[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 121 items for (author: kayama & y)

EMDB-62028:
Cryo-EM structure of TMPRSS2 in complex with Fab fragments of 752 mAb and 2228 mAb
Method: single particle / : Katsura K, Hisano T, Matsumoto T, Shirouzu M

PDB-9k3t:
Cryo-EM structure of TMPRSS2 in complex with Fab fragments of 752 mAb and 2228 mAb
Method: single particle / : Katsura K, Hisano T, Matsumoto T, Shirouzu M

EMDB-61579:
Cryo-EM structure of chalcone synthase (CHS) from Physcomitrella patens in the presence of CHIL
Method: single particle / : Sato K, Yokoyama T, Tanaka Y, Imaizumi R, Yasuda A, Yanai T, Yamashita S, Waki T, Tsunashima M, Nakayama T

PDB-9jl6:
Cryo-EM structure of chalcone synthase (CHS) from Physcomitrella patens in the presence of CHIL
Method: single particle / : Sato K, Yokoyama T, Tanaka Y, Imaizumi R, Yasuda A, Yanai T, Yamashita S, Waki T, Tsunashima M, Nakayama T

EMDB-47547:
Cryo-EM structure of mechanosensitive channel YnaI in DOPC nanodiscs
Method: single particle / : Hiotis G, Will N, Walz T

EMDB-47548:
Cryo-EM structure of mechanosensitive channel YnaI in DOPC nanodiscs treated with beta-cyclodextrin
Method: single particle / : Hiotis G, Will N, Walz T

EMDB-47549:
Cryo-EM structure of mechanosensitive channel YnaI in DOPC nanodiscs treated with lysophosphatidylcholine
Method: single particle / : Hiotis G, Will N, Walz T

EMDB-47550:
Cryo-EM structure of mechanosensitive channel YnaI A155V mutant in conformation 1
Method: single particle / : Hiotis G, Will N, Walz T

EMDB-47551:
Cryo-EM structure of mechanosensitive channel YnaI A155V mutant in conformation 2
Method: single particle / : Hiotis G, Will N, Walz T

EMDB-47552:
Cryo-EM structure of mechanosensitive channel YnaI in DDPC nanodiscs
Method: single particle / : Hiotis G, Will N, Walz T

EMDB-47553:
Cryo-EM structure of MscS/YnaI chimera in DOPC nanodiscs
Method: single particle / : Hiotis G, Will N, Walz T

PDB-9e62:
Cryo-EM structure of mechanosensitive channel YnaI in DOPC nanodiscs
Method: single particle / : Hiotis G, Will N, Walz T

PDB-9e63:
Cryo-EM structure of mechanosensitive channel YnaI in DOPC nanodiscs treated with beta-cyclodextrin
Method: single particle / : Hiotis G, Will N, Walz T

PDB-9e64:
Cryo-EM structure of mechanosensitive channel YnaI in DOPC nanodiscs treated with lysophosphatidylcholine
Method: single particle / : Hiotis G, Will N, Walz T

PDB-9e65:
Cryo-EM structure of mechanosensitive channel YnaI A155V mutant in conformation 1
Method: single particle / : Hiotis G, Will N, Walz T

PDB-9e66:
Cryo-EM structure of mechanosensitive channel YnaI A155V mutant in conformation 2
Method: single particle / : Hiotis G, Will N, Walz T

PDB-9e67:
Cryo-EM structure of mechanosensitive channel YnaI in DDPC nanodiscs
Method: single particle / : Hiotis G, Will N, Walz T

PDB-9e68:
Cryo-EM structure of MscS/YnaI chimera in DOPC nanodiscs
Method: single particle / : Hiotis G, Will N, Walz T

EMDB-63267:
Tomogram of a Candidatus Flexarchaeum multiprotrusionis strain SC1 cell
Method: electron tomography / : Murata K, Kayama Y, Imachi H

EMDB-63316:
Tomogram of a Candidatus Margulisarchaeum peptidophila strain HC1 cell
Method: electron tomography / : Murata K, Kayama Y, Imachi H

EMDB-63317:
Tomogram of a Candidatus Margulisarchaeum peptidophila strain HC1 cell
Method: electron tomography / : Murata K, Kayama Y, Imachi H

EMDB-63318:
Tomogram of Candidatus Flexarchaeum multiprotrusionis strain SC1 cell
Method: electron tomography / : Murata K, Kayama Y, Imachi H

EMDB-63319:
Tomogram of Candidatus Flexarchaeum multiprotrusionis strain SC1 cell
Method: electron tomography / : Murata K, Kayama Y, Imachi H

EMDB-63320:
Tomogram of a Candidatus Flexarchaeum multiprotrusionis strain SC1 cell
Method: electron tomography / : Murata K, Kayama Y, Imachi H

EMDB-45876:
Consensus olfactory receptor consOR1 bound to L-menthol and in complex with mini-Gs trimeric protein (transmembrane domain)
Method: single particle / : Billesboelle CB, Del Torrent CL, Manglik A

EMDB-45879:
Consensus olfactory receptor consOR2 bound to S-carvone and in complex with mini-Gs trimeric protein (transmembrane domain)
Method: single particle / : Billesboelle CB, Del Torrent CL, Manglik A

EMDB-45881:
Consensus olfactory receptor consOR51 in complex with mini-Gs trimeric protein (transmembrane domain)
Method: single particle / : Billesboelle CB, Del Torrent CL, Manglik A

EMDB-45880:
Consensus olfactory receptor consOR4 bound to 2-methylthiazoline and in complex with mini-Gs trimeric protein (transmembrane domain)
Method: single particle / : Billesboelle CB, Del Torrent CL, Manglik A

EMDB-42786:
Consensus olfactory receptor consOR51 in complex with mini-Gs trimeric protein
Method: single particle / : Billesboelle CB, Del Torrent CL, Manglik A

EMDB-42789:
Consensus olfactory receptor consOR1 bound to L-menthol and in complex with mini-Gs trimeric protein
Method: single particle / : Billesboelle CB, Del Torrent CL, Manglik A

EMDB-42791:
Consensus olfactory receptor consOR2 bound to S-carvone and in complex with mini-Gs trimeric protein
Method: single particle / : Billesboelle CB, Del Torrent CL, Manglik A

EMDB-42817:
Consensus olfactory receptor consOR4 bound to 2-methylthiazoline and in complex with mini-Gs trimeric protein
Method: single particle / : Billesboelle CB, Del Torrent CL, Manglik A

PDB-8uxv:
Consensus olfactory receptor consOR51 in complex with mini-Gs trimeric protein
Method: single particle / : Billesboelle CB, Del Torrent CL, Manglik A

PDB-8uxy:
Consensus olfactory receptor consOR1 bound to L-menthol and in complex with mini-Gs trimeric protein
Method: single particle / : Billesboelle CB, Del Torrent CL, Manglik A

PDB-8uy0:
Consensus olfactory receptor consOR2 bound to S-carvone and in complex with mini-Gs trimeric protein
Method: single particle / : Billesboelle CB, Del Torrent CL, Manglik A

PDB-8uyq:
Consensus olfactory receptor consOR4 bound to 2-methylthiazoline and in complex with mini-Gs trimeric protein
Method: single particle / : Billesboelle CB, Del Torrent CL, Manglik A

EMDB-38453:
Structure of the SARS-CoV-2 EG.5.1 spike glycoprotein in complex with ACE2 (1-up state)
Method: single particle / : Nomai T, Anraku Y, Kita S, Hashiguchi T, Maenaka K

EMDB-38454:
Structure of the SARS-CoV-2 EG.5.1 spike RBD in complex with ACE2
Method: single particle / : Nomai T, Anraku Y, Kita S, Hashiguchi T, Maenaka K

PDB-8xlm:
Structure of the SARS-CoV-2 EG.5.1 spike glycoprotein in complex with ACE2 (1-up state)
Method: single particle / : Nomai T, Anraku Y, Kita S, Hashiguchi T, Maenaka K

PDB-8xln:
Structure of the SARS-CoV-2 EG.5.1 spike RBD in complex with ACE2
Method: single particle / : Nomai T, Anraku Y, Kita S, Hashiguchi T, Maenaka K

EMDB-37648:
SARS-CoV-2 EG.5.1 spike glycoprotein (1-up state)
Method: single particle / : Nomai T, Anraku Y, Kita S, Hashiguchi T, Maenaka K

EMDB-37650:
SARS-CoV-2 EG.5.1 spike glycoprotein (closed-2 state)
Method: single particle / : Nomai T, Anraku Y, Kita S, Hashiguchi T, Maenaka K

EMDB-37651:
SARS-CoV-2 EG.5.1 spike glycoprotein (closed-1 state)
Method: single particle / : Nomai T, Anraku Y, Kita S, Hashiguchi T, Maenaka K

PDB-8wmd:
Structure of the SARS-CoV-2 EG.5.1 spike glycoprotein (closed-2 state)
Method: single particle / : Nomai T, Anraku Y, Kita S, Hashiguchi T, Maenaka K

PDB-8wmf:
Structure of the SARS-CoV-2 EG.5.1 spike glycoprotein (closed-1 state)
Method: single particle / : Nomai T, Anraku Y, Kita S, Hashiguchi T, Maenaka K

EMDB-36724:
Structure of the SARS-CoV-2 XBB.1.5 spike glycoprotein (closed state 1)
Method: single particle / : Yajima H, Anraku Y, Kita S, Kimura K, Sasaki J, Sasaki-Tabata K, Maenaka K, Hashiguchi T

EMDB-36726:
Structure of the SARS-CoV-2 XBB.1.5 spike glycoprotein (closed state 2)
Method: single particle / : Yajima H, Anraku Y, Kita S, Kimura K, Sasaki J, Sasaki-Tabata K, Maenaka K, Hashiguchi T

EMDB-36727:
Structure of SARS-CoV-2 XBB.1.5 spike glycoprotein in complex with ACE2 (1-up state)
Method: single particle / : Yajima H, Anraku Y, Kita S, Kimura K, Sasaki J, Sasaki-Tabata K, Maenaka K, Hashiguchi T

EMDB-36728:
Structure of SARS-CoV-2 XBB.1.5 spike glycoprotein in complex with ACE2 (2-up state)
Method: single particle / : Yajima H, Anraku Y, Kita S, Kimura K, Sasaki J, Sasaki-Tabata K, Maenaka K, Hashiguchi T

EMDB-36729:
Structure of SARS-CoV-2 XBB.1.5 spike RBD in complex with ACE2
Method: single particle / : Yajima H, Anraku Y, Kita S, Kimura K, Sasaki J, Sasaki-Tabata K, Maenaka K, Hashiguchi T

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more