[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 619 items for (author: kim & ed)

EMDB-70288:
Cryo-EM structure of EBV gB prefusion construct C3-GT
Method: single particle / : McCool RS, McLellan JS

PDB-9oal:
Cryo-EM structure of EBV gB prefusion construct C3-GT
Method: single particle / : McCool RS, McLellan JS

EMDB-49494:
Thermothelomyces thermophilus SAM complex closed conformation
Method: single particle / : Diederichs K, Botos I, Buchanan SK

EMDB-49495:
Thermothelomyces thermophilus SAM complex open conformation
Method: single particle / : Diederichs K, Botos I, Buchanan SK

EMDB-49496:
Thermothelomyces thermophilus SAM complex bound to darobactin A
Method: single particle / : Diederichs K, Botos I, Buchanan SK

PDB-9nk6:
Thermothelomyces thermophilus SAM complex closed conformation
Method: single particle / : Diederichs K, Botos I, Buchanan SK

PDB-9nk7:
Thermothelomyces thermophilus SAM complex open conformation
Method: single particle / : Diederichs K, Botos I, Buchanan SK

PDB-9nk8:
Thermothelomyces thermophilus SAM complex bound to darobactin A
Method: single particle / : Diederichs K, Botos I, Buchanan SK

EMDB-48606:
CryoEM structure of extracellular domain of human HER2 complexed with two nano-bodies 27A05 and 47D05
Method: single particle / : Bruch EM, Rak A

EMDB-48615:
CryoEM structure of extracellular domain of human HER2 complexed with nano-bodies 29E09
Method: single particle / : Bruch EM, Rak A

PDB-9mte:
CryoEM structure of extracellular domain of human HER2 complexed with two nano-bodies 27A05 and 47D05
Method: single particle / : Bruch EM, Rak A

PDB-9mtx:
CryoEM structure of extracellular domain of human HER2 complexed with nano-bodies 29E09
Method: single particle / : Bruch EM, Rak A

EMDB-52038:
The L2A-I alpha-synuclein fibril in the presence of MODAG-005 (short incubation)
Method: helical / : Frieg B, Kim M, Griesinger C, Schroeder GF

EMDB-52039:
The L2A-II alpha-synuclein fibril in the presence of MODAG-005 (short incubation)
Method: helical / : Frieg B, Kim M, Griesinger C, Schroeder GF

EMDB-52040:
The L2C alpha-synuclein fibril in the presence of MODAG-005 (short incubation)
Method: helical / : Frieg B, Kim M, Griesinger C, Schroeder GF

EMDB-52041:
The L2A-I alpha-synuclein fibril in the presence of MODAG-005 (long incubation)
Method: helical / : Frieg B, Kim M, Griesinger C, Schroeder GF

EMDB-52042:
The L2A-II alpha-synuclein fibril in the presence of MODAG-005 (long incubation)
Method: helical / : Frieg B, Kim M, Griesinger C, Schroeder GF

EMDB-52043:
The L2C alpha-synuclein fibril in the presence of MODAG-005 (long incubation)
Method: helical / : Frieg B, Kim M, Griesinger C, Schroeder GF

PDB-9hc6:
The L2A-I alpha-synuclein fibril in the presence of MODAG-005 (short incubation)
Method: helical / : Frieg B, Kim M, Griesinger C, Schroeder GF

PDB-9hc7:
The L2A-II alpha-synuclein fibril in the presence of MODAG-005 (short incubation)
Method: helical / : Frieg B, Kim M, Griesinger C, Schroeder GF

PDB-9hc8:
The L2C alpha-synuclein fibril in the presence of MODAG-005 (short incubation)
Method: helical / : Frieg B, Kim M, Griesinger C, Schroeder GF

PDB-9hc9:
The L2A-I alpha-synuclein fibril in the presence of MODAG-005 (long incubation)
Method: helical / : Frieg B, Kim M, Griesinger C, Schroeder GF

PDB-9hca:
The L2A-II alpha-synuclein fibril in the presence of MODAG-005 (long incubation)
Method: helical / : Frieg B, Kim M, Griesinger C, Schroeder GF

PDB-9hcb:
The L2C alpha-synuclein fibril in the presence of MODAG-005 (long incubation)
Method: helical / : Frieg B, Kim M, Griesinger C, Schroeder GF

EMDB-49373:
CryoEM Structure of De Novo Antibody Fragment scFv 6 with C. difficile Toxin B (TcdB)
Method: single particle / : Weidle C, Borst AJ

EMDB-49405:
CryoEM Structure of De Novo VHH, VHH_flu_01, bound to influenza HA, strain A/USA:Iowa/1943 H1N1
Method: single particle / : Borst AJ, Weidle C

PDB-9nfu:
CryoEM Structure of De Novo Antibody Fragment scFv 6 with C. difficile Toxin B (TcdB)
Method: single particle / : Weidle C, Borst AJ

PDB-9nh7:
CryoEM Structure of De Novo VHH, VHH_flu_01, bound to influenza HA, strain A/USA:Iowa/1943 H1N1.
Method: single particle / : Borst AJ, Weidle C

EMDB-53046:
Mouse otoferlin (216-1931) in complex with an MSP2N2 lipid nanodisc (30 mol% DOPS, 10 mol% PI(4,5)P2)
Method: single particle / : Cretu C, Moser T

PDB-9qe2:
Mouse otoferlin (216-1931) in complex with an MSP2N2 lipid nanodisc (30 mol% DOPS, 10 mol% PI(4,5)P2)
Method: single particle / : Cretu C, Moser T

EMDB-54802:
Mouse otoferlin (216-1931) in the lipid-free, Ca2+-bound state, "open" conformation (class 2)
Method: single particle / : Cretu C, Moser T

EMDB-54805:
Mouse otoferlin (216-1931) in complex with a lipid nanodisc (comprising 25% PS and 5% PIP2)
Method: single particle / : Cretu C, Moser T

EMDB-54809:
Mouse otoferlin (216-1931) in the lipid-free Ca2+-bound state, "open" conformation (class 1)
Method: single particle / : Cretu C, Moser T

EMDB-54827:
Mouse otoferlin (residues 216-1931) in the lipid-bound state (merged datasets)
Method: single particle / : Cretu C, Moser T

EMDB-54883:
Mouse otoferlin (216-1931) in the lipid-free, Ca2+-free state ("loose" conformation)
Method: single particle / : Cretu C, Moser T

EMDB-54923:
Mouse otoferlin (216-1931) in the lipid-free Ca2+-bound state, "closed-like" conformation
Method: single particle / : Cretu C, Moser T

PDB-9se5:
Mouse otoferlin (216-1931) in the lipid-free, Ca2+-bound state, "open" conformation (class 2)
Method: single particle / : Cretu C, Moser T

PDB-9sea:
Mouse otoferlin (216-1931) in complex with a lipid nanodisc (comprising 25% PS and 5% PIP2)
Method: single particle / : Cretu C, Moser T

PDB-9seg:
Mouse otoferlin (216-1931) in the lipid-free Ca2+-bound state, "open" conformation (class 1)
Method: single particle / : Cretu C, Moser T

PDB-9sfl:
Mouse otoferlin (residues 216-1931) in the lipid-bound state (merged datasets)
Method: single particle / : Cretu C, Moser T

PDB-9sh0:
Mouse otoferlin (216-1931) in the lipid-free, Ca2+-free state ("loose" conformation)
Method: single particle / : Cretu C, Moser T

PDB-9si1:
Mouse otoferlin (216-1931) in the lipid-free Ca2+-bound state, "closed-like" conformation
Method: single particle / : Cretu C, Moser T

EMDB-48331:
Structure of the Respiratory Syncytial Virus Fusion Protein Bound to Human Antibodies RSV_2245 and RSV_3301
Method: single particle / : Johnson NV, McLellan JS

PDB-9mkn:
Structure of the Respiratory Syncytial Virus Fusion Protein Bound to Human Antibodies RSV_2245 and RSV_3301
Method: single particle / : Johnson NV, McLellan JS

EMDB-48375:
GammaH2AX containing nucleosomes, Parallel stack
Method: single particle / : Panigrahi R, Edwards R, Glover JNM

EMDB-48376:
GammaH2AX containing nucleosome, Canonical (Class 1)
Method: single particle / : Panigrahi R, Edwards R, Glover JNM

EMDB-48378:
GammaH2AX containing nucleosome, Half-wrapped (Class 2)
Method: single particle / : Panigrahi R, Edwards R, Glover JNM

EMDB-48379:
GammaH2AX containing nucleosome, Extended (Class 3)
Method: single particle / : Panigrahi R, Edwards R, Glover JNM

EMDB-48392:
H2AX containing nucleosome, Canonical (Class 1)
Method: single particle / : Panigrahi R, Edwards R, Glover JNM

EMDB-48394:
H2AX containing nucleosomes, Parallel stack
Method: single particle / : Panigrahi R, Edwards R, Glover JNM

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more