[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 23 items for (author: konishi & y)

EMDB-66460:
Cryo-EM Structure of human complement C1s CUB domain in complex with RAY121
Method: single particle / : Kawauchi H, Adrian H, Gupta G, Koga H, Fujii T, Fukumura T, Ishino S, Irie M, Torizawa T

PDB-9x1h:
Cryo-EM Structure of human complement C1s CUB domain in complex with RAY121
Method: single particle / : Kawauchi H, Adrian H, Gupta G, Koga H, Fujii T, Fukumura T, Ishino S, Irie M, Torizawa T

EMDB-70473:
Cryo-EM analysis of human H2A.Z on methylated Sat2R-P DNA
Method: single particle / : Shih RM, Arimura Y

EMDB-70474:
Cryo-EM analysis of human H2A.Z on Sat2R-P DNA (v1)
Method: single particle / : Shih RM, Arimura Y

EMDB-70480:
Cryo-EM analysis of human H2A.Z on 601L DNA
Method: single particle / : Shih RM, Arimura Y

EMDB-70481:
Cryo-EM analysis of human H2A.Z on methylated 601L DNA
Method: single particle / : Shih RM, Arimura Y

EMDB-61843:
Yeast Mitochondrial PORIN complex
Method: single particle / : Takeda H, Endo T, Kikkawa M, Tsutsumi A

PDB-9jvq:
Yeast Mitochondrial PORIN complex
Method: single particle / : Takeda H, Endo T, Kikkawa M, Tsutsumi A

EMDB-43238:
NPM2-H1.8 isolated from Xenopus egg extract
Method: single particle / : Arimura Y, Funabiki H

EMDB-43239:
NPM2-H1.8 isolated from Xenopus egg extract (Bent form)
Method: single particle / : Arimura Y, Funabiki H

EMDB-43240:
NPM2-H1.8 isolated from Xenopus egg extract (Stretched form)
Method: single particle / : Arimura Y, Funabiki H

PDB-8vhi:
NPM2-H1.8 isolated from Xenopus egg extract
Method: single particle / : Arimura Y, Funabiki H

PDB-8vhj:
NPM2-H1.8 isolated from Xenopus egg extract (Bent form)
Method: single particle / : Arimura Y, Funabiki H

PDB-8vhk:
NPM2-H1.8 isolated from Xenopus egg extract (Stretched form)
Method: single particle / : Arimura Y, Funabiki H

EMDB-34429:
Cryo-EM structure of KpFtsZ-monobody double helical tube
Method: helical / : Fujita J, Amesaka H, Yoshizawa T, Kuroda N, Kamimura N, Hara M, Inoue T, Namba K, Tanaka S, Matsumura H

EMDB-35344:
Cryo-EM structure of KpFtsZ single filament
Method: helical / : Fujita J, Amesaka H, Yoshizawa T, Kuroda N, Kamimura N, Hibino K, Konishi T, Kato Y, Hara M, Inoue T, Namba K, Tanaka S, Matsumura H

PDB-8h1o:
Cryo-EM structure of KpFtsZ-monobody double helical tube
Method: helical / : Fujita J, Amesaka H, Yoshizawa T, Kuroda N, Kamimura N, Hara M, Inoue T, Namba K, Tanaka S, Matsumura H

PDB-8ibn:
Cryo-EM structure of KpFtsZ single filament
Method: helical / : Fujita J, Amesaka H, Yoshizawa T, Kuroda N, Kamimura N, Hibino K, Konishi T, Kato Y, Hara M, Inoue T, Namba K, Tanaka S, Matsumura H

EMDB-32078:
Cryo-EM structure of the SARS-CoV-2 spike protein (2-up RBD) bound to neutralizing nanobodies P86
Method: single particle / : Maeda R, Fujita J

EMDB-32079:
Cryo-EM structure of the SARS-CoV-2 spike protein (3-up RBD) bound to neutralizing nanobodies P86
Method: single particle / : Maeda R, Fujita J, Konishi Y, Kazuma Y, Yamazaki H, Anzai I, Yamaguchi K, Kasai K, Nagata K, Yamaoka Y, Miyakawa K, Ryo A, Shirakawa K, Makino F, Matsuura Y, Inoue T, Imura A, Namba K, Takaori-Kondo A

EMDB-32080:
Cryo-EM structure of the SARS-CoV-2 spike protein (1-up RBD) bound to neutralizing nanobodies P17
Method: single particle / : Maeda R, Fujita J, Konishi Y, Kazuma Y, Yamazaki H, Anzai I, Yamaguchi K, Kasai K, Nagata K, Yamaoka Y, Miyakawa K, Ryo A, Shirakawa K, Makino F, Matsuura Y, Inoue T, Imura A, Namba K, Takaori-Kondo A

EMDB-32081:
Cryo-EM structure of the SARS-CoV-2 spike protein (2-up RBD) bound to neutralizing nanobodies P17
Method: single particle / : Maeda R, Fujita J, Konishi Y, Kazuma Y, Yamazaki H, Anzai I, Yamaguchi K, Kasai K, Nagata K, Yamaoka Y, Miyakawa K, Ryo A, Shirakawa K, Makino F, Matsuura Y, Inoue T, Imura A, Namba K, Takaori-Kondo A

PDB-7vq0:
Cryo-EM structure of the SARS-CoV-2 spike protein (2-up RBD) bound to neutralizing nanobodies P86
Method: single particle / : Maeda R, Fujita J, Konishi Y, Kazuma Y, Yamazaki H, Anzai I, Yamaguchi K, Kasai K, Nagata K, Yamaoka Y, Miyakawa K, Ryo A, Shirakawa K, Makino F, Matsuura Y, Inoue T, Imura A, Namba K, Takaori-Kondo A

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more