xenon damage layer determination: >45 nm matched control for 40 - 45 nm
Method: subtomogram averaging / : Watson H, Berger C, Grange M

EMDB-50696:
E. coli 70S ribosome in situ structure for xenon damage layer determination: >50 nm matched control for 45 - 50 nm
Method: subtomogram averaging / : Watson H, Berger C, Grange M

EMDB-50697:
E. coli 70S ribosome in situ structure for xenon damage layer determination: >55 nm matched control for 50 - 55 nm
Method: subtomogram averaging / : Watson H, Berger C, Grange M

EMDB-50698:
E. coli 70S ribosome in situ structure for xenon damage layer determination: >60 nm matched control for 55 - 60 nm
Method: subtomogram averaging / : Watson H, Berger C, Grange M

EMDB-50699:
E. coli 70S ribosome in situ structure for lamellae backside damage analysis: 0 - 1 micron from lamellae backside
Method: subtomogram averaging / : Watson H, Berger C, Grange M

EMDB-50700:
E. coli 70S ribosome in situ structure for lamellae backside damage analysis: 1 - 2 microns from lamellae backside
Method: subtomogram averaging / : Watson H, Berger C, Grange M

EMDB-50701:
E. coli 70S ribosome in situ structure for lamellae backside damage analysis: 2 - 3 microns from lamellae backside
Method: subtomogram averaging / : Watson H, Berger C, Grange M

EMDB-50702:
E. coli 70S ribosome in situ structure for lamellae backside damage analysis: 3 - 4 microns from lamellae backside
Method: subtomogram averaging / : Watson H, Berger C, Grange M

EMDB-50703:
E. coli 70S ribosome in situ structure for lamellae backside damage analysis: 4 - 5 microns from lamellae backside
Method: subtomogram averaging / : Watson H, Berger C, Grange M

EMDB-50704:
E. coli 70S ribosome in situ structure for xenon damage layer determination: 10,000 particles (no depth constraint)
Method: subtomogram averaging / : Watson H, Berger C, Grange M

EMDB-50705:
E. coli 70S ribosome in situ structure for xenon damage layer determination: 10,000 particles (>45 nm)
Method: subtomogram averaging / : Watson H, Berger C, Grange M

EMDB-50706:
E. coli 70S ribosome in situ structure for xenon damage layer determination: 10,000 particles (<=45 nm)
Method: subtomogram averaging / : Watson H, Berger C, Grange M

EMDB-52177:
E. coli 70S ribosome in situ structure for xenon damage layer determination: 10,000 particles (no depth constraint)
Method: subtomogram averaging / : Watson H, Berger C, Grange M

EMDB-52178:
E. coli 70S ribosome in situ structure for xenon damage layer determination: 10,000 particles (<30 nm)
Method: subtomogram averaging / : Watson H, Berger C, Grange M

EMDB-52179:
E. coli 70S ribosome in situ structure for xenon damage layer determination: 10,000 particles (>30 nm)
Method: subtomogram averaging / : Watson H, Berger C, Grange M

EMDB-17295:
Stabilised BA.1 SARS-CoV-2 spike with H6 nanobodies in '3 up' RBD conformation
Method: single particle / : Weckener M, Naismith JH, Owens RJ

EMDB-17296:
Stabilised BA.1 SARS-CoV-2 spike with H6 nanobodies in '2 up 1 down' RBD conformation
Method: single particle / : Weckener M, Naismith JH, Owens RJ

EMDB-16364:
The lipid linked oligosaccharide polymerase Wzy and its regulating co-polymerase Wzz form a complex in vivo and in vitro
Method: single particle / : Weckener M, Woodward LS, Clarke BR, Liu H, Ward PN, Le Bas A, Bhella D, Whitfield C, Naismith JH

EMDB-15636:
Human 80S ribosome structure from pFIB-lamellae
Method: subtomogram averaging / : Berger C, Grange M

EMDB-16185:
80S human ribosome structure from PFIB lamellae of HeLa cells for assessing the extend and depth of the damage layer: 15 to 30 nm
Method: subtomogram averaging / : Berger C, Grange M

EMDB-16186:
80S human ribosome structure from PFIB lamellae of HeLa cells for assessing the extend and depth of the damage layer: above 30 nm matched control (for 15 to 30 nm)
Method: subtomogram averaging / : Berger C, Grange M

EMDB-16192:
80S human ribosome structure from PFIB lamellae of HeLa cells for assessing the extend and depth of the damage layer:30 to 45 nm
Method: subtomogram averaging / : Berger C, Grange M

EMDB-16193:
80S human ribosome structure from PFIB lamellae of HeLa cells for assessing the extend and depth of the damage layer: above 45 nm matched control (for 30 to 45 nm)
Method: subtomogram averaging / : Berger C, Grange M

EMDB-16194:
80S human ribosome structure from PFIB lamellae of HeLa cells for assessing the extend and depth of the damage layer:45 to 60 nm
Method: subtomogram averaging / : Berger C, Grange M

EMDB-16195:
80S human ribosome structure from PFIB lamellae of HeLa cells for assessing the extend and depth of the damage layer: above 60 nm matched control (for 45 to 60 nm)
Method: subtomogram averaging / : Berger C, Grange M

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more