[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 12,616 items for (author: lu & b)

EMDB-63757:
SARS-CoV-2 spike-Crp5
Method: single particle / : Yang QX, Yang YL

EMDB-65041:
SARS-CoV-2 spike di-trimer of RBD and NTD
Method: single particle / : Yang QX, Yang YL

PDB-9mao:
SARS-CoV-2 spike-Crp5
Method: single particle / : Yang QX, Yang YL

PDB-9vfx:
SARS-CoV-2 spike di-trimer of RBD and NTD
Method: single particle / : Yang QX, Yang YL

EMDB-76033:
Low resolution cryo-EM structure of Munc18 bound to Syntaxin in nanodiscs
Method: single particle / : Kreutzberger MA, Tomaka W, Bao H, Kiessling V, Tamm LK

EMDB-76034:
Low resolution cryo-EM structure of Munc18 bound to Syntaxin and SNAP25 in nanodiscs
Method: single particle / : Kreutzberger MA, Tomaka W, Bao H, Kiessling V, Tamm LK

EMDB-76039:
Cryo-EM structure of Munc18 bound to Syntaxin and SNAP25 in proteoliposomes
Method: single particle / : Kreutzberger MA, Tomaka W, Bao H, Kiessling V, Tamm LK

EMDB-63507:
Cryo-EM structure of the chromatin remodeler Rad26 N-terminal deletion mutant bound to the nucleosome at SHL6
Method: single particle / : Fukushima Y, Takizawa Y, Kinoshita C, Ogasawara M, Haruhiko E, Sekine S, Kagawa W, Kurumizaka H

EMDB-54637:
Structure of human mitochondrial COX1-translating ribosome nascent chain complex with tRNAs in intermediate state (AP*)
Method: single particle / : Schoendorf T, Petrychenko V, Kotan I, Cruz-Zaragoza LD, Dahal D, Wang C, Gal T, Dennerlein S, Kramer G, Fischer N, Rehling P

EMDB-54638:
Structure of human mitochondrial COX1-translating ribosome nascent chain complex with tRNAs in initial hybrid state (H1)
Method: single particle / : Schoendorf T, Petrychenko V, Kotan I, Cruz-Zaragoza LD, Dahal D, Wang C, Gal T, Dennerlein S, Kramer G, Fischer N, Rehling P

EMDB-54639:
Structure of human mitochondrial COX1-translating ribosome nascent chain-OXA1L/MITRAC complex in open state (open COX1-mtRNC-OXA1L/MITRAC)
Method: single particle / : Schoendorf T, Petrychenko V, Kotan I, Cruz-Zaragoza LD, Dahal D, Wang C, Gal T, Dennerlein S, Kramer G, Fischer N, Rehling P

EMDB-54640:
Structure of human mitochondrial COX1-translating ribosome nascent chain-OXA1L/MITRAC complex in closed state (closed COX1-mtRNC-OXA1L/MITRAC)
Method: single particle / : Schoendorf T, Petrychenko V, Kotan I, Cruz-Zaragoza LD, Dahal D, Wang C, Gal T, Dennerlein S, Kramer G, Fischer N, Rehling P

EMDB-55836:
Structure of human mitochondrial COX1-translating ribosome nascent chain complex with peptidyl-tRNA (P)
Method: single particle / : Schoendorf T, Petrychenko V, Kotan I, Cruz-Zaragoza LD, Dahal D, Wang C, Gal T, Dennerlein S, Kramer G, Fischer N, Rehling P

EMDB-55837:
Structure of human mitochondrial COX1-translating ribosome nascent chain complex with tRNAs in classical pre-translocation state (AP)
Method: single particle / : Schoendorf T, Petrychenko V, Kotan I, Cruz-Zaragoza LD, Dahal D, Wang C, Gal T, Dennerlein S, Kramer G, Fischer N, Rehling P

EMDB-55838:
Structure of human mitochondrial COX1-translating ribosome nascent chain complex with tRNAs in late hybrid state (H2)
Method: single particle / : Schoendorf T, Petrychenko V, Kotan I, Cruz-Zaragoza LD, Dahal D, Wang C, Gal T, Dennerlein S, Kramer G, Fischer N, Rehling P

PDB-9s7b:
Structure of human mitochondrial COX1-translating ribosome nascent chain complex with tRNAs in intermediate state (AP*)
Method: single particle / : Schoendorf T, Petrychenko V, Kotan I, Cruz-Zaragoza LD, Dahal D, Wang C, Gal T, Dennerlein S, Kramer G, Fischer N, Rehling P

PDB-9s7c:
Structure of human mitochondrial COX1-translating ribosome nascent chain complex with tRNAs in initial hybrid state (H1)
Method: single particle / : Schoendorf T, Petrychenko V, Kotan I, Cruz-Zaragoza LD, Dahal D, Wang C, Gal T, Dennerlein S, Kramer G, Fischer N, Rehling P

PDB-9s7d:
Structure of human mitochondrial COX1-translating ribosome nascent chain-OXA1L/MITRAC complex in open state (open COX1-mtRNC-OXA1L/MITRAC)
Method: single particle / : Schoendorf T, Petrychenko V, Kotan I, Cruz-Zaragoza LD, Dahal D, Wang C, Gal T, Dennerlein S, Kramer G, Fischer N, Rehling P

PDB-9s7e:
Structure of human mitochondrial COX1-translating ribosome nascent chain-OXA1L/MITRAC complex in closed state (closed COX1-mtRNC-OXA1L/MITRAC)
Method: single particle / : Schoendorf T, Petrychenko V, Kotan I, Cruz-Zaragoza LD, Dahal D, Wang C, Gal T, Dennerlein S, Kramer G, Fischer N, Rehling P

EMDB-82115:
In Situ Subtomogram Average of the 80S Ribosome in Rat Hippocampal Synapses
Method: subtomogram averaging / : Xia YN, Yan YT, Si Z, Wu J, Gu ML, Tian CL, Lu ZH, Liu S, Huang WL, Tang PP, Rong CYL, Liu YT, Zhou ZH, Zhang XK, Wang PY, Lau PM, Bi GQ, Tao CL

EMDB-82118:
In Situ Subtomogram Average of the 60S Ribosomal Subunit in Rat Hippocampal Synapses
Method: subtomogram averaging / : Xia YN, Yan YT, Si Z, Wu J, Gu ML, Tian CL, Lu ZH, Liu S, Huang WL, Tang PP, Rong CYL, Liu YT, Zhou ZH, Zhang XK, Wang PY, Lau PM, Bi GQ, Tao CL

EMDB-82119:
In Situ Subtomogram Average of the Free 60S Ribosomal Subunit in the Soma of Rat Hippocampal Neuron
Method: subtomogram averaging / : Xia YN, Yan YT, Si Z, Wu J, Gu ML, Tian CL, Lu ZH, Liu S, Huang WL, Tang PP, Rong CYL, Liu YT, Zhou ZH, Zhang XK, Wang PY, Lau PM, Bi GQ, Tao CL

EMDB-82120:
In Situ Subtomogram Average of the 80S Ribosome in the Soma of Rat Hippocampal Neurons
Method: subtomogram averaging / : Xia YN, Yan YT, Si Z, Wu J, Gu ML, Tian CL, Lu ZH, Liu S, Huang WL, Tang PP, Rong CYL, Liu YT, Zhou ZH, Zhang XK, Wang PY, Lau PM, Bi GQ, Tao CL

EMDB-54501:
Focused map of the N-Terminal cytosolic shell part, Primed-state RyR1 with calcium in activating concentration in the native membrane
Method: single particle / : Mikirtumov V

EMDB-54502:
Focused map of the BSol cytosolic shell part, Primed-state RyR1 with calcium in activating concentration in the native membrane
Method: single particle / : Mikirtumov V

EMDB-54503:
Focused map of the CSol activation core part, Primed-state RyR1 with calcium in activating concentration in the native membrane
Method: single particle / : Mikirtumov V

EMDB-54504:
Focused map of the TMD/TaF/CTD part, Primed-state RyR1 with calcium in activating concentration in the native membrane
Method: single particle / : Mikirtumov V

EMDB-54505:
Consensus map, Primed-state RyR1 with calcium in activating concentration in the native membrane
Method: single particle / : Mikirtumov V

EMDB-54507:
RyR1-RyR1 dimer map, Primed-state RyR1 with calcium in activating concentration in the native membrane
Method: single particle / : Mikirtumov V

EMDB-54508:
Up"-class, Primed-state RyR1 with calcium in activating concentration in the native membrane
Method: single particle / : Mikirtumov V

EMDB-54509:
Primed-state RyR1 with calcium in activating concentration in the native membrane
Method: single particle / : Mikirtumov V

EMDB-54512:
Focused map of the N-Terminal cytosolic shell part, Primed-state RyR1 with activating ligand mixture (Calcium/ACP/Caffeine) in the native membrane
Method: single particle / : Mikirtumov V

EMDB-54513:
Focused map of the BSol cytosolic shell part, Primed-state RyR1 with activating ligand mixture (Calcium/ACP/Caffeine) in the native membrane
Method: single particle / : Mikirtumov V

EMDB-54514:
Focused map of the CSol activation core part, Primed-state RyR1 with activating ligand mixture (Calcium/ACP/Caffeine) in the native membrane
Method: single particle / : Mikirtumov V

EMDB-54515:
Focused map of the TMD/TaF/CTD part, Primed-state RyR1 with activating ligand mixture (Calcium/ACP/Caffeine) in the native membrane
Method: single particle / : Mikirtumov V

EMDB-54516:
Consensus map, Primed-state RyR1 with activating ligand mixture (Calcium/ACP/Caffeine) in the native membrane
Method: single particle / : Mikirtumov V

EMDB-54517:
RyR1-RyR1 Dimer map with activating ligand mixture (Calcium/ACP/Caffeine) in the native membrane
Method: single particle / : Mikirtumov V

EMDB-54552:
Down class, Primed-state RyR1 with activating ligand mixture (Calcium/ACP/Caffeine) in the native membrane
Method: single particle / : Mikirtumov V

EMDB-54553:
Primed-state RyR1 with activating ligand mixture (Calcium/ACP/Caffeine) in the native membrane
Method: single particle / : Mikirtumov V

EMDB-54554:
Focused map of the N-Terminal cytosolic shell part, Activated-state RyR1 with activating ligand mixture (Calcium/ACP/Caffeine) in the native membrane
Method: single particle / : Mikirtumov V

EMDB-54555:
Focused map of the BSol cytosolic shell part, Activated-state RyR1 with activating ligand mixture (Calcium/ACP/Caffeine) in the native membrane
Method: single particle / : Mikirtumov V

EMDB-54557:
Focused map of the CSol activation core part, Activated-state RyR1 with activating ligand mixture (Calcium/ACP/Caffeine) in the native membrane
Method: single particle / : Mikirtumov V

EMDB-54562:
Focused map of the TMD/TaF/CTD part, Activated-state RyR1 with activating ligand mixture (Calcium/ACP/Caffeine) in the native membrane
Method: single particle / : Mikirtumov V

EMDB-54568:
Consensus map, Activated-state RyR1 with activating ligand mixture (Calcium/ACP/Caffeine) in the native membrane
Method: single particle / : Mikirtumov V

EMDB-54569:
Down class, Activated-state RyR1 with activating ligand mixture (Calcium/ACP/Caffeine) in the native membrane
Method: single particle / : Mikirtumov V

EMDB-54570:
Activated-state RyR1 with activating ligand mixture (Calcium/ACP/Caffeine) in the native membrane
Method: single particle / : Mikirtumov V

EMDB-54571:
Focused map of the N-Terminal cytosolic shell part, Locked-state RyR1 with ryanodine in the native membrane
Method: single particle / : Mikirtumov V

EMDB-54572:
Focused map of the BSol cytosolic shell part, Locked-state RyR1 with ryanodine in the native membrane
Method: single particle / : Mikirtumov V

EMDB-54573:
Focused map of the CSol activation core part, Locked-state RyR1 with ryanodine in the native membrane
Method: single particle / : Mikirtumov V

EMDB-54574:
Focused map of the TMD/TaF/CTD part, Locked-state RyR1 with ryanodine in the native membrane
Method: single particle / : Mikirtumov V

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more