[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 1,381 items for (author: huo & y)

EMDB-43813:
VIR-7229 Fab fragment bound the SARS-CoV-2 BA.2.86 spike trimer (local refinement of the BA 2.86 RBD/VIR-7229 VHVL)
Method: single particle / : Park YJ, Tortorici MA, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-43842:
VIR-7229 Fab fragment bound the BA.2.86 spike trimer (global refinement)
Method: single particle / : Tortorici MA, Park YJ, Veelser D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-9asd:
VIR-7229 Fab fragment bound the SARS-CoV-2 BA.2.86 spike trimer (local refinement of the BA 2.86 RBD/VIR-7229 VHVL)
Method: single particle / : Park YJ, Tortorici MA, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-9au2:
VIR-7229 Fab fragment bound the BA.2.86 spike trimer (global refinement)
Method: single particle / : Tortorici MA, Park YJ, Veelser D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-39027:
Cryo-EM structure of the monomeric SPARSA gRNA-ssDNA complex
Method: single particle / : Zhang JT, Cui N, Wei XY, Jia N

EMDB-39028:
Cryo-EM structure of the tetrameric SPARSA gRNA-ssDNA complex
Method: single particle / : Zhang JT, Cui N, Wei XY, Jia N

EMDB-39030:
Cryo-EM structure of the tetrameric SPARSA gRNA-ssDNA-NAD+ complex
Method: single particle / : Zhang JT, Cui N, Wei XY, Jia N

EMDB-39031:
Cryo-EM structure of the monomeric SPARSA complex
Method: single particle / : Zhang JT, Cui N, Wei XY, Jia N

PDB-8y7z:
Cryo-EM structure of the monomeric SPARSA gRNA-ssDNA complex
Method: single particle / : Zhang JT, Cui N, Wei XY, Jia N

PDB-8y80:
Cryo-EM structure of the tetrameric SPARSA gRNA-ssDNA complex
Method: single particle / : Zhang JT, Cui N, Wei XY, Jia N

PDB-8y82:
Cryo-EM structure of the tetrameric SPARSA gRNA-ssDNA-NAD+ complex
Method: single particle / : Zhang JT, Cui N, Wei XY, Jia N

EMDB-38933:
Cryo-EM structure of E.coli spermidine transporter PotABC
Method: single particle / : Qiao Z, Gao YG

EMDB-38934:
Cryo-EM structure of E.coli spermidine transporter PotABC with spermidine
Method: single particle / : Qiao Z, Gao YG

EMDB-38935:
Cryo-EM structure of E.coli spermidine transporter PotD-PotABC in pre-translocation state
Method: single particle / : Qiao Z, Gao YG

EMDB-38936:
Cryo-EM structure of E.coli spermidine transporter PotD-PotABC in translocation intermidiate state
Method: single particle / : Qiao Z, Gao YG

EMDB-60536:
Cryo-EM structure of E.coli spermidine transporter PotABC in nanodisc
Method: single particle / : Qiao Z, Gao YG

PDB-8y5f:
Cryo-EM structure of E.coli spermidine transporter PotABC
Method: single particle / : Qiao Z, Gao YG

PDB-8y5g:
Cryo-EM structure of E.coli spermidine transporter PotABC with spermidine
Method: single particle / : Qiao Z, Gao YG

PDB-8y5h:
Cryo-EM structure of E.coli spermidine transporter PotD-PotABC in pre-translocation state
Method: single particle / : Qiao Z, Gao YG

PDB-8y5i:
Cryo-EM structure of E.coli spermidine transporter PotD-PotABC in translocation intermidiate state
Method: single particle / : Qiao Z, Gao YG

PDB-8zx1:
Cryo-EM structure of E.coli spermidine transporter PotABC in nanodisc
Method: single particle / : Qiao Z, Gao YG

EMDB-39360:
Cryo-EM structure of P97-VCPIP1 complex
Method: single particle / : Liu Y, Lu P, Gao H, Li F

PDB-8yka:
Cryo-EM structure of P97-VCPIP1 complex
Method: single particle / : Liu Y, Lu P, Gao H, Li F

EMDB-39621:
Cryo-EM structure of the retatrutide-bound human GLP-1R-Gs complex
Method: single particle / : Li WZ, Zhou QT, Cong ZT, Yuan QN, Li WX, Zhao FH, Xu HE, Zhao LH, Yang DH, Wang MW, Wang M, Chen LN, Xu PY, Chang RL, Feng WB, Xia T, Zhang Y, Wu BL

EMDB-39622:
Cryo-EM structure of the retatrutide-bound human GIPR-Gs complex
Method: single particle / : Li WZ, Zhou QT, Cong ZT, Yuan QN, Li WX, Zhao FH, Xu HE, Zhao LH, Yang DH, Wang MW

PDB-8yw3:
Cryo-EM structure of the retatrutide-bound human GLP-1R-Gs complex
Method: single particle / : Li WZ, Zhou QT, Cong ZT, Yuan QN, Li WX, Zhao FH, Xu HE, Zhao LH, Yang DH, Wang MW

PDB-8yw4:
Cryo-EM structure of the retatrutide-bound human GIPR-Gs complex
Method: single particle / : Li WZ, Zhou QT, Cong ZT, Yuan QN, Li WX, Zhao FH, Xu HE, Zhao LH, Yang DH, Wang MW

EMDB-38914:
BA.2.86 S-trimer in complex with Nab XG2v046
Method: single particle / : Zhu Q, Liu P

PDB-8y4a:
BA.2.86 S-trimer in complex with Nab XG2v046
Method: single particle / : Zhu Q, Liu P

EMDB-36238:
Cryo-EM structure of mClC-3 with AMP
Method: single particle / : Wan YZQ, Yang F

PDB-8jgl:
Cryo-EM structure of mClC-3 with AMP
Method: single particle / : Wan YZQ, Yang F

EMDB-38824:
Cryo-EM structure of anti-phage defense associated DSR2 tetramer (H171A)
Method: single particle / : Li FX, Shi ZB, Wang RW, Xu Q, Yang R, Wu ZX

EMDB-38867:
The Cryo-EM map of anti-phage defense associated DSR2 tetramer (H171A)
Method: single particle / : Li FX, Shi ZB, Wang RW, Xu Q, Yang R, Wu ZX

EMDB-38868:
Local refinement of anti-phage defense associated DSR2 tetramer (H171A)
Method: single particle / : Li FX, Shi ZB, Wang RW, Xu Q, Yang R, Wu ZX

EMDB-38869:
Local refinement of anti-phage defense associated DSR2 tetramer (H171A)
Method: single particle / : Li FX, Shi ZB, Wang RW, Xu Q, Yang R, Wu ZX

EMDB-38870:
The Cryo-EM map of anti-phage defense associated DSR2 (H171A) before local refinement (map2)
Method: single particle / : Li FX, Shi ZB, Wang RW, Xu Q, Yang R, Wu ZX

EMDB-38871:
Local refinement of anti-phage defense associated DSR2 (H171A) (map2)
Method: single particle / : Li FX, Shi ZB, Wang RW, Xu Q, Yang R, Wu ZX

EMDB-38872:
Cryo-EM structure of anti-phage defense associated DSR2 (H171A) (map2)
Method: single particle / : Wang RW, Xu Q, Wu ZX, Li JL, Shi ZB, Li FX

EMDB-38887:
The Cryo-EM map of DSR2-DSAD1 complex (cross-linked) before local refinement
Method: single particle / : Wang RW, Xu Q, Wu ZX, Li JL, Shi ZB, Li FX

EMDB-38888:
Local refinement of DSR2-DSAD1 complex (cross-linked)
Method: single particle / : Wang RW, Xu Q, Wu ZX, Li JL, Shi ZB, Li FX

EMDB-38889:
Cryo-EM structure of DSR2-DSAD1 complex (cross-linked)
Method: single particle / : Wang RW, Xu Q, Wu ZX, Li JL, Shi ZB, Li FX

EMDB-38890:
The Cryo-EM map of DSR2 tetramer bound with two DSAD1 inhibitor on the same side before local refinement
Method: single particle / : Wang RW, Xu Q, Wu ZX, Li JL, Shi ZB, Li FX

EMDB-38891:
Local refinement of DSR2 tetramer bound with two DSAD1 inhibitor on the same side
Method: single particle / : Wang RW, Xu Q, Wu ZX, Li JL, Shi ZB, Li FX

EMDB-38901:
Local refinement of DSR2 tetramer bound with two DSAD1 inhibitor on the same side
Method: single particle / : Wang RW, Xu Q, Wu ZX, Li JL, Shi ZB, Li FX

EMDB-38902:
The Cryo-EM structure of anti-phage defense associated DSR2 tetramer bound with two DSAD1 inhibitors (same side)
Method: single particle / : Wang RW, Xu Q, Wu ZX, Li JL, Shi ZB, Li FX

EMDB-38907:
The Cryo-EM structure of anti-phage defense associated DSR2 tetramer bound with two DSAD1 inhibitors (opposite side)
Method: single particle / : Wang RW, Xu Q, Wu ZX, Li JL, Shi ZB, Li FX

EMDB-39912:
The cryo-EM map of DSR2-tail tube-NAD complex before local refinement
Method: single particle / : Wang R, Xu Q, Wu Z, Li J, Yang R, Shi Z, Li F

EMDB-39913:
Local refinement of DSR2-tail tube-NAD+ complex
Method: single particle / : Wang R, Xu Q, Wu Z, Li J, Yang R, Shi Z, Li F

EMDB-39914:
Local refinement of DSR2-tail tube-NAD+ complex
Method: single particle / : Wang R, Xu Q, Wu Z, Li J, Yang R, Shi Z, Li F

EMDB-39925:
The Cryo-EM structure of DSR2-Tail tube-NAD+ complex
Method: single particle / : Wang R, Xu Q, Wu Z, Li J, Yang R, Shi Z, Li F

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more