[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 468 items for (author: kim & ed)

EMDB-37910:
Structure of the SARS-CoV-2 BA.2.86 spike glycoprotein (closed state)
Method: single particle / : Yajima H, Anraku Y, Kita S, Kimura K, Maenaka K, Hashiguchi T

EMDB-38459:
Structure of the SARS-CoV-2 BA.2.86 spike protein (1-up state)
Method: single particle / : Yajima H, Anraku Y, Kita S, Kimura K, Maenaka K, Hashiguchi T

EMDB-38686:
Structure of SARS-CoV-2 BA.2.86 spike glycoprotein in complex with ACE2 (2-up state)
Method: single particle / : Yajima H, Anraku Y, Kita S, Kimura K, Maenaka K, Hashiguchi T

EMDB-38687:
Structure of SARS-CoV-2 BA.2.86 spike glycoprotein in complex with ACE2 (2-up and 1-down state)
Method: single particle / : Yajima H, Anraku Y, Kita S, Kimura K, Maenaka K, Hashiguchi T

EMDB-38688:
Structure of SARS-CoV-2 BA.2.86 spike RBD in complex with ACE2 (up state)
Method: single particle / : Yajima H, Anraku Y, Kita S, Kimura K, Maenaka K, Hashiguchi T

EMDB-38689:
Structure of SARS-CoV-2 BA.2.86 spike RBD in complex with ACE2 (down state)
Method: single particle / : Yajima H, Anraku Y, Kita S, Kimura K, Maenaka K, Hashiguchi T

EMDB-38690:
Structure of SARS-CoV-2 BA.2.86 spike glycoprotein in complex with ACE2 (3-up state)
Method: single particle / : Yajima H, Anraku Y, Kita S, Kimura K, Maenaka K, Hashiguchi T

EMDB-60886:
Structure of SARS-CoV-2 JN.1 spike RBD in complex with ACE2 (up state)
Method: single particle / : Yajima H, Anraku Y, Kita S, Kimura K, Maenaka K, Hashiguchi T

EMDB-60904:
Structure of SARS-CoV-2 JN.1 spike glycoprotein in complex with ACE2 (2-up state)
Method: single particle / : Yajima H, Anraku Y, Kita S, Kimura K, Maenaka K, Hashiguchi T

EMDB-60905:
Structure of SARS-CoV-2 BA.2.86 spike glycoprotein in complex with ACE2 (1 highly-open RBD and 1 partially-open RBD)
Method: single particle / : Yajima H, Anraku Y, Kita S, Kimura K, Maenaka K, Hashiguchi T

EMDB-60906:
Structure of SARS-CoV-2 JN.1 spike glycoprotein in complex with ACE2 (2-up and 1-down state)
Method: single particle / : Yajima H, Anraku Y, Kita S, Kimura K, Maenaka K, Hashiguchi T

EMDB-42116:
HCN1 complex with propofol
Method: single particle / : Kim ED, Nimigean CM

EMDB-42117:
HCN1 nanodisc
Method: single particle / : Kim ED, Nimigean CM

EMDB-44425:
HCN1 M305L with propofol
Method: single particle / : Kim ED, Nimigean CM

EMDB-44426:
HCN1 M305L holo
Method: single particle / : Kim ED, Nimigean CM

EMDB-18180:
cryoEM structure of SARS-CoV2 Spike trimer in complex with Fab23
Method: single particle / : Hallberg M, Das H

PDB-8q5y:
cryoEM structure of SARS-CoV2 Spike trimer in complex with Fab23
Method: single particle / : Hallberg M, Das H

EMDB-41874:
CryoEM structure of A/Solomon Islands/3/2006 H1 HA in complex with 05.GC.w2.3C10-H1_SI06
Method: single particle / : Moore N, Han J, Ward AB, Wilson IA

EMDB-16375:
SARS-CoV2 Omicron BA.1 RBD in complex with CAB-A17 antibody
Method: single particle / : Das H, Hallberg BM

PDB-8c0y:
SARS-CoV2 Omicron BA.1 RBD in complex with CAB-A17 antibody
Method: single particle / : Das H, Hallberg BM

EMDB-42970:
Model and map from local refinement of a CAB-A17 - Omicron Ba.1 spike complex
Method: single particle / : Hallberg BM, Das H

PDB-8v4f:
Model and map from local refinement of a CAB-A17 - Omicron Ba.1 spike complex
Method: single particle / : Hallberg BM, Das H

EMDB-40261:
DDB1/CRBN in complex with ARV-471 and the ER ligand-binding domain
Method: single particle / : Digianantonio K, Drulyte I, Gough S, Bekes M, Taylor I

EMDB-40825:
10E8-GT10.2 immunogen in complex with human Fab 10E8 and mouse Fab W6-10
Method: single particle / : Huang J, Ozorowski G, Ward AB

PDB-8sx3:
10E8-GT10.2 immunogen in complex with human Fab 10E8 and mouse Fab W6-10
Method: single particle / : Huang J, Ozorowski G, Ward AB

EMDB-41248:
Structure of AT118-H Nanobody Antagonist in Complex with the Angiotensin II Type I Receptor
Method: single particle / : Skiba MA, Kruse AC

EMDB-41249:
Structure of AT118-L Nanobody Antagonist in Complex with the Angiotensin II Type I Receptor and Losartan
Method: single particle / : Skiba MA, Kruse AC

PDB-8th3:
Structure of AT118-H Nanobody Antagonist in Complex with the Angiotensin II Type I Receptor
Method: single particle / : Skiba MA, Kruse AC

PDB-8th4:
Structure of AT118-L Nanobody Antagonist in Complex with the Angiotensin II Type I Receptor and Losartan
Method: single particle / : Skiba MA, Kruse AC

EMDB-18658:
Structure of the NCOA4 (Nuclear Receptor Coactivator 4)-FTH1 (H-Ferritin) complex
Method: single particle / : Hoelzgen F, Klukin E, Zalk R, Shahar A, Cohen-Schwartz S, Frank GA

PDB-8qu9:
Structure of the NCOA4 (Nuclear Receptor Coactivator 4)-FTH1 (H-Ferritin) complex
Method: single particle / : Hoelzgen F, Klukin E, Zalk R, Shahar A, Cohen-Schwartz S, Frank GA

EMDB-38453:
Structure of the SARS-CoV-2 EG.5.1 spike glycoprotein in complex with ACE2 (1-up state)
Method: single particle / : Nomai T, Anraku Y, Kita S, Hashiguchi T, Maenaka K

EMDB-38454:
Structure of the SARS-CoV-2 EG.5.1 spike RBD in complex with ACE2
Method: single particle / : Nomai T, Anraku Y, Kita S, Hashiguchi T, Maenaka K

PDB-8xlm:
Structure of the SARS-CoV-2 EG.5.1 spike glycoprotein in complex with ACE2 (1-up state)
Method: single particle / : Nomai T, Anraku Y, Kita S, Hashiguchi T, Maenaka K

PDB-8xln:
Structure of the SARS-CoV-2 EG.5.1 spike RBD in complex with ACE2
Method: single particle / : Nomai T, Anraku Y, Kita S, Hashiguchi T, Maenaka K

EMDB-37648:
SARS-CoV-2 EG.5.1 spike glycoprotein (1-up state)
Method: single particle / : Nomai T, Anraku Y, Kita S, Hashiguchi T, Maenaka K

EMDB-37650:
SARS-CoV-2 EG.5.1 spike glycoprotein (closed-2 state)
Method: single particle / : Nomai T, Anraku Y, Kita S, Hashiguchi T, Maenaka K

EMDB-37651:
SARS-CoV-2 EG.5.1 spike glycoprotein (closed-1 state)
Method: single particle / : Nomai T, Anraku Y, Kita S, Hashiguchi T, Maenaka K

PDB-8wmd:
Structure of the SARS-CoV-2 EG.5.1 spike glycoprotein (closed-2 state)
Method: single particle / : Nomai T, Anraku Y, Kita S, Hashiguchi T, Maenaka K

PDB-8wmf:
Structure of the SARS-CoV-2 EG.5.1 spike glycoprotein (closed-1 state)
Method: single particle / : Nomai T, Anraku Y, Kita S, Hashiguchi T, Maenaka K

EMDB-29936:
CRYO-EM STRUCTURE OF IMPORTIN ALPHA1/BETA HETERODIMER
Method: single particle / : Ko Y, Cingolani G

PDB-8gcn:
CRYO-EM STRUCTURE OF IMPORTIN ALPHA1/BETA HETERODIMER
Method: single particle / : Ko Y, Cingolani G

EMDB-29858:
Hepatitis B virus capsid bound to importin alpha1
Method: single particle / : Yang R, Cingolani G

PDB-8g8y:
Hepatitis B virus capsid bound to importin alpha1
Method: single particle / : Yang R, Cingolani G

EMDB-29756:
Empty capsid of Hepatitis B virus
Method: single particle / : Yang R, Cingolani G

EMDB-29785:
Hepatitis B virus capsid bound to importin alpha1/beta heterodimer
Method: single particle / : Yang R, Cingolani G

PDB-8g5v:
Empty capsid of Hepatitis B virus
Method: single particle / : Yang R, Cingolani G

PDB-8g6v:
Hepatitis B virus capsid bound to importin alpha1/beta heterodimer
Method: single particle / : Yang R, Cingolani G

EMDB-29675:
A Vibrio cholerae viral satellite enables efficient horizontal transfer by using an external scaffold to assemble hijacked coat proteins into small capsids
Method: single particle / : Subramanian S, Boyd CM, Seed KD, Parent KN

PDB-8g1r:
A Vibrio cholerae viral satellite enables efficient horizontal transfer by using an external scaffold to assemble hijacked coat proteins into small capsids
Method: single particle / : Subramanian S, Boyd CM, Seed KD, Parent KN

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more