3DEM data search - EMN search

Keywords
Database	EMDB & PDB EMDB PDB / having EMPIAR entry Q: What are the data sources of EM Navigator?
Data entries	All Latest only Updated only / weeks ago Q: When the data are updated?
Author
Processing method	electron tomography subtomogram averaging single particle reconstruction helical reconstruction electron crystallography

Display mode	list images only table
Sort by
Num. of entries / page
Entry	Title Data Release Date Last Update Submission Date Authors Processing Site EMPIAR-ID
Article	Journal Name PubMed ID Country
Sample	Component Species Aggregation State Molecular Weight (MDa)
Experiment	Cryogen Name Instrument for Vitrification Specimen Holder Specimen Temperature Microscope Accelerating Voltage Electron Source Detector
Processing	Method Resolution Resolution Method CTF correction 3D reconstruction Algorithm Software fo 3D reconstruction Model PDB ID Software for modeling

Max number of data	0 for all data
File format	CSV format (Comma-Separated Values, for Excel, etc.) TSV format (Tab Separated Values, for Excel, etc.) JSON format

Showing all 22 items for (author: matos & j)

EMDB-50229:
Cryo-tomogram of FIB-milled vegetatively growing yeast cell with mitochondria

EMDB-50230:
Cryo-tomogram of FIB-milled pre-meiotic yeast cell with mitochondria

EMDB-50231:
Cryo-tomogram of FIB-milled meiotic yeast cell containing mitochondria with filaments

EMDB-50232:
Cryo-tomogram of FIB-milled yeast spore with mitochondria

EMDB-50233:
Cryo-tomogram of FIB-milled meiotic yeast cell containing mitochondria with filament arrays

EMDB-50234:
Cryo-tomogram of purified meiotic yeast mitochondria with Ald4 filaments

EMDB-19548:
cryoEM structure of Acs1 filament determined by FilamentID

EMDB-19549:
cryoEM structure of the central Ald4 filament determined by FilamentID

EMDB-19550:
cryoEM structure of purified Acs1 filament from meiotic yeast cells

EMDB-19551:
cryo sub-tomogram average of Acs1 filament from spread meiotic yeast spheroplasts

EMDB-19552:
cryo sub-tomogram average of Ald4 filaments from purified meiotic yeast mitochondria

EMDB-19553:
cryo-tomogram of FIB-milled meiotic yeast cell containing filaments in mitochondria

EMDB-19554:
cryo-tomogram of FIB-milled meiotic yeast cell containing filaments in the nucleus

EMDB-19555:
cryo-tomogram of FIB-milled meiotic yeast cell containing filaments in the cytoplasm

EMDB-19556:
cryo-tomogram of purified meiotic yeast mitochondrion containing Ald4 filaments

EMDB-19557:
cryo-tomogram of spread meiotic yeast spheroplast containing Acs1 filaments

EMDB-19558:
cryo-tomogram of spread starved yeast spheroplast containing filaments

PDB-8rwj:
cryoEM structure of Acs1 filament determined by FilamentID

PDB-8rwk:
cryoEM structure of the central Ald4 filament determined by FilamentID

EMDB-10707:
Anabaena sp. PCC 7120 Septal Junction Average from Manually Milled Lamellae

EMDB-10708:
Anabaena sp. PCC 7120 Septal Junction Average from Lamellae generated by Automated Milling

EMDB-10710:
Yeast Tomogram Collected on Lamella Generated by Fully Automated FIB Milling

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

Version 3 of the EMDB header file is now the official format.
The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

+
Mar 5, 2020. Novel coronavirus structure data

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

Page	Data	Format
EMN Search	search result	CSV, TSV, or JSON
EMN statistics	data table	CSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

-
Movie

-
Structure viewers

+
Viewer log

-
This page

-
This web site

-
Options

-
Search query

-
Search result

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

+
Aug 12, 2020. Covid-19 info

+
Mar 5, 2020. Novel coronavirus structure data

+
Jul 5, 2019. Downlodablable text data

-
EMN Search

-Movie

-Structure viewers

+Viewer log

-This page

-This web site

-Options

-Search query

-Search result

+About EMN search

-News

-Feb 9, 2022. New format data for meta-information of EMDB entries

-Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

+Aug 12, 2020. Covid-19 info

+Mar 5, 2020. Novel coronavirus structure data

+Jul 5, 2019. Downlodablable text data

-EMN Search

-
Movie

-
Structure viewers

+
Viewer log

-
This page

-
This web site

-
Options

-
Search query

-
Search result

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

+
Aug 12, 2020. Covid-19 info

+
Mar 5, 2020. Novel coronavirus structure data

+
Jul 5, 2019. Downlodablable text data

-
EMN Search