[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 25 items for (author: khan & lf)

EMDB-74113:
Competition for different elements of the nucleosome acidic patch yields distinct functional outcomes. VHH 1B2
Method: single particle / : Chakraborty U, Saccone EC, Becerra GC, Khan LF, Arslanovic N, Aguilar R, Gloor SL, Hunt SR, Folkwein HJ, Husby NL, Maier KE, Marunde MR, Schomburg NK, Vaidya A, Cowles MW, Venters BJ, Kassavetis G, Sun ZW, Kadonaga JT, Armache JP, Keogh MC, Tyler JK

EMDB-74114:
Competition for different elements of the nucleosome acidic patch yields distinct functional outcomes. VHH 1G1
Method: single particle / : Chakraborty U, Saccone EC, Becerra GC, Khan LF, Arslanovic N, Aguilar R, Gloor SL, Hunt SR, Folkwein HJ, Husby NL, Maier KE, Marunde MR, Schomburg NK, Vaidya A, Cowles MW, Venters BJ, Kassavetis G, Sun ZW, Kadonaga JT, Armache JP, Keogh MC, Tyler JK

EMDB-46892:
Structure of SARS-CoV-2 spike in complex with antibody Fab COVIC-154
Method: single particle / : Yu X, Saphire EO

PDB-9dhy:
Structure of SARS-CoV-2 spike in complex with antibody Fab COVIC-154
Method: single particle / : Yu X, Saphire EO

EMDB-22683:
Cryo-EM structure of a chromatosome containing human linker histone H1.0
Method: single particle / : Zhou BR, Bai Y

EMDB-22684:
Cryo-EM structure of a chromatosome containing human linker histone H1.4
Method: single particle / : Zhou BR, Bai Y

EMDB-22685:
Cryo-EM structure of a chromatosome containing human linker histone H1.10
Method: single particle / : Zhou BR, Bai Y

EMDB-22686:
Cryo-EM structure of 197bp nucleosome aided by scFv
Method: single particle / : Zhou BR, Bai Y

EMDB-22687:
Cryo-EM structure of a chromatosome containing chimeric linker histone gH1.10-ncH1.4
Method: single particle / : Zhou BR, Bai Y

EMDB-22688:
cryo-EM map of di-chromatosome containing H1.4
Method: single particle / : Zhou BR, Bai Y

PDB-7k5x:
Cryo-EM structure of a chromatosome containing human linker histone H1.0
Method: single particle / : Zhou BR, Bai Y

PDB-7k5y:
Cryo-EM structure of a chromatosome containing human linker histone H1.4
Method: single particle / : Zhou BR, Bai Y

PDB-7k60:
Cryo-EM structure of a chromatosome containing human linker histone H1.10
Method: single particle / : Zhou BR, Bai Y

PDB-7k61:
Cryo-EM structure of 197bp nucleosome aided by scFv
Method: single particle / : Zhou BR, Bai Y

PDB-7k63:
Cryo-EM structure of a chromatosome containing chimeric linker histone gH1.10-ncH1.4
Method: single particle / : Zhou BR, Bai Y

EMDB-3103:
entire human nuclear pore complex
Method: subtomogram averaging / : von Appen A, Kosinski J, Sparks L, Ori A, DiGuilio A, Vollmer B, Mackmull M, Banterle N, Parca L, Kastritis P, Buczak K, Mosalaganti S, Hagen W, Andres-Pons A, Lemke EA, Bork P, Antonin W, Glavy JS, Bui KH, Beck M

EMDB-3104:
The human Nuclear Pore Complex with nucleoporin 358 knockdown
Method: subtomogram averaging / : von Appen A, Kosinski J, Sparks L, Ori A, DiGuilio A, Vollmer B, Mackmull M, Banterle N, Parca L, Kastritis P, Buczak K, Mosalaganti S, Hagen W, Andres-Pons A, Lemke EA, Bork P, Antonin W, Glavy JS, Bui KH, Beck M

EMDB-3105:
segment of the cytoplasmic ring of the human nuclear pore complex
Method: subtomogram averaging / : von Appen A, Kosinski J, Sparks L, Ori A, DiGuilio A, Vollmer B, Mackmull M, Banterle N, Parca L, Kastritis P, Buczak K, Mosalaganti S, Hagen W, Andres-Pons A, Lemke EA, Bork P, Antonin W, Glavy JS, Bui KH, Beck M

EMDB-3106:
segment of the inner ring of the human nuclear pore complex
Method: subtomogram averaging / : von Appen A, Kosinski J, Sparks L, Ori A, DiGuilio A, Vollmer B, Mackmull M, Banterle N, Parca L, Kastritis P, Buczak K, Mosalaganti S, Hagen W, Andres-Pons A, Lemke EA, Bork P, Antonin W, Glavy JS, Bui KH, Beck M

EMDB-3107:
segment of the nuclear ring of the human nuclear pore complex
Method: subtomogram averaging / : von Appen A, Kosinski J, Sparks L, Ori A, DiGuilio A, Vollmer B, Mackmull M, Banterle N, Parca L, Kastritis P, Buczak K, Mosalaganti S, Hagen W, Andres-Pons A, Lemke EA, Bork P, Antonin W, Glavy JS, Bui KH, Beck M

PDB-5a9q:
Human nuclear pore complex
Method: electron tomography / : von Appen A, Kosinski J, Sparks L, Ori A, DiGuilio A, Vollmer B, Mackmull M, Banterle N, Parca L, Kastritis P, Buczak K, Mosalaganti S, Hagen W, Andres-Pons A, Lemke EA, Bork P, Antonin W, Glavy JS, Bui KH, Beck M

PDB-3ixv:
Scorpion Hemocyanin resting state pseudo atomic model built based on cryo-EM density map
Method: single particle / : Cong Y, Zhang Q, Woolford D, Schweikardt T, Khant H, Ludtke S, Chiu W, Decker H

PDB-3ixw:
Scorpion Hemocyanin activated state pseudo atomic model built based on cryo-EM density map
Method: single particle / : Cong Y, Zhang Q, Woolford D, Schweikardt T, Khant H, Ludtke S, Chiu W, Decker H

EMDB-5100:
24-meric Scorpion Hemocyanin Resting State cryo-EM Density Map at 6.8 Angstrom Resolution
Method: single particle / : Cong Y, Zhang Q, Woolford D, Schweikardt T, Khant H, Ludtke S, Chiu W, Decker H

EMDB-5101:
24-meric Scorpion Hemocyanin Activated State cryo-EM Density Map at 8 Angstrom Resolution
Method: single particle / : Cong Y, Zhang Q, Woolford D, Schweikardt T, Khant H, Ludtke S, Chiu W, Decker H

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more