[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 8,190 items for (author: ke & ak)

EMDB-75506:
Cryo-EM map of Ascl1-E12a in complex with NRCAM nucleosome without scFv
Method: single particle / : Zhou BR, Bai Y

EMDB-73364:
Factor XIa in complex with Fab fragment of REGN7508-Cat
Method: single particle / : Saotome K, Franklin MC

EMDB-73374:
Factor XIa in complex with Fab fragment of REGN9933-A2
Method: single particle / : Saotome K, Franklin MC

PDB-9yrb:
Factor XIa in complex with Fab fragment of REGN7508-Cat
Method: single particle / : Saotome K, Franklin MC

PDB-9yrq:
Factor XIa in complex with Fab fragment of REGN9933-A2
Method: single particle / : Saotome K, Franklin MC

EMDB-76733:
SARS-CoV-2 RNA-dependent RNA polymerase in complex with 4'-FlA nucleotide analogue
Method: single particle / : Park S, Gharpure A, Ward AB

PDB-12sn:
SARS-CoV-2 RNA-dependent RNA polymerase in complex with 4'-FlA nucleotide analogue
Method: single particle / : Park S, Gharpure A, Ward AB

EMDB-71654:
EV-D68 in complex with G12 VHH
Method: single particle / : Klose T, Kuhn RJ

PDB-9pi7:
EV-D68 in complex with G12 VHH
Method: single particle / : Klose T, Kuhn RJ, Center for Structural Biology of Infectious Diseases (CSBID)

EMDB-72052:
Consensus map for Babesia divergens ribosome structure by single-particle cryo-EM (3D class3, E-site tRNA)
Method: single particle / : Gutierrez-Vargas C, Leger-Abraham M

EMDB-72055:
Multi-body LSU map for Babesia divergens ribosome structure by single-particle cryo-EM (3D class3, E-site tRNA)
Method: single particle / : Gutierrez-Vargas C, Leger-Abraham M

EMDB-72069:
Multi-body SSU body map for Babesia divergens ribosome structure by single-particle cryo-EM (3D class3, E-site tRNA)
Method: single particle / : Gutierrez-vargas C, Leger-Abraham M

EMDB-72070:
Multi-body SSU head map for Babesia divergens ribosome structure by single-particle cryo-EM (3D class3, E-site tRNA)
Method: single particle / : Gutierrez-Vargas C, Leger-Abraham M

EMDB-41497:
Structure of the H-lobe of human MED12
Method: single particle / : Chen SF, Chao TC, Kim HJ, Tang HC, Khadka S, Li T, Murakami K, Boyer TG, Tsai KL

EMDB-41500:
Structure of the kinase and central lobes of human CDK8 kinase module
Method: single particle / : Chen SF, Chao TC, Kim HJ, Tang HC, Khadka S, Li T, Murakami K, Boyer TG, Tsai KL

EMDB-70890:
C1 symmetry cryoEM structure of the soluble-WRAPed membranous portion of MspA (Mycobacterium smegmatis porin), dimerized along the native interface.
Method: single particle / : Weidle C, Carr KD, Alexis C, Borst AJ

EMDB-72933:
Babesia divergens ribosome structure by single-particle cryo-EM (3D class3, E-site tRNA)
Method: single particle / : Gutierrez-Vargas C, Izhaki-Tavor LS, Leger-Abraham M

EMDB-73574:
Consensus map for Babesia divergens ribosome structure by single-particle cryo-EM (3D class1, A-, P-, and E-site tRNAs and mRNA)
Method: single particle / : Gutierrez-Vargas C, Leger-Abraham M

EMDB-73576:
Multi-body LSU map for Babesia divergens ribosome structure by single-particle cryo-EM (3D class1, A-, P-, and E-site tRNAs and mRNA)
Method: single particle / : Gutierrez-Vargas C, Leger-Abraham M

EMDB-73577:
Multi-body SSU body map for Babesia divergens ribosome structure by single-particle cryo-EM (3D class1, A-, P-, and E-site tRNAs and mRNA)
Method: single particle / : Gutierrez-Vargas C, Leger-Abraham M

EMDB-73581:
Multi-body SSU head map for Babesia divergens ribosome structure by single-particle cryo-EM (3D class1, A-, P-, and E-site tRNAs and mRNA)
Method: single particle / : Gutierrez-Vargas C, Leger-Abraham M

EMDB-73602:
Babesia divergens ribosome structure by single-particle cryo-EM (3D class1, A-, P-, and E-site tRNAs and mRNA)
Method: single particle / : Gutierrez-Vargas C, Izhaki-Tavor LS, Leger-Abraham M

EMDB-54641:
SPACA9 and MNMIP1 bound to the seam of manchette microtubules
Method: single particle / : Judernatz JH, Zhang R, Zeev-Ben-Mordehai T

PDB-9s7g:
SPACA9 and MNMIP1 bound to the seam of manchette microtubules
Method: single particle / : Judernatz JH, Zhang R, Zeev-Ben-Mordehai T

EMDB-65381:
Cryo-EM structure of SecM-arrested 70S ribosome with YheS
Method: single particle / : Iso K, Ando Y, Taguchi H, Nureki O, Chadani Y, Itoh Y

EMDB-66482:
Cryo-EM structure of SecM-arrested 70S ribosome with YheS, the overall refined map
Method: single particle / : Iso K, Ando Y, Taguchi H, Nureki O, Chadani Y, Itoh Y

EMDB-66483:
Cryo-EM structure of SecM-arrested 70S ribosome with YheS, local-masked refined map on LSU.
Method: single particle / : Iso K, Ando Y, Taguchi H, Nureki O, Chadani Y, Itoh Y

EMDB-66484:
Cryo-EM structure of SecM-arrested 70S ribosome with YheS, local-masked refined map on the SSU body.
Method: single particle / : Iso K, Ando Y, Taguchi H, Nureki O, Chadani Y, Itoh Y

EMDB-66485:
Cryo-EM structure of SecM-arrested 70S ribosome with YheS, local-masked refined map on the SSU head.
Method: single particle / : Iso K, Ando Y, Taguchi H, Nureki O, Chadani Y, Itoh Y

EMDB-66486:
Cryo-EM structure of SecM-arrested 70S ribosome with YheS, local-masked refined map on YheS and L1 stalk.
Method: single particle / : Iso K, Ando Y, Taguchi H, Nureki O, Chadani Y, Itoh Y

EMDB-67339:
Cryo-EM structure of SecM-arrested 70S ribosome (short SecM)
Method: single particle / : Iso K, Ando Y, Taguchi H, Nureki O, Chadani Y, Itoh Y

PDB-9vvi:
Cryo-EM structure of SecM-arrested 70S ribosome with YheS
Method: single particle / : Iso K, Ando Y, Taguchi H, Nureki O, Chadani Y, Itoh Y

PDB-9xwo:
Cryo-EM structure of SecM-arrested 70S ribosome (short SecM)
Method: single particle / : Iso K, Ando Y, Taguchi H, Nureki O, Chadani Y, Itoh Y

EMDB-63852:
Cryo-EM Structure of Human ACE2 Complexed with RacCS20637 RBD
Method: single particle / : Matsumoto K, Akasaka H, Shihoya W, Nureki O

PDB-9u4o:
Cryo-EM Structure of Human ACE2 Complexed with RacCS20637 RBD
Method: single particle / : Matsumoto K, Akasaka H, Shihoya W, Nureki O

EMDB-67612:
Cryo-EM structure of monomeric Cu/Zn-superoxide dismutase from dog (Canis familiaris) complexed with 19A9 triabody in the closed conformation
Method: single particle / : Shino Y, Furukawa Y, Muraki N

EMDB-67613:
Cryo-EM structure of monomeric Cu/Zn-superoxide dismutase from dog (Canis familiaris) complexed with 19A9 triabody in the open conformation
Method: single particle / : Shino Y, Furukawa Y, Muraki N

PDB-21en:
Cryo-EM structure of monomeric Cu/Zn-superoxide dismutase from dog (Canis familiaris) complexed with 19A9 triabody in the closed conformation
Method: single particle / : Shino Y, Furukawa Y, Muraki N

PDB-21eo:
Cryo-EM structure of monomeric Cu/Zn-superoxide dismutase from dog (Canis familiaris) complexed with 19A9 triabody in the open conformation
Method: single particle / : Shino Y, Furukawa Y, Muraki N

EMDB-75431:
The cryoEM structure of T10 type2 nanofiber
Method: helical / : Zhang H, Yang Y

EMDB-75434:
The CryoEM structure of T12 type1 nanofiber
Method: helical / : Zhang H, Yang Y

EMDB-75435:
The CryoEM structure of T12 type2 nanofiber
Method: helical / : Zhang H, Yang Y

EMDB-71655:
EV-D68 in complex with G12 Fc
Method: single particle / : Klose T, Kuhn RJ

PDB-9pi8:
EV-D68 in complex with G12 Fc
Method: single particle / : Klose T, Kuhn RJ, Center for Structural Biology of Infectious Diseases (CSBID)

EMDB-73305:
Cryo-EM structure of the EBV 1/2 DS bound to the EBNA1 DBD, TRF2, and Rap1
Method: single particle / : Sustek S, Messick TE, Murakami K, Lieberman PM

EMDB-71994:
Cryo-EM structure of NapA, the periplasmic nitrate reductase from Campylobacter jejuni
Method: single particle / : Thach T, Subramanian R

PDB-9pxt:
Cryo-EM structure of NapA, the periplasmic nitrate reductase from Campylobacter jejuni
Method: single particle / : Thach T, Subramanian R

EMDB-65360:
Structure of human proteasome ATPase-CP intermediate assembles with 15min rapaprotin addition
Method: single particle / : Wang WL, Yin DY, Mao YD

EMDB-65361:
Structure of human proteasome ATPase-CP intermediate assembles with 90min rapaprotin addition
Method: single particle / : Wang WL, Yin DY, Mao YD

EMDB-65362:
Structure of human proteasome ATPase-CP intermediate assembles with 90min rapaprotin addition
Method: single particle / : Wang WL, Yin DY, Mao YD

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more