[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 58 items for (author: kramer & g)

EMDB-53553:
Structure of Stalled Beta-Galactosidase 70S Ribosome Nascent Chain
Method: single particle / : Jurkeviciute G, He JZ, Enchev RI

PDB-9r3a:
Structure of Stalled Beta-Galactosidase 70S Ribosome Nascent Chain
Method: single particle / : Jurkeviciute G, He JZ, Enchev RI

EMDB-70475:
HIV-1 Env BG505 SOSIP.664-His in complex with PGT122 and 3BNC117 Fabs
Method: single particle / : Andrade TG, Ozorowski G, Ward AB

EMDB-70476:
HIV-1 Env BG505 SOSIP.664-dPG-His in complex with PGT122 and 3BNC117 Fabs
Method: single particle / : Andrade TG, Ozorowski G, Ward AB

PDB-9ogt:
HIV-1 Env BG505 SOSIP.664-His in complex with PGT122 and 3BNC117 Fabs
Method: single particle / : Andrade TG, Ozorowski G, Ward AB

PDB-9ogu:
HIV-1 Env BG505 SOSIP.664-dPG-His in complex with PGT122 and 3BNC117 Fabs
Method: single particle / : Andrade TG, Ozorowski G, Ward AB

EMDB-47004:
Focused refinement map on C-terminal half of LRRK2 (RoC-CORA domains)
Method: single particle / : Sanz-Murillo M, Leschziner A

EMDB-47006:
Structure of the C-terminal half of LRRK2 bound to RN277 (Type-II inhibitor)
Method: single particle / : Sanz-Murillo M, Leschziner A

EMDB-47025:
Focused refinement map on C-terminal half of LRRK2 bound to RN277 (CORB-Kinase-WD40 domains)
Method: single particle / : Sanz-Murillo M, Leschziner A

EMDB-43870:
Local refined map of VPS35L(partial)-VPS26C-SNX17
Method: single particle / : Chen B, Chen Z, Han Y, Boesch DJ, Juneja P, Burstein E, Fung HYJ

EMDB-43871:
Local refined map of VPS35L(partial)-VPS29
Method: single particle / : Chen B, Chen Z, Han Y, Boesch DJ, Juneja P, Burstein E, Fung HYJ

EMDB-43872:
Human Retriever VPS35L/VPS29/VPS26C complex bound to SNX17 peptide (Composite Map)
Method: single particle / : Chen B, Chen Z, Han Y, Boesch DJ, Juneja P, Burstein E, Fung HYJ

EMDB-43873:
Human Retriever VPS35L/VPS29/VPS26C complex bound to SNX17 peptide (Consensus map)
Method: single particle / : Chen B, Chen Z, Han Y, Boesch DJ, Juneja P, Burstein E, Fung HYJ

PDB-9au7:
Human Retriever VPS35L/VPS29/VPS26C complex bound to SNX17 peptide (Composite Map)
Method: single particle / : Chen B, Chen Z, Han Y, Boesch DJ, Juneja P, Burstein E, Fung HYJ

EMDB-43139:
SARS-CoV-2 Spike S2 bound to Fab 54043-5
Method: single particle / : Johnson NV, McLellan JS

PDB-8vcr:
SARS-CoV-2 Spike S2 bound to Fab 54043-5
Method: single particle / : Johnson NV, McLellan JS

EMDB-40884:
Human VPS29/VPS35L Complex (Locally refined map)
Method: single particle / : Chen Z, Chen B, Burstein E, Han Y

EMDB-40885:
Human VPS35L/VPS29/VPS26C Complex
Method: single particle / : Chen Z, Chen B, Burstein E, Han Y

EMDB-40886:
Human Retriever VPS35L/VPS29/VPS26C Complex (Composite Map)
Method: single particle / : Chen Z, Chen B, Burstein E, Han Y

PDB-8sym:
Human VPS29/VPS35L Complex (Locally refined map)
Method: single particle / : Chen Z, Chen B, Burstein E, Han Y

PDB-8syn:
Human VPS35L/VPS29/VPS26C Complex
Method: single particle / : Chen Z, Chen B, Burstein E, Han Y

PDB-8syo:
Human Retriever VPS35L/VPS29/VPS26C Complex (Composite Map)
Method: single particle / : Chen Z, Chen B, Burstein E, Han Y

EMDB-15311:
Dedicated chaperone at the ribosome safeguards the proteostasis network during eEF1A biogenesis
Method: single particle / : Minoia M, Quintana-Cordero J, Katharina J, Kotan I, Turnbull KJ, Masser AE, Merker D, Gouarin E, Ehrenbolger K, Barandun J, Hauryliuk V, Bukau B, Kramer G, Andreasson C

EMDB-16010:
Cryo-EM structure of SARS-CoV-2 spike (HexaPro variant) in complex with nanobody W25 (map 3, focus refinement on RBD, W25 and adjacent NTD)
Method: single particle / : Lauer S, Spahn CMT, Schwefel D

EMDB-16030:
Cryo-EM structure of SARS-CoV-2 spike (Omicron BA.1 variant) in complex with nanobody W25 (map 5, focus refinement on RBD, W25 and adjacent NTD)
Method: single particle / : Modhiran N, Lauer S, Spahn CMT, Watterson D, Schwefel D

PDB-8bev:
Cryo-EM structure of SARS-CoV-2 spike (HexaPro variant) in complex with nanobody W25 (map 3, focus refinement on RBD, W25 and adjacent NTD)
Method: single particle / : Lauer S, Spahn CMT, Schwefel D

PDB-8bgg:
Cryo-EM structure of SARS-CoV-2 spike (Omicron BA.1 variant) in complex with nanobody W25 (map 5, focus refinement on RBD, W25 and adjacent NTD)
Method: single particle / : Modhiran N, Lauer S, Spahn CMT, Watterson D, Schwefel D

EMDB-25574:
SARS-CoV-2 S-RBD + Fab 54042-4
Method: single particle / : Johnson NV, Mclellan JS

PDB-7t01:
SARS-CoV-2 S-RBD + Fab 54042-4
Method: single particle / : Johnson NV, Mclellan JS

EMDB-14156:
Cryo-EM reconstruction of the Bacillus subtilis MutS2-collided disome complex (MutS2 conf.1; Leading 70S)
Method: single particle / : Filbeck S, Pfeffer S

EMDB-14157:
Composite reconstruction of the Bacillus subtilis collided disome (Leading 70S)
Method: single particle / : Filbeck S, Pfeffer S

EMDB-14158:
Composite reconstruction of the Bacillus subtilis collided disome (Collided 70S)
Method: single particle / : Filbeck S, Pfeffer S

EMDB-14159:
Cryo-EM reconstruction of the Bacillus subtilis MutS2-collided disome complex (MutS2 conf.2; Leading 70S)
Method: single particle / : Filbeck S, Pfeffer S

EMDB-14160:
Cryo-EM reconstruction of the Bacillus subtilis MutS2-collided disome complex (Leading 70S)
Method: single particle / : Filbeck S, Pfeffer S

EMDB-14161:
Cryo-EM reconstruction of the Bacillus subtilis MutS2-collided disome complex (Collided 70S)
Method: single particle / : Filbeck S, Pfeffer S

EMDB-14162:
Cryo-EM reconstruction of the Bacillus subtilis collided disome (Leading 70S)
Method: single particle / : Filbeck S, Pfeffer S

EMDB-14163:
Cryo-EM reconstruction of the Bacillus subtilis collided disome (Leading 30S)
Method: single particle / : Filbeck S, Pfeffer S

EMDB-14164:
Cryo-EM reconstruction of the Bacillus subtilis collided disome (Collided 70S)
Method: single particle / : Filbeck S, Pfeffer S

EMDB-14165:
Cryo-EM reconstruction of the Bacillus subtilis collided disome (Collided 30S)
Method: single particle / : Filbeck S, Pfeffer S

EMDB-14166:
Cryo-EM reconstruction of Bacillus subtilis obstructed 50S subunit co-purified with MutS2
Method: single particle / : Filbeck S, Pfeffer S

PDB-7qv1:
Bacillus subtilis collided disome (Leading 70S)
Method: single particle / : Filbeck S, Pfeffer S

PDB-7qv2:
Bacillus subtilis collided disome (Collided 70S)
Method: single particle / : Filbeck S, Pfeffer S

PDB-7qv3:
Bacillus subtilis MutS2-collided disome complex (MutS2 conf.2; Leading 70S)
Method: single particle / : Filbeck S, Pfeffer S

EMDB-26064:
SARS-CoV-2 S + Fabs 5317-4 and 5217-10
Method: single particle / : Johnson NV, McLellan JS

EMDB-12605:
Human TRiC complex in closed state with nanobody bound (Consensus Map)
Method: single particle / : Kelly JJ, Chi G

EMDB-12606:
Human TRiC complex in closed state with nanobody Nb18, actin and PhLP2A bound
Method: single particle / : Kelly JJ, Chi G

EMDB-12607:
Human TRiC complex in closed state with nanobody and tubulin bound
Method: single particle / : Kelly JJ, Chi G

EMDB-12608:
Human TRiC complex in open state with nanobody bound
Method: single particle / : Kelly JJ, Chi G

PDB-7nvl:
Human TRiC complex in closed state with nanobody bound (Consensus Map)
Method: single particle / : Kelly JJ, Chi G, Bulawa C, Paavilainen VO, Bountra C, Huiskonen JT, Yue W, Structural Genomics Consortium (SGC)

PDB-7nvm:
Human TRiC complex in closed state with nanobody Nb18, actin and PhLP2A bound
Method: single particle / : Kelly JJ, Chi G, Bulawa C, Paavilainen VO, Bountra C, Huiskonen JT, Yue W, Structural Genomics Consortium (SGC)

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more