[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 24 items for (author: gabus & c)

EMDB-19822:
Helical reconstruction of yeast eisosome protein Pil1 bound to membrane composed of lipid mixture +PIP2/+bromosterol (DOPC, DOPE, DOPS, bromo-ergosterol, PI(4,5)P2 35:20:20:15:10)
Method: helical / : Kefauver JM, Zou L, Desfosses A, Loewith RJ

EMDB-18307:
Native eisosome lattice bound to plasma membrane microdomain
Method: single particle / : Kefauver JM, Zou L, Loewith RJ, Desfosses A

EMDB-18308:
Helical reconstruction of yeast eisosome protein Pil1 bound to membrane composed of lipid mixture -PIP2/+sterol (DOPC, DOPE, DOPS, cholesterol 30:20:20:30)
Method: helical / : Kefauver JM, Zou L, Desfosses A, Loewith RJ

EMDB-18309:
Helical reconstruction of yeast eisosome protein Pil1 bound to membrane composed of lipid mixture +PIP2/-sterol (DOPC, DOPE, DOPS, PI(4,5)P2 50:20:20:10)
Method: helical / : Kefauver JM, Zou L, Desfosses A, Loewith RJ

EMDB-18310:
Helical reconstruction of yeast eisosome protein Pil1 bound to membrane composed of lipid mixture +PIP2/+sterol (DOPC, DOPE, DOPS, cholesterol, PI(4,5)P2 35:20:20:15:10)
Method: helical / : Kefauver JM, Zou L, Desfosses A, Loewith RJ

EMDB-18311:
Compact state - Native eisosome lattice bound to plasma membrane microdomain
Method: single particle / : Kefauver JM, Zou L, Desfosses A, Loewith RJ

EMDB-18312:
Stretched state - Native eisosome lattice bound to plasma membrane microdomain
Method: single particle / : Kefauver JM, Zou L, Desfosses A, Loewith RJ

PDB-8qb7:
Pil1 in native eisosome lattice bound to plasma membrane microdomain
Method: single particle / : Kefauver JM, Zou L, Loewith RJ, Desfosses A

PDB-8qb8:
Lsp1 in native eisosome lattice bound to plasma membrane microdomain
Method: single particle / : Kefauver JM, Zou L, Loewith RJ, Desfosses A

PDB-8qb9:
Helical reconstruction of yeast eisosome protein Pil1 bound to membrane composed of lipid mixture -PIP2/+sterol (DOPC, DOPE, DOPS, cholesterol 30:20:20:30)
Method: helical / : Kefauver JM, Zou L, Desfosses A, Loewith RJ

PDB-8qbb:
Helical reconstruction of yeast eisosome protein Pil1 bound to membrane composed of lipid mixture +PIP2/-sterol (DOPC, DOPE, DOPS, PI(4,5)P2 50:20:20:10)
Method: helical / : Kefauver JM, Zou L, Desfosses A, Loewith RJ

PDB-8qbd:
Helical reconstruction of yeast eisosome protein Pil1 bound to membrane composed of lipid mixture +PIP2/+sterol (DOPC, DOPE, DOPS, cholesterol, PI(4,5)P2 35:20:20:15:10)
Method: helical / : Kefauver JM, Zou L, Desfosses A, Loewith RJ

PDB-8qbe:
Compact state - Pil1 in native eisosome lattice bound to plasma membrane microdomain
Method: single particle / : Kefauver JM, Zou L, Desfosses A, Loewith RJ

PDB-8qbf:
Compact state - Pil1 dimer with lipid headgroups fitted in native eisosome lattice bound to plasma membrane microdomain
Method: single particle / : Kefauver JM, Zou L, Desfosses A, Loewith RJ

PDB-8qbg:
Stretched state - Pil1 in native eisosome lattice bound to plasma membrane microdomain
Method: single particle / : Kefauver JM, Zou L, Desfosses A, Loewith RJ

EMDB-13594:
Cryo-EM structure of Saccharomyces cerevisiae TOROID (TORC1 Organized in Inhibited Domains).
Method: single particle / : Felix J, Prouteau M, Bourgoint C, Bonadei L, Desfosses A, Gabus C, Sadian Y, Savvides SN, Gutsche I, Loewith R

EMDB-13595:
Helical reconstruction of TOROID (TORC1 Organized in Inhibited Domains) filaments.
Method: helical / : Felix J, Prouteau M, Bourgoint C, Bonnadei L, Desfosses A, Gabus C, Sadian Y, Savvides SN, Gutsche I, Loewith R

PDB-7pqh:
Cryo-EM structure of Saccharomyces cerevisiae TOROID (TORC1 Organized in Inhibited Domains).
Method: single particle / : Felix J, Prouteau M, Bourgoint C, Bonadei L, Desfosses A, Gabus C, Sadian Y, Savvides SN, Gutsche I, Loewith R

EMDB-15364:
Cryo-EM structure of the SEA complex (consensus map)
Method: single particle / : Tafur L, Loewith R

EMDB-15373:
Cryo-EM structure of the SEA complex (protomer focused map)
Method: single particle / : Tafur L, Loewith R

EMDB-15374:
Cryo-EM structure of the SEA complex (Sea2-Sea3 focused map)
Method: single particle / : Tafur L, Loewith R

EMDB-15381:
Cryo-EM structure of the SEA complex (wing focused map)
Method: single particle / : Tafur L, Loewith R

PDB-8adl:
Cryo-EM structure of the SEA complex
Method: single particle / : Tafur L, Loewith R

PDB-8ae6:
Cryo-EM structure of the SEA complex wing (SEACIT)
Method: single particle / : Tafur L, Loewith R

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more