[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 1,489 items for (author: li & asc)

EMDB-72852:
Structure of mink-derived HKU5 RBD in complex with ACE2 of N. vison
Method: single particle / : Li N, Keeler E, Tsybovsky Y, Zhou T

EMDB-72915:
CryoEM structure of F7 pyocin tail fiber in the pre-ejection state
Method: single particle / : He Y, Cai XY, Li ASC, Davidson AR, Zhou ZH

EMDB-72916:
CryoEM structure of F7 pyocin tail terminator
Method: single particle / : He Y, Cai XY, Li ASC, Davidson AR, Zhou ZH

EMDB-72917:
CryoEM structure of F7 pyocin tail tube
Method: single particle / : He Y, Cai XY, Li ASC, Davidson AR, Zhou ZH

EMDB-72918:
Asymmetric cryoEM reconstruction of F7 pyocin tail tube
Method: single particle / : He Y, Cai XY, Li ASC, Davidson AR, Zhou ZH

EMDB-72919:
CryoEM structure of F7 pyocin tail tip in the pre-ejection state
Method: single particle / : He Y, Cai XY, Li ASC, Davidson AR, Zhou ZH

EMDB-72920:
CryoEM structure of F7 pyocin tail tip in the post-ejection state
Method: single particle / : He Y, Cai XY, Li ASC, Davidson AR, Zhou ZH

EMDB-72921:
Asymmetric cryoEM structure of F7 pyocin tail tip in the post-ejection state
Method: single particle / : He Y, Cai XY, Li ASC, Davidson AR, Zhou ZH

EMDB-55075:
DeepEMhancer modified map of the human tNRA ligase complex
Method: single particle / : Pfleiderer MM, Jinek M

EMDB-55078:
minimal tRNA ligase complex bound by PYROXD1
Method: single particle / : Pfleiderer MM, Jinek M

EMDB-72202:
CryoEM structure of beta2-adrenergic receptor dimer mediated by a biased allosteric modulator in lipid nanodisc
Method: single particle / : Shen J, Kobilka BK

PDB-9q3l:
CryoEM structure of beta2-adrenergic receptor dimer mediated by a biased allosteric modulator in lipid nanodisc
Method: single particle / : Shen J, Kobilka BK

EMDB-48426:
Cryo-EM local map of six VRC35 Fabs bound to influenza H3N2 Victoria 2011 hemagglutinin head
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Kanekiyo M, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-48427:
Cryo-EM local map of dimeric VRC35 Fabs bound to N-linked glycans N126, N165, and N246 on influenza H3N2 Victoria 2011 hemagglutinin head
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Kanekiyo M, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-49628:
Composite map of three pairs of dimeric VRC36 Fabs bound to HIV-1 BG505.T332N DS-SOSIP.664 Env trimer
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Zhou T, Kwong PD

EMDB-49633:
Global map of six VRC36 Fabs bound to HIV-1 BG505.T332N DS-SOSIP.664 Env trimer
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Zhou T, Kwong PD

EMDB-74798:
Cryo-EM local density map of VRC35 Fab bound to N-linked glycans on the SARS-CoV-2 LP.8.1.9 spike protein
Method: single particle / : Cheng J, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-74801:
Cryo-EM map of VRC35 Fab bound to the SARS-CoV-2 LP.8.1.9 spike protein
Method: single particle / : Cheng J, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-74843:
Cryo-EM map of VRC35 Fab bound to the Lassa virus glycoprotein complex
Method: single particle / : Cheng J, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

PDB-9npm:
Composite map of three pairs of dimeric VRC36 Fabs bound to HIV-1 BG505.T332N DS-SOSIP.664 Env trimer
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Zhou T, Kwong PD

EMDB-54904:
Structure of trans-basal conformer of human CBS trapped in PLP-aminoacrylate intermediate state (CBS PLP-AA)- by single particle approach
Method: single particle / : Inayathulla M, Tomas M

EMDB-54905:
Structure of trans-basal conformer of human CBS trapped in PLP-serine external aldemine intermediate (CBS-PLP-Ser)- by single particle approach
Method: single particle / : Inayathulla M, Tomas M

EMDB-54925:
Structure of trans-basal conformer of human CBS trapped in PLP-aminoacrylate intermediate state (CBS PLP-AA)- by Helical processing.
Method: helical / : Inayathulla M, Tomas M

EMDB-55037:
Structure of trans-basal conformer of human CBS trapped in PLP-serine external aldemine intermediate (CBS-PLP-Ser)- by Helical approach
Method: helical / : Inayathulla M, Tomas M

EMDB-55097:
focused structure of regulatory domains of cis-basal conformer of human CBS induced by non-activating allosteric SAO ligand - by Helical approach
Method: helical / : Inayathulla M, Tomas M

EMDB-55099:
Structure of cis-basal conformer of human CBS induced by non-activating allosteric SAO ligand - by single particle approach.
Method: single particle / : Inayathulla M, Tomas M

EMDB-55105:
Structure of trans-basal conformer of wild-type human CBS alone (internal aldemine)- by single particle approach
Method: single particle / : Inayathulla M, Tomas M

EMDB-55115:
Structure of trans-basal conformer of wild-type human CBS enzyme in absence of substrate and allosteric activators- by Helical approach
Method: helical / : Inayathulla M, Tomas M

PDB-9shm:
Structure of trans-basal conformer of human CBS trapped in PLP-aminoacrylate intermediate state (CBS PLP-AA)- by single particle approach
Method: single particle / : Inayathulla M, Tomas M

PDB-9shn:
Structure of trans-basal conformer of human CBS trapped in PLP-serine external aldemine intermediate (CBS-PLP-Ser)- by single particle approach
Method: single particle / : Inayathulla M, Tomas M

PDB-9si8:
Structure of trans-basal conformer of human CBS trapped in PLP-aminoacrylate intermediate state (CBS PLP-AA)- by Helical processing.
Method: helical / : Inayathulla M, Tomas M

PDB-9sml:
Structure of trans-basal conformer of human CBS trapped in PLP-serine external aldemine intermediate (CBS-PLP-Ser)- by Helical approach
Method: helical / : Inayathulla M, Tomas M

PDB-9spv:
focused structure of regulatory domains of cis-basal conformer of human CBS induced by non-activating allosteric SAO ligand - by Helical approach
Method: helical / : Inayathulla M, Tomas M

PDB-9spw:
Structure of cis-basal conformer of human CBS induced by non-activating allosteric SAO ligand - by single particle approach.
Method: single particle / : Inayathulla M, Tomas M

PDB-9sq0:
Structure of trans-basal conformer of wild-type human CBS alone (internal aldemine)- by single particle approach
Method: single particle / : Inayathulla M, Tomas M

PDB-9sqq:
Structure of trans-basal conformer of wild-type human CBS enzyme in absence of substrate and allosteric activators- by Helical approach
Method: helical / : Inayathulla M, Tomas M

EMDB-54457:
Structure of the human debranched intron spliceosome (DIS) (Map1)
Method: single particle / : Boreikaite V, Vorlaender MK, Plaschka C

EMDB-54458:
Structure of the human debranched intron spliceosome (DIS) (Map2)
Method: single particle / : Boreikaite V, Vorlaender MK, Plaschka C

EMDB-54459:
Structure of the human debranched intron spliceosome (DIS) (Map3)
Method: single particle / : Boreikaite V, Vorlaender MK, Plaschka C

EMDB-54460:
Structure of the human debranched intron spliceosome (DIS) (Map4)
Method: single particle / : Boreikaite V, Vorlaender MK, Plaschka C

EMDB-54461:
Structure of the human debranched intron spliceosome (DIS) (Map5)
Method: single particle / : Boreikaite V, Vorlaender MK, Plaschka C

EMDB-54462:
Structure of the human debranched intron spliceosome (DIS) (Map6)
Method: single particle / : Boreikaite V, Vorlaender MK, Plaschka C

EMDB-54463:
Structure of the human debranched intron spliceosome (DIS) (Map7)
Method: single particle / : Boreikaite V, Vorlaender MK, Plaschka C

EMDB-54464:
Structure of the human debranched intron spliceosome (DIS) (Map8)
Method: single particle / : Boreikaite V, Vorlaender MK, Plaschka C

EMDB-54465:
Structure of the human debranched intron spliceosome (DIS) (Map9)
Method: single particle / : Boreikaite V, Vorlaender MK, Plaschka C

EMDB-54466:
Structure of the human debranched intron spliceosome (DIS) (Map10)
Method: single particle / : Boreikaite V, Vorlaender MK, Plaschka C

EMDB-54467:
Structure of the human intron-lariat spliceosome-Aquarius (ILSaqr) (Map1)
Method: single particle / : Boreikaite V, Vorlaender MK, Plaschka C

EMDB-54468:
Structure of the human intron-lariat spliceosome-Aquarius (ILSaqr) (Map2)
Method: single particle / : Boreikaite V, Vorlaender MK, Plaschka C

EMDB-54469:
Structure of the human intron-lariat spliceosome-Aquarius (ILSaqr) (Map3)
Method: single particle / : Boreikaite V, Vorlaender MK, Plaschka C

EMDB-54470:
Structure of the human intron-lariat spliceosome-Aquarius (ILSaqr) (Map4)
Method: single particle / : Boreikaite V, Vorlaender MK, Plaschka C

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more