[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 3,294 items for (author: li & dy)

EMDB-73664:
Structure of a canine circovirus virus-like particle
Method: single particle / : Hardy JM, Das S, Costin A, Raidal S, Forwood JK, Coulibaly FJ

EMDB-77283:
Canine circovirus virus-like particle with DNA
Method: single particle / : Hardy JM, Das S, Costin A, Raidal S, Forwood JK, Coulibaly FJ

PDB-9yz1:
Structure of a canine circovirus virus-like particle
Method: single particle / : Hardy JM, Das S, Costin A, Raidal S, Forwood JK, Coulibaly FJ

EMDB-58651:
Human wild-type LONP1 bound to PZL-26
Method: single particle / : Pardo-Hernandez C, Green J, Gustafsson CM

PDB-31sy:
Human wild-type LONP1 bound to PZL-26
Method: single particle / : Pardo-Hernandez C, Green J, Gustafsson CM

EMDB-54986:
Closed conformation dome complex including the Sec-translocon (SecYEG-SecA-SecDF) in untreated Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Jensen RK, Xue L, Mahamid J

EMDB-54988:
Open conformation dome complex including the Sec-translocon (SecYEG-SecA-SecDF) in untreated Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Jensen RK, Xue L, Mahamid J

EMDB-55029:
Ribosome-dome complex including the Sec-translocon (SecYEG-SecA-SecDF) from antibiotics treated Mycoplasma pneumoniae cells (Combined)
Method: subtomogram averaging / : Xue L, Jensen RK, Mahamid J

PDB-9slc:
Closed conformation dome complex including the Sec-translocon (SecYEG-SecA-SecDF) in untreated Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Jensen RK, Xue L, Mahamid J

PDB-9slf:
Open conformation dome complex including the Sec-translocon (SecYEG-SecA-SecDF) in untreated Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Jensen RK, Xue L, Mahamid J

PDB-9smd:
Ribosome-dome complex including the Sec-translocon (SecYEG-SecA-SecDF) from antibiotics treated Mycoplasma pneumoniae cells (Combined)
Method: subtomogram averaging / : Xue L, Jensen RK, Mahamid J

EMDB-55008:
Zuzalysin bi-pentamer
Method: single particle / : Rodriguez-Banqueri A, Gomis Ruth FX, Eckhard U, Potempa J, Glatt S, Koziej L, Madej M

EMDB-55035:
Zuzalysin zymogen dodecahedral complex E439A
Method: single particle / : Rodriguez-Banqueri A, Madej M, Eckhard U, Potempa J, Gomis Ruth FX, Koziej L

PDB-9sln:
Zuzalysin bi-pentamer cryo-em
Method: single particle / : Rodriguez-Banqueri A, Gomis Ruth FX, Eckhard U, Potempa J, Glatt S, Koziej L, Madej M

PDB-9smj:
Zuzalysin zymogen dodecahedral complex E439A
Method: single particle / : Rodriguez-Banqueri A, Madej M, Eckhard U, Potempa J

EMDB-55665:
E.coli ribosome reconstruction from frames 1-20, dose weighted
Method: single particle / : Wazny G, Glatt S, Indyka P, Jaciuk M, Rawski M, Biela AP

EMDB-55666:
E.coli ribosome reconstruction from frames 21-40, dose weighted
Method: single particle / : Wazny G, Glatt S, Indyka P, Jaciuk M, Rawski M, Biela AP

EMDB-55667:
E.coli ribosome reconstruction from frames 41-60, dose weighted
Method: single particle / : Wazny G, Glatt S, Indyka P, Jaciuk M, Rawski M, Biela AP

EMDB-55668:
E.coli ribosome reconstruction from frames 61-80, dose weighted
Method: single particle / : Wazny G, Glatt S, Indyka P, Jaciuk M, Rawski M, Biela AP

EMDB-55669:
E.coli ribosome reconstruction from frames 1-40, dose weighted
Method: single particle / : Wazny G, Glatt S, Indyka P, Jaciuk M, Rawski M, Biela AP

EMDB-55670:
E.coli ribosome reconstruction from frames 1-80, dose weighted
Method: single particle / : Wazny G, Glatt S, Indyka P, Jaciuk M, Rawski M, Biela AP

EMDB-55671:
E.coli ribosome reconstruction from frames 1-20, not dose weighted
Method: single particle / : Wazny G, Glatt S, Indyka P, Jaciuk M, Rawski M, Biela AP

EMDB-55672:
E.coli ribosome reconstruction from frames 1-40, not dose weighted
Method: single particle / : Wazny G, Glatt S, Indyka P, Jaciuk M, Rawski M, Biela AP

EMDB-55673:
E.coli ribosome reconstruction from frames 1-80, not dose weighted
Method: single particle / : Wazny G, Glatt S, Indyka P, Jaciuk M, Rawski M, Biela AP

EMDB-55674:
human type ribosome reconstruction from frames 1-20
Method: single particle / : Wazny G, Glatt S, Indyka P, Jaciuk M, Rawski M, Biela AP

EMDB-55675:
human type ribosome reconstruction from frames 21-40
Method: single particle / : Wazny G, Glatt S, Indyka P, Jaciuk M, Rawski M, Biela AP

EMDB-55676:
human type ribosome reconstruction from frames 41-60
Method: single particle / : Wazny G, Glatt S, Indyka P, Jaciuk M, Rawski M, Biela AP

EMDB-55677:
human type ribosome reconstruction from frames 61-80
Method: single particle / : Wazny G, Glatt S, Indyka P, Jaciuk M, Rawski M, Biela AP

EMDB-55678:
human type ribosome reconstruction from frames 1-40
Method: single particle / : Wazny G, Glatt S, Indyka P, Jaciuk M, Rawski M, Biela AP

EMDB-55679:
human type ribosome reconstruction from frames 1-80
Method: single particle / : Wazny G, Glatt S, Indyka P, Jaciuk M, Rawski M, Biela AP

EMDB-55680:
human type ribosome reconstruction from frames 1-20, not dose weighted
Method: single particle / : Wazny G, Glatt S, Indyka P, Jaciuk M, Rawski M, Biela AP

EMDB-55681:
human type ribosome reconstruction from frames 1-40, not dose weighted
Method: single particle / : Wazny G, Glatt S, Indyka P, Jaciuk M, Rawski M, Biela AP

EMDB-55682:
human type ribosome reconstruction from frames 1-80
Method: single particle / : Wazny G, Glatt S, Indyka P, Jaciuk M, Rawski M, Biela AP

EMDB-54989:
Open conformation dome complex including the Sec-translocon (SecYEG-SecA-SecDF) with inward-facing SecDF from untreated Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Jensen RK, Xue L, Mahamid J

EMDB-54990:
Open conformation dome complex including the Sec-translocon (SecYEG-SecA-SecDF) with inward-facing SecDF and substrate from untreated Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Jensen RK, Xue L, Mahamid J

EMDB-54991:
Closed conformation dome complex including the Sec-translocon in the minor SecA conformation (SecYEG-SecA-SecDF) in untreated Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Jensen RK, Xue L, Mahamid J

EMDB-54992:
Open conformation dome complex including the Sec-translocon (SecYEG-SecDF) from untreated Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Jensen RK, Xue L, Mahamid J

EMDB-54993:
Open conformation dome complex including the Sec-translocon (SecYEG-SecA-SecDF) from untreated Mycoplasma pneumoniae cell
Method: subtomogram averaging / : Jensen RK, Xue L, Mahamid J

EMDB-55013:
Multibody refinement of pooled Ribosome-Sec translocon-Dome supercomplexes from four antibiotic treated Mycoplasma pneumoniae datasets, body 3/3
Method: subtomogram averaging / : Xue L, Jensen R, Mahamid J

EMDB-55014:
Multibody refinement of pooled Ribosome-Sec translocon-Dome supercomplexes from four antibiotic treated Mycoplasma pneumoniae datasets, body 2/3
Method: subtomogram averaging / : Xue L, Jensen R, Mahamid J

EMDB-55016:
Multibody refinement of pooled Ribosome-Sec translocon-Dome supercomplexes from four antibiotic treated Mycoplasma pneumoniae datasets, body 1/3
Method: subtomogram averaging / : Xue L, Jensen R, Mahamid J

EMDB-55018:
Ribosome-Sec translocon-Dome supercomplex in chloramphenicol treated Mycoplasma pneumoniae cells imaged on K3 camera
Method: subtomogram averaging / : Xue L, Jensen RK, Mahamid J

EMDB-55020:
Ribosome-Sec translocon-Dome supercomplex in spectinomycin treated Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Xue L, Jensen R, Mahamid J

EMDB-55021:
Ribosome-Sec translocon-Dome supercomplex in puseudoridimycin treated Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Xue L, Jensen RK, Mahamid J

EMDB-55022:
Ribosome-Sec translocon-Dome supercomplex in chloramphenicol treated Mycoplasma pneumoniae cells by K2 camera
Method: subtomogram averaging / : Xue L, Jensen RK, Mahamid J

EMDB-55023:
Ribosome-Sec translocon-Dome supercomplex in native untreated Mycoplasma pneumoniae cells
Method: subtomogram averaging / : Xue L, Jensen RK, Mahamid J

EMDB-75996:
In-situ structure of the Shigella injectisome from spa47 K165A mutant
Method: subtomogram averaging / : Tachiyama S, Liu J

EMDB-75997:
In-situ structure of the Shigella injectisome from spa33 F67A/F70A mutant
Method: subtomogram averaging / : Tachiyama S, Liu J

EMDB-75998:
In-situ structure of the Shigella injectisome from spa33 F70D mutant
Method: subtomogram averaging / : Tachiyama S, Liu J

EMDB-75999:
In-situ structure of the Shigella injectisome from mxiK L46D mutant
Method: subtomogram averaging / : Tachiyama S, Liu J

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more