[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 36 items for (author: marquez & ja)

EMDB-53300:
Cryo-EM structure of the WIM8E5 Fab - HLA-A*11:01 human alloantibody-HLA complex
Method: single particle / : Zampieri V, Priddey A, Humm AS, Pellegrini E, Heidt S, Kosmoliaptsis V, Marquez JA

EMDB-53299:
Cryo-EM structure of the SN230G6 Fab - HLA-A*02:01 human alloantibody-HLA complex
Method: single particle / : Zampieri V, Priddey A, Schneider S, Heidt S, Kosmoliaptsis V, Marquez JA

EMDB-71132:
Consensus refinement of beta-barrel assembly machine from Escherichia coli in an late state of LptD assembly
Method: single particle / : Thomson BD, Marquez MD, Kahne D

EMDB-71133:
Focused refinement of beta-barrel assembly machine from Escherichia coli in an late state of LptD assembly
Method: single particle / : Thomson BD, Marquez MD, Kahne D

EMDB-71134:
beta-barrel assembly machine from Escherichia coli in an late state of LptD assembly
Method: single particle / : Thomson BD, Marquez MD, Kahne D

PDB-9p1u:
beta-barrel assembly machine from Escherichia coli in an late state of LptD assembly
Method: single particle / : Thomson BD, Marquez MD, Kahne D

EMDB-48251:
Consensus refinement of the barrel region of beta-barrel assembly machine from Escherichia coli in an late state of substrate assembly
Method: single particle / : Thomson BD, Kahne D

EMDB-48252:
Focused refinement of the barrel region of beta-barrel assembly machine from Escherichia coli in an late state of substrate assembly
Method: single particle / : Thomson BD, Kahne D

EMDB-48253:
beta-barrel assembly machine from Escherichia coli in an early state of substrate assembly
Method: single particle / : Thomson BD, Kahne D

EMDB-48254:
beta-barrel assembly machine from Escherichia coli in a middle state of substrate assembly
Method: single particle / : Thomson BD, Kahne D

EMDB-48255:
beta-barrel assembly machine from Escherichia coli in a late state of substrate assembly
Method: single particle / : Thomson BD, Kahne D

PDB-9mge:
beta-barrel assembly machine from Escherichia coli in an early state of substrate assembly
Method: single particle / : Thomson BD, Kahne D

PDB-9mgf:
beta-barrel assembly machine from Escherichia coli in a middle state of substrate assembly
Method: single particle / : Thomson BD, Kahne D

PDB-9mgg:
beta-barrel assembly machine from Escherichia coli in a late state of substrate assembly
Method: single particle / : Thomson BD, Kahne D

EMDB-51384:
Structure of Sticholisin II in large unilamellar vesicles.
Method: single particle / : Santiago C, Martin-Benito J, Arranz R, Masiulis S

EMDB-51432:
Structure of fragacetoxin C in lipid nanodiscs
Method: single particle / : Martin Benito J, Santiago C

EMDB-51426:
Structure of the octameric pore of Fragaceotxin C (FraC or DELTA-actitoxin-Afr1a) in large unilamellar vesicles.
Method: single particle / : Martin Benito J, Santiago C, Carlero D, Arranz R

EMDB-51431:
Structure of 6mer pore intermediate of Sticholysin II (StnII) toxin in lipid nanodiscs
Method: single particle / : Martin Benito J, Santiago C, Carlero D, Arranz R

EMDB-51420:
Structure of 5mer pore intermediate of Sticholysin II (StnII) toxin in lipid nanodiscs
Method: single particle / : Martin Benito J, Santiago C, Carlero D

EMDB-35143:
Cryo-EM structure of the zeaxanthin-bound kin4B8
Method: single particle / : Murakoshi S, Chazan A, Shihoya W, Beja O, Nureki O

EMDB-28551:
RMC-5552 in complex with mTORC1 and FKBP12
Method: single particle / : Tomlinson ACA, Yano JK

PDB-8era:
RMC-5552 in complex with mTORC1 and FKBP12
Method: single particle / : Tomlinson ACA, Yano JK

EMDB-25759:
Cryo-EM structure of the SARS-CoV-2 Omicron spike protein
Method: single particle / : Zhu X, Mannar D

EMDB-25760:
Cryo-EM structure of SARS-CoV-2 Omicron spike protein in complex with human ACE2
Method: single particle / : Zhu X, Mannar D

EMDB-25761:
Cryo-EM structure of SARS-CoV-2 Omicron spike protein in complex with human ACE2 (focused refinement of RBD and ACE2)
Method: single particle / : Zhu X, Mannar D

PDB-7t9j:
Cryo-EM structure of the SARS-CoV-2 Omicron spike protein
Method: single particle / : Zhu X, Mannar D, Saville JW, Srivastava SS, Berezuk AM, Tuttle KS, Subramaniam S

PDB-7t9k:
Cryo-EM structure of SARS-CoV-2 Omicron spike protein in complex with human ACE2
Method: single particle / : Zhu X, Mannar D, Saville JW, Srivastava SS, Berezuk AM, Tuttle KS, Subramaniam S

PDB-7t9l:
Cryo-EM structure of SARS-CoV-2 Omicron spike protein in complex with human ACE2 (focused refinement of RBD and ACE2)
Method: single particle / : Zhu X, Mannar D, Saville JW, Srivastava SS, Berezuk AM, Tuttle KS, Subramaniam S

EMDB-24610:
Structure of RNA-dependent RNA polymerase 2 (RDR2) from Arabidopsis thaliana
Method: single particle / : Fukudome A, Pikaard CS

EMDB-24635:
Arabidopsis RNA-dependent RNA polymerase 2
Method: single particle / : Fukudome A, Pikaard CS

PDB-7roz:
Structure of RNA-dependent RNA polymerase 2 (RDR2) from Arabidopsis thaliana
Method: single particle / : Fukudome A, Pikaard CS, Takagi Y

PDB-7rqs:
Arabidopsis RNA-dependent RNA polymerase 2
Method: single particle / : Fukudome A, Pikaard CS, Takagi Y

PDB-4v7e:
Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
Method: single particle / : Barrio-Garcia C, Armache JP, Jarasch A, Anger AM, Villa E, Becker T, Bhushan S, Jossinet F, Habeck M, Dindar G, Franckenberg S, Marquez V, Mielke T, Thomm M, Berninghausen O, Beatrix B, Soeding J, Westhof E, Wilson DN, Beckmann R

PDB-4v6i:
Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
Method: single particle / : Armache JP, Jarasch A, Anger AM, Villa E, Becker T, Bhushan S, Jossinet F, Habeck M, Dindar G, Franckenberg S, Marquez V, Mielke T, Thomm M, Berninghausen O, Beatrix B, Soeding J, Westhof E, Wilson DN, Beckmann R

EMDB-1780:
High-resolution Cryo-EM structure of a programmed wheat germ ribosome
Method: single particle / : Armache JP, Jarasch A, Anger AM, Villa E, Becker T, Bhushan S, Jossinet F, Habeck M, Dindar G, Franckenberg S, Marquez V, Mielke T, Thomm M, Berninghausen O, Beatrix B, Soeding J, Westhof E, Wilson DN, Beckmann R

PDB-3izd:
Model of the large subunit RNA expansion segment ES27L-out based on a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome. 3IZD is a small part (an expansion segment) which is in an alternative conformation to what is in already 3IZF.
Method: single particle / : Armache JP, Jarasch A, Anger AM, Villa E, Becker T, Bhushan S, Jossinet F, Habeck M, Dindar G, Franckenberg S, Marquez V, Mielke T, Thomm M, Berninghausen O, Beatrix B, Soeding J, Westhof E, Wilson DN, Beckmann R

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more