[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 6,535 items for (author: mann & d)

EMDB-56614:
Cryo-EM structure of UBA6 in complex with FAT10 in the pre-adenylation state.
Method: single particle / : Ellison CJ, Dalietou EV, Riechmann C, Elliott PR

EMDB-56615:
Cryo-EM structure of UBA6 in complex with FAT10 in the post-thiolation state.
Method: single particle / : Ellison CJ, Dalietou EV, Riechmann C, Elliott PR

EMDB-56644:
Cryo-EM structure of UBA6-UbDha-UBE2Z trapped ternary complex (singly loaded)
Method: single particle / : Ellison CJ, Riechmann C, Elliott PR

EMDB-56645:
Cryo-EM structure of UBA6-UbDha-UBE2Z trapped ternary complex (doubly loaded)
Method: single particle / : Ellison CJ, Riechmann C, Elliott PR

EMDB-56646:
Cryo-EM structure of UBA6-FAT10Dha-UBE2Z trapped ternary complex
Method: single particle / : Ellison CJ, Riechmann C, Elliott PR

PDB-28mj:
Cryo-EM structure of UBA6 in complex with FAT10 in the pre-adenylation state.
Method: single particle / : Ellison CJ, Dalietou EV, Riechmann C, Elliott PR

PDB-28mk:
Cryo-EM structure of UBA6 in complex with FAT10 in the post-thiolation state.
Method: single particle / : Ellison CJ, Dalietou EV, Riechmann C, Elliott PR

PDB-28mo:
Cryo-EM structure of UBA6-UbDha-UBE2Z trapped ternary complex (singly loaded)
Method: single particle / : Ellison CJ, Riechmann C, Elliott PR

PDB-28mp:
Cryo-EM structure of UBA6-UbDha-UBE2Z trapped ternary complex (doubly loaded)
Method: single particle / : Ellison CJ, Riechmann C, Elliott PR

PDB-28mq:
Cryo-EM structure of UBA6-FAT10Dha-UBE2Z trapped ternary complex
Method: single particle / : Ellison CJ, Riechmann C, Elliott PR

EMDB-54986:
Closed conformation dome complex including the Sec-translocon (SecYEG-SecA-SecDF) in untreated Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Jensen RK, Xue L, Mahamid J

EMDB-54988:
Open conformation dome complex including the Sec-translocon (SecYEG-SecA-SecDF) in untreated Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Jensen RK, Xue L, Mahamid J

EMDB-55029:
Ribosome-dome complex including the Sec-translocon (SecYEG-SecA-SecDF) from antibiotics treated Mycoplasma pneumoniae cells (Combined)
Method: subtomogram averaging / : Xue L, Jensen RK, Mahamid J

EMDB-72790:
Neurotensin Receptor 1 (NTSR1) bound to Octotensin in complex with Gi3 in the Non-Canonical Orientation
Method: single particle / : Robertson MJ

EMDB-72791:
Neurotensin Receptor 1 (NTSR1) bound to Octotensin in complex with Gi3 in the Canonical Orientation
Method: single particle / : Robertson MJ

EMDB-74629:
Shigella flexneri type III secretion system (T3SS) protein IpaD bound to hemolysis blocking Fab D02-F2 and hemolysis enhancing Fab D02-E4
Method: single particle / : Gilman MSA, Kruse AC, Schmidt HR

EMDB-74630:
Shigella flexneri type III secretion system (T3SS) protein IpaD bound to hemolysis blocking antibody fragment D13r-34
Method: single particle / : Gilman MSA, Kruse AC, Schmidt HR

PDB-9zrs:
Shigella flexneri type III secretion system (T3SS) protein IpaD bound to hemolysis blocking Fab D02-F2 and hemolysis enhancing Fab D02-E4
Method: single particle / : Gilman MSA, Kruse AC, Schmidt HR

PDB-9zrt:
Shigella flexneri type III secretion system (T3SS) protein IpaD bound to hemolysis blocking antibody fragment D13r-34
Method: single particle / : Gilman MSA, Kruse AC, Schmidt HR

EMDB-54989:
Open conformation dome complex including the Sec-translocon (SecYEG-SecA-SecDF) with inward-facing SecDF from untreated Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Jensen RK, Xue L, Mahamid J

EMDB-54990:
Open conformation dome complex including the Sec-translocon (SecYEG-SecA-SecDF) with inward-facing SecDF and substrate from untreated Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Jensen RK, Xue L, Mahamid J

EMDB-54991:
Closed conformation dome complex including the Sec-translocon in the minor SecA conformation (SecYEG-SecA-SecDF) in untreated Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Jensen RK, Xue L, Mahamid J

EMDB-54992:
Open conformation dome complex including the Sec-translocon (SecYEG-SecDF) from untreated Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Jensen RK, Xue L, Mahamid J

EMDB-54993:
Open conformation dome complex including the Sec-translocon (SecYEG-SecA-SecDF) from untreated Mycoplasma pneumoniae cell
Method: subtomogram averaging / : Jensen RK, Xue L, Mahamid J

EMDB-55013:
Multibody refinement of pooled Ribosome-Sec translocon-Dome supercomplexes from four antibiotic treated Mycoplasma pneumoniae datasets, body 3/3
Method: subtomogram averaging / : Xue L, Jensen R, Mahamid J

EMDB-55014:
Multibody refinement of pooled Ribosome-Sec translocon-Dome supercomplexes from four antibiotic treated Mycoplasma pneumoniae datasets, body 2/3
Method: subtomogram averaging / : Xue L, Jensen R, Mahamid J

EMDB-55016:
Multibody refinement of pooled Ribosome-Sec translocon-Dome supercomplexes from four antibiotic treated Mycoplasma pneumoniae datasets, body 1/3
Method: subtomogram averaging / : Xue L, Jensen R, Mahamid J

EMDB-55018:
Ribosome-Sec translocon-Dome supercomplex in chloramphenicol treated Mycoplasma pneumoniae cells imaged on K3 camera
Method: subtomogram averaging / : Xue L, Jensen RK, Mahamid J

EMDB-55020:
Ribosome-Sec translocon-Dome supercomplex in spectinomycin treated Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Xue L, Jensen R, Mahamid J

EMDB-55021:
Ribosome-Sec translocon-Dome supercomplex in puseudoridimycin treated Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Xue L, Jensen RK, Mahamid J

EMDB-55022:
Ribosome-Sec translocon-Dome supercomplex in chloramphenicol treated Mycoplasma pneumoniae cells by K2 camera
Method: subtomogram averaging / : Xue L, Jensen RK, Mahamid J

EMDB-55023:
Ribosome-Sec translocon-Dome supercomplex in native untreated Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Xue L, Jensen RK, Mahamid J

EMDB-55589:
Structure of mouse full-length LRRC8D
Method: single particle / : Lehmann EF, Deneka D, Stierli F, Rutz S, Dutzler R

EMDB-55590:
Structure of heteromeric mouse LRRC8A/D Volume-Regulated Anion Channel in complex with synthetic nanobody Sb1, Conformation 1
Method: single particle / : Lehmann EF, Deneka D, Stierli F, Rutz S, Dutzler R

EMDB-55591:
Structure of heteromeric mouse LRRC8A/D Volume-Regulated Anion Channel in complex with synthetic nanobody Sb1, Conformation 2
Method: single particle / : Lehmann EF, Deneka D, Stierli F, Rutz S, Dutzler R

EMDB-55592:
Structure of heteromeric mouse LRRC8A/D Volume-Regulated Anion Channel in complex with synthetic nanobody Sb4
Method: single particle / : Lehmann EF, Deneka D, Stierli F, Rutz S, Dutzler R

PDB-9t5m:
Structure of mouse full-length LRRC8D
Method: single particle / : Lehmann EF, Deneka D, Stierli F, Rutz S, Dutzler R

PDB-9t5n:
Structure of heteromeric mouse LRRC8A/D Volume-Regulated Anion Channel in complex with synthetic nanobody Sb1, Conformation 1
Method: single particle / : Lehmann EF, Deneka D, Stierli F, Rutz S, Dutzler R

PDB-9t5o:
Structure of heteromeric mouse LRRC8A/D Volume-Regulated Anion Channel in complex with synthetic nanobody Sb1, Conformation 2
Method: single particle / : Lehmann EF, Deneka D, Stierli F, Rutz S, Dutzler R

PDB-9t5p:
Structure of heteromeric mouse LRRC8A/D Volume-Regulated Anion Channel in complex with synthetic nanobody Sb4
Method: single particle / : Lehmann EF, Deneka D, Stierli F, Rutz S, Dutzler R

EMDB-54817:
Dimeric form of the Streptococcus pyogenes nuclease A (SpnA)
Method: single particle / : Bennig IA, Strobaek J, Marmede R, Neumann A, Friaes A, Ramirez M, Hall M, Collin M, Malmstrom L, Ekstrom S, Frick I, Bjorck L, Happonen LJ

PDB-9sf9:
Dimeric form of the Streptococcus pyogenes nuclease A (SpnA)
Method: single particle / : Bennig IA, Strobaek J, Marmede R, Sellerberg A, Neumann A, Friaes A, Ramirez M, Hall M, Collin M, Malmstrom L, Ekstrom S, Frick I, Bjorck L, Happonen LJ

EMDB-54808:
mechanosensitive channel MscS from Francisella tularensis in nanodiscs
Method: single particle / : Rasmussen A, Hemmelmann N, Hove TT, Flegler VJ, Rasmussen T, Bottcher B

EMDB-54810:
mechanosensitive channel MscS from Francisella tularensis, mutant F108A
Method: single particle / : Rasmussen A, Hemmelmann N, Hove TT, Flegler VJ, Rasmussen T, Bottcher B

EMDB-54867:
Structure of Pex8 in complex with peroxisomal receptor Pex5
Method: single particle / : Ekal L, Mullapudi E, Chojnowski G, Wilmanns M

PDB-9sfw:
Structure of Pex8 in complex with peroxisomal receptor Pex5
Method: single particle / : Ekal L, Mullapudi E, Chojnowski G, Wilmanns M

EMDB-54816:
Monomeric form of the Streptococcus pyogenes nuclease A (SpnA)
Method: single particle / : Bennig IA, Strobaek J, Marmede R, Sellerberg A, Neumann A, Friaes A, Ramirez M, Hall M, Collin M, Malmstrom L, Ekstrom S, Frick I, Bjorck L, Happonen LJ

PDB-9sf8:
Monomeric form of the Streptococcus pyogenes nuclease A (SpnA)
Method: single particle / : Bennig IA, Strobaek J, Marmede R, Sellerberg A, Neumann A, Friaes A, Ramirez M, Hall M, Collin M, Malmstrom L, Ekstrom S, Frick I, Bjorck L, Happonen LJ

EMDB-56657:
CTX/MthK complex
Method: single particle / : Qoraj D, Sprink T, Lange A

PDB-28no:
CTX/MthK complex
Method: single particle / : Qoraj D, Sprink T, Lange A

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more