[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 39,465 items for (author: li & w)

EMDB-52409:
Outward-open structure of human glycine transporter 2 bound to allosteric inhibitor ORG25543
Method: single particle / : Cantwell Chater RP, Peiser-Oliver J, Pati TK, Quinn AS, Lotsaris I, Frangos ZJ, Anderson KE, Tischer AE, Williams-Noonan BJ, Aubrey KR, O Mara ML, Michaelides M, Mohammadi SA, Cioffi CL, Vandenberg RJ, Shahsavar A

EMDB-52410:
Outward-open structure of human glycine transporter 2 bound to allosteric inhibitor RPI-GLYT2-82
Method: single particle / : Cantwell Chater RP, Peiser-Oliver J, Pati TK, Quinn AS, Lotsaris I, Frangos ZJ, Anderson KE, Tischer AE, Williams-Noonan BJ, Aubrey KR, O Mara ML, Michaelides SA, Mohammadi SA, Cioffi CL, Vandenberg RJ, Shahsavar A

EMDB-52411:
Inward-open structure of human glycine transporter 2 in substrate-free state
Method: single particle / : Cantwell Chater RP, Peiser-Oliver J, Pati TK, Quinn AS, Lotsaris I, Frangos ZJ, Anderson KE, Tischer AE, Williams-Noonan BJ, Aubrey KR, O Mara ML, Michaelides M, Mohammadi SA, Cioffi CL, Vandenberg RJ, Shahsavar A

EMDB-53509:
Inward-occluded structure of human glycine transporter 2 bound to substrate glycine
Method: single particle / : Cantwell Chater RP, Peiser-Oliver J, Pati TK, Quinn AS, Lotsaris I, Frangos ZJ, Anderson KE, Tischer AE, Williams-Noonan BJ, Aubrey KR, O Mara ML, Michaelides M, Mohammadi SA, Cioffi CL, Vandenberg RJ, Shahsavar A

PDB-9hue:
Outward-open structure of human glycine transporter 2 bound to allosteric inhibitor ORG25543
Method: single particle / : Cantwell Chater RP, Peiser-Oliver J, Pati TK, Quinn AS, Lotsaris I, Frangos ZJ, Anderson KE, Tischer AE, Williams-Noonan BJ, Aubrey KR, O Mara ML, Michaelides M, Mohammadi SA, Cioffi CL, Vandenberg RJ, Shahsavar A

PDB-9huf:
Outward-open structure of human glycine transporter 2 bound to allosteric inhibitor RPI-GLYT2-82
Method: single particle / : Cantwell Chater RP, Peiser-Oliver J, Pati TK, Quinn AS, Lotsaris I, Frangos ZJ, Anderson KE, Tischer AE, Williams-Noonan BJ, Aubrey KR, O Mara ML, Michaelides M, Mohammadi SA, Cioffi CL, Vandenberg RJ, Shahsavar A

PDB-9hug:
Inward-open structure of human glycine transporter 2 in substrate-free state
Method: single particle / : Cantwell Chater RP, Peiser-Oliver J, Pati TK, Quinn AS, Lotsaris I, Frangos ZJ, Anderson KE, Tischer AE, Williams-Noonan BJ, Aubrey KR, O Mara ML, Michaelides M, Mohammadi SA, Cioffi CL, Vandenberg RJ, Shahsavar A

PDB-9r1h:
Inward-occluded structure of human glycine transporter 2 bound to substrate glycine
Method: single particle / : Cantwell Chater RP, Peiser-Oliver J, Pati TK, Quinn AS, Lotsaris I, Frangos ZJ, Anderson KE, Tischer AE, Williams-Noonan BJ, Aubrey KR, O Mara ML, Michaelides M, Mohammadi SA, Cioffi CL, Vandenberg RJ, Shahsavar A

EMDB-65918:
Structure of HCMV UL33 in complex with human Gs protein
Method: single particle / : Tsutsumi N, Suzuki S, Nishikawa K, Fujiyoshi Y

PDB-9wey:
Structure of HCMV UL33 in complex with human Gs protein
Method: single particle / : Tsutsumi N, Suzuki S, Nishikawa K, Fujiyoshi Y

EMDB-55526:
Staphylococcus aureus 70S initiation complex with a natural mRNA
Method: single particle / : Bahena Ceron R, Klaholz B, Marzi S

PDB-9t4r:
Staphylococcus aureus 70S initiation complex with a natural mRNA
Method: single particle / : Bahena Ceron R, Klaholz B, Marzi S

EMDB-71798:
Cryo-EM structure of the human inward-rectifier potassium 7.1 channel (Kir7.1) extended state
Method: single particle / : Niu Q, Vu S, Zhang R, Fu Z, Lishko PV

EMDB-71799:
Cryo-EM structure of the human inward-rectifier potassium 7.1 channel (Kir7.1) docked state
Method: single particle / : Niu Q, Vu S, Zhang R, Fu Z, Lishko PV

EMDB-71800:
Cryo-EM structure of the human inward-rectifier potassium 7.1 channel (Kir7.1) with enantiomer of 17-hydroxyprogesterone caproate
Method: single particle / : Niu Q, Vu S, Zhang R, Fu Z, Lishko PV

PDB-9pr5:
Cryo-EM structure of the human inward-rectifier potassium 7.1 channel (Kir7.1) extended state
Method: single particle / : Niu Q, Vu S, Zhang R, Fu Z, Lishko PV

PDB-9pr6:
Cryo-EM structure of the human inward-rectifier potassium 7.1 channel (Kir7.1) docked state
Method: single particle / : Niu Q, Vu S, Zhang R, Fu Z, Lishko PV

PDB-9pr7:
Cryo-EM structure of the human inward-rectifier potassium 7.1 channel (Kir7.1) with enantiomer of 17-hydroxyprogesterone caproate
Method: single particle / : Niu Q, Vu S, Zhang R, Fu Z, Lishko PV

EMDB-72942:
Flagella filament structure in H. pylori composed of flagellin FlaA
Method: single particle / : Kumar R, Yu H, Tachiyama S, Liu J

EMDB-72948:
Structure of flagellin FlaB filament in H. pylori
Method: single particle / : Kumar R, Yu H, Tachiyama S, Liu J

PDB-9ygu:
Flagella filament structure in H. pylori composed of flagellin FlaA
Method: single particle / : Kumar R, Yu H, Tachiyama S, Liu J

PDB-9yh1:
Structure of flagellin FlaB filament in H. pylori
Method: single particle / : Kumar R, Yu H, Tachiyama S, Liu J

EMDB-56420:
Structure of the MAP2K MEK1 without bound nucleotide in complex with its substrate MAPK ERK2
Method: single particle / : von Velsen J, Juyoux P, Bowler MW

PDB-9tyi:
Structure of the MAP2K MEK1 without bound nucleotide in complex with its substrate MAPK ERK2
Method: single particle / : von Velsen J, Juyoux P, Bowler MW

EMDB-75514:
Structure of amplified aSyn filament by using seed amplification assay (SAA) from MSA patient CSF.
Method: helical / : Banerjee V, Wang F, Baker ML, Serysheva II, Soto C

PDB-10xu:
Structure of amplified aSyn filament by using seed amplification assay (SAA) from MSA patient CSF.
Method: helical / : Banerjee V, Wang F, Baker ML, Serysheva II, Soto C

EMDB-55036:
Human TRPM4 ion channel in MSP2N2 lipid nanodisc in a calcium-bound state
Method: single particle / : Pugh CF, Feilen LP, Zivkovic D, Praestegaard KF, Sideris C, Borthwick NJ, de Lichtenberg C, Bolla JR, Autzen AAA, Autzen HE

PDB-9smk:
Human TRPM4 ion channel in MSP2N2 lipid nanodisc in a calcium-bound state
Method: single particle / : Pugh CF, Feilen LP, Zivkovic D, Praestegaard KF, Sideris C, Borthwick NJ, de Lichtenberg C, Bolla JR, Autzen AAA, Autzen HE

EMDB-53567:
An auto inhibitory loop in the MiDAC histone deacetylase complex
Method: single particle / : Fairall L, Schwabe JWR

PDB-9r4i:
An auto inhibitory loop in the MiDAC histone deacetylase complex
Method: single particle / : Fairall L, Schwabe JWR

EMDB-70260:
Human MPC1-2 Complex
Method: single particle / : Qi X, Sun Y, Wang Y

EMDB-62153:
Structural insights into photosystem II supercomplex of a a siphonous green algae Bryopsis corticulans from intertidal zone
Method: single particle / : Liu XY, Wang WD

PDB-9k7v:
Structural insights into photosystem II supercomplex of a a siphonous green algae Bryopsis corticulans from intertidal zone
Method: single particle / : Liu XY, Wang WD

EMDB-64004:
Sub-particle structure of the iterative acetyltransferase from Actinomycetes in complex with AcCoA and monoacetylated lasso peptides
Method: single particle / : Wu S, Xiong J, Lei D, Dong S

EMDB-72207:
Cryo EM structure of elk ACE2 in complex with SARS-CoV-2 spike trimer
Method: single particle / : Ye K, Tao YJ, Wan XF

EMDB-72208:
Cryo EM structure of elk ACE2 in complex with XBB 1.5 spike RBD
Method: single particle / : Ye K, Tao YJ, Wan XF

EMDB-49283:
A non-averaged 3D density map of an individual particle, with a 2D lattice formed by octahedral DNA origami and ferritin, was revealed by individual particle cryo-electron tomography (Arm #09 of Particle #001).
Method: electron tomography / : Liu J, Ren G

EMDB-49285:
A non-averaged 3D density map of an individual particle, with a 2D lattice formed by octahedral DNA origami and ferritin, was revealed by individual particle cryo-electron tomography (Arm #11 of Particle #001).
Method: electron tomography / : Liu J, Ren G

EMDB-49286:
A 3D density map of a 2D lattice formed by octahedral DNA origami with 100% loaded ferritin, was revealed by IMOD (Tomo #1).
Method: electron tomography / : Liu J, Ren G

EMDB-49287:
A 3D density map of a 2D lattice formed by octahedral DNA origami with 100% loaded ferritin, was revealed by IMOD (Tomo #2).
Method: electron tomography / : Liu J, Ren G

EMDB-49288:
A 3D density map of a 2D lattice formed by octahedral DNA origami with 70% loaded ferritin, was revealed by IMOD (Tomo #3).
Method: electron tomography / : Liu J, Ren G

EMDB-49289:
A 3D density map of a 2D lattice formed by octahedral DNA origami without ferritin, was revealed by IMOD (Tomo #4).
Method: electron tomography / : Liu J, Ren G

EMDB-61940:
Structure of PSI-LHCI-LHCII supercomplex from Bryopsis corticulans
Method: single particle / : Liu XY, Wang WD

PDB-9jzr:
Structure of PSI-LHCI-LHCII supercomplex from Bryopsis corticulans
Method: single particle / : Liu XY, Wang WD

EMDB-48638:
Structure of Human SLC33A1 in complex with oxidized glutathione
Method: single particle / : Gad M, Hite RK

EMDB-48699:
Consensus reconstitution of SLC33A1 in complex with a Fv clasp
Method: single particle / : Gad M, Hite RK

EMDB-54951:
Cryo-EM structure of Human Apoferritin at pH 3.5
Method: single particle / : Skalidis I, Semchonok DA, Tueting C, Hamdi F, Kastritis PL

EMDB-54952:
Cryo-EM structure of Human Apoferritin at pH 4
Method: single particle / : Skalidis I, Semchonok DA, Tueting C, Hamdi F, Kastritis PL

EMDB-54953:
Cryo-EM structure of Human Apoferritin at pH 5
Method: single particle / : Skalidis I, Semchonok DA, Tueting C, Hamdi F, Kastritis PL

EMDB-54954:
Cryo-EM structure of Human Apoferritin at pH 7
Method: single particle / : Skalidis I, Semchonok DA, Tueting C, Hamdi F, Kastritis PL

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more