[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 42 items for (author: jenkyn-bedford & m)

EMDB-17198:
Cryo-EM density map of the C. elegans complex CMG helicase/TIM-1/TIPN-1/DNSN-1 dimer on fork DNA (prior to enrichment of particles containing TIM-1/TIPN-1)
Method: single particle / : Jenkyn-Bedford M, Yeeles JTP

EMDB-17199:
Cryo-EM density map of the C. elegans complex CMG helicase/TIM-1/TIPN-1/DNSN-1 dimer on fork DNA (Multi-body Refinement DNSN-1 homodimer)
Method: single particle / : Jenkyn-Bedford M, Yeeles JTP

EMDB-17200:
Cryo-EM density map of the C. elegans complex CMG helicase/TIM-1/TIPN-1/DNSN-1 dimer on fork DNA (Multi-body Refinement GINS/CDC-45/DNSN-1 N-terminus)
Method: single particle / : Jenkyn-Bedford M, Yeeles JTP

EMDB-17201:
Cryo-EM density map of the C. elegans complex CMG helicase/TIM-1/TIPN-1/DNSN-1 dimer on fork DNA (Multi-body Refinement MCM-2-7 AAA+/ssDNA)
Method: single particle / : Jenkyn-Bedford M, Yeeles JTP

EMDB-17202:
Cryo-EM density map of the C. elegans complex CMG helicase/TIM-1/TIPN-1/DNSN-1 dimer on fork DNA (Multi-body Refinement MCM-2-7 NTDs)
Method: single particle / : Jenkyn-Bedford M, Yeeles JTP

EMDB-17203:
Cryo-EM density map of the C. elegans complex CMG helicase/TIM-1/TIPN-1/DNSN-1 dimer on fork DNA (Multi-body Refinement TIM-1/TIPN-1/MCM-2-7 NTD/dsDNA)
Method: single particle / : Jenkyn-Bedford M, Yeeles JTP

EMDB-17204:
Cryo-EM structure of CMG helicase bound to TIM-1/TIPN-1 and homodimeric DNSN-1 on fork DNA (Caenorhabditis elegans)
Method: single particle / : Jenkyn-Bedford M, Yeeles JTP, Labib KPM

PDB-8ouw:
Cryo-EM structure of CMG helicase bound to TIM-1/TIPN-1 and homodimeric DNSN-1 on fork DNA (Caenorhabditis elegans)
Method: single particle / : Jenkyn-Bedford M, Yeeles JTP, Labib KPM

EMDB-13495:
Cryo-EM reconstruction of the S. cerevisiae replisome-SCF(Dia2) complex, bound to dsDNA (conformation I) - full complex (unsharpened map)
Method: single particle / : Jenkyn-Bedford M, Yeeles JTP, Deegan TD

EMDB-13496:
Cryo-EM reconstruction of the S. cerevisiae replisome-SCF(Dia2) complex, bound to dsDNA (conformation I) - full complex (sharpened map)
Method: single particle / : Jenkyn-Bedford M, Yeeles JTP, Deegan TD

EMDB-13497:
Cryo-EM reconstruction of the S. cerevisiae replisome-SCF(Dia2) complex, bound to dsDNA (conformation I) - MCM N-tier region
Method: single particle / : Jenkyn-Bedford M, Yeeles JTP, Deegan TD

EMDB-13498:
Cryo-EM reconstruction of the S. cerevisiae replisome-SCF(Dia2) complex, bound to dsDNA (conformation I) - MCM C-tier region
Method: single particle / : Jenkyn-Bedford M, Yeeles JTP, Deegan TD

EMDB-13500:
Cryo-EM reconstruction of the S. cerevisiae replisome-SCF(Dia2) complex, bound to dsDNA (conformation II) - full complex (unsharpened map)
Method: single particle / : Jenkyn-Bedford M, Yeeles JTP, Deegan TD

EMDB-13512:
Cryo-EM reconstruction of the S. cerevisiae replisome-SCF(Dia2) complex, bound to dsDNA (conformation II) - full complex (sharpened map)
Method: single particle / : Jenkyn-Bedford M, Yeeles JTP, Deegan TD

EMDB-13513:
Cryo-EM reconstruction of the S. cerevisiae replisome-SCF(Dia2) complex, bound to dsDNA (conformation II) - MCM N-tier region
Method: single particle / : Jenkyn-Bedford M, Yeeles JTP, Deegan TD

EMDB-13514:
Cryo-EM reconstruction of the S. cerevisiae replisome-SCF(Dia2) complex, bound to dsDNA (conformation II) - MCM C-tier region
Method: single particle / : Jenkyn-Bedford M, Yeeles JTP, Deegan TD

EMDB-13515:
Cryo-EM reconstruction of the S. cerevisiae replisome-SCF(Dia2) complex, bound to dsDNA - region encompassing Dia2-Skp1
Method: single particle / : Jenkyn-Bedford M, Yeeles JTP, Deegan TD

EMDB-13516:
Cryo-EM reconstruction of the S. cerevisiae replisome-SCF(Dia2) complex, bound to dsDNA - region encompassing Cdc45-GINS-Ctf4-Dpb2N
Method: single particle / : Jenkyn-Bedford M, Yeeles JTP, Deegan TD

EMDB-13517:
Cryo-EM reconstruction of the S. cerevisiae replisome-SCF(Dia2) complex, bound to dsDNA - region encompassing Pol2-Dpb2-Mcm5 WH
Method: single particle / : Jenkyn-Bedford M, Yeeles JTP, Deegan TD

EMDB-13518:
Cryo-EM reconstruction of the S. cerevisiae replisome-SCF(Dia2) complex, bound to dsDNA, enriched for particles containing Csm3-Tof1
Method: single particle / : Jenkyn-Bedford M, Yeeles JTP, Deegan TD

EMDB-13519:
Cryo-EM reconstruction of the full S. cerevisiae replisome-SCF(Dia2) complex in the absence of DNA (unsharpened map)
Method: single particle / : Jenkyn-Bedford M, Yeeles JTP, Deegan TD

EMDB-13540:
Cryo-EM reconstruction of the S. cerevisiae replisome-SCF(Dia2) complex, in the absence of DNA - region encompassing MCM N-tier-Cdc45-GINS-Ctf4-Dia2
Method: single particle / : Jenkyn-Bedford M, Yeeles JTP, Deegan TD

EMDB-13490:
ELONGIN-BC/LRR1/CUL2 multibody refinement
Method: single particle / : Jones MJ, Jenkyn-Bedford M, Yeeles JTP, Deegan TD

EMDB-13491:
AND-1/CDC45/GINS multibody refinement
Method: single particle / : Jones MJ, Jenkyn-Bedford M, Yeeles JTP, Deegan TD

EMDB-13492:
Multibody refinement CUL2/RXB1
Method: single particle / : Jones MJ, Jenkyn-Bedford M, Yeeles JTP, Deegan TD

EMDB-13494:
H. sapiens replisome-CUL2/LRR1 complex
Method: single particle / : Jones MJ, Yeeles JTP

EMDB-13534:
Cryo-EM map of the core human replisome on a DNA substrate lacking a 5'-flap
Method: single particle / : Jones MJ, Yeeles JTP, Jenkyn-Bedford M, Deegan TD

EMDB-13537:
S. cerevisiae replisome-SCF(Dia2) complex bound to double-stranded DNA (conformation I)
Method: single particle / : Jenkyn-Bedford M, Yeeles JTP, Deegan TD

EMDB-13539:
S. cerevisiae replisome-SCF(Dia2) complex bound to double-stranded DNA (conformation II)
Method: single particle / : Jenkyn-Bedford M, Yeeles JTP, Deegan TD

PDB-7plo:
H. sapiens replisome-CUL2/LRR1 complex
Method: single particle / : Jones MJ, Yeeles JTP, Deegan TD, Jenkyn-Bedford M

PDB-7pmk:
S. cerevisiae replisome-SCF(Dia2) complex bound to double-stranded DNA (conformation I)
Method: single particle / : Jenkyn-Bedford M, Yeeles JTP, Deegan TD

PDB-7pmn:
S. cerevisiae replisome-SCF(Dia2) complex bound to double-stranded DNA (conformation II)
Method: single particle / : Jenkyn-Bedford M, Yeeles JTP, Deegan TD

EMDB-10227:
Cryo-EM structure of the CMG Fork Protection Complex at a replication fork - Conformation 1
Method: single particle / : Baretic D, Jenkyn-Bedford M

EMDB-10230:
Cryo-EM Structure of the Fork Protection Complex Bound to CMG at a Replication Fork - conformation 2 MCM CTD:ssDNA
Method: single particle / : Baretic D, Jenkyn-Bedford M

EMDB-10507:
Tof1-Body_Csm3_dsDNA_Mcm4,6,7-N-tier_MultiBody
Method: single particle / : Baretic D, Jenkyn-Bedford M

EMDB-10508:
Tof1-Head_Mcm2,3,5-N-tier_MultiBody
Method: single particle / : Baretic D, Jenkyn-Bedford M

EMDB-10509:
Conformation1_Ctf4-GINS-Cdc45_MultiBody
Method: single particle / : Baretic D, Jenkyn-Bedford M

EMDB-10510:
Conformation1_Mcm2,3,5,6_MultiBody
Method: single particle / : Baretic D, Jenkyn-Bedford M

EMDB-10511:
Conformation1_Mcm4,7_MultiBody
Method: single particle / : Baretic D, Jenkyn-Bedford M

EMDB-10730:
Conformation2_Mcm2,5-ssDNA_MultiBody
Method: single particle / : Baretic D, Jenkyn-Bedford M

PDB-6skl:
Cryo-EM structure of the CMG Fork Protection Complex at a replication fork - Conformation 1
Method: single particle / : Yeeles J, Baretic D, Jenkyn-Bedford M

PDB-6sko:
Cryo-EM Structure of the Fork Protection Complex Bound to CMG at a Replication Fork - conformation 2 MCM CTD:ssDNA
Method: single particle / : Yeeles J, Baretic D, Jenkyn-Bedford M

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more