[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 44 items for (author: fucini, & p)

PDB-7naw:
Bacterial 30S ribosomal subunit assembly complex state B (Consensus Refinement)
Method: single particle / : Schedlbauer A, Iturrioz I, Ochoa-Lizarralde B, Diercks T, Kaminishi T, Capuni R, Astigarraga E, Gil-Carton D, Fucini P, Connell S

PDB-9h8g:
Complex 5 30S-GE81112
Method: single particle / : Schedlbauer A, Han X, van Bakel W, Kaminishi T, Ochoa-Lizarralde B, Iturrioz I, Capuni R, Parry R, Zegarra R, Gil-Carton D, Lopez-Alonso JP, Barragan Sanz K, Brandi L, Gualerzi CO, Fucini P, Connell SR

PDB-9h9h:
Complex 1 30S-IF1-IF2-IF3-GE81112
Method: single particle / : Schedlbauer A, Han X, van Bakel W, Kaminishi T, Ochoa-Lizarralde B, Iturrioz I, Capuni R, Parry R, Zegarra R, Gil-Carton D, Lopez-Alonso JP, Barragan Sanz K, Brandi L, Gualerzi CO, Fucini P, Connell SR

PDB-9h9i:
Complex 2 (HEAD) 30S-IF1-IF3-tRNA-GE81112
Method: single particle / : Schedlbauer A, Han X, van Bakel W, Kaminishi T, Ochoa-Lizarralde B, Iturrioz I, Capuni R, Parry R, Zegarra R, Gil-Carton D, Lopez-Alonso JP, Barragan Sanz K, Brandi L, Gualerzi CO, Fucini P, Connell SR

PDB-9h9j:
Complex 2 (BODY) 30S-IF1-IF3-tRNA-GE81112
Method: single particle / : Schedlbauer A, Han X, van Bakel W, Kaminishi T, Ochoa-Lizarralde B, Iturrioz I, Capuni R, Parry R, Zegarra R, Gil-Carton D, Lopez-Alonso JP, Barragan Sanz K, Brandi L, Gualerzi CO, Fucini P, Connell SR

PDB-9h9k:
Complex 3 (HEAD) 30S-tRNA-GE81112
Method: single particle / : Schedlbauer A, Han X, van Bakel W, Kaminishi T, Ochoa-Lizarralde B, Iturrioz I, Capuni R, Parry R, Zegarra R, Gil-Carton D, Lopez-Alonso JP, Barragan Sanz K, Brandi L, Gualerzi CO, Fucini P, Connell SR

PDB-9h9l:
Complex 3 (BODY) 30S-tRNA-GE81112
Method: single particle / : Schedlbauer A, Han X, van Bakel W, Kaminishi T, Ochoa-Lizarralde B, Iturrioz I, Capuni R, Parry R, Zegarra R, Gil-Carton D, Lopez-Alonso JP, Barragan Sanz K, Brandi L, Gualerzi CO, Fucini P, Connell SR

PDB-9h9m:
Complex 4 (HEAD) 30S-GE81112 (weak residual tRNA)
Method: single particle / : Schedlbauer A, Han X, van Bakel W, Kaminishi T, Ochoa-Lizarralde B, Iturrioz I, Capuni R, Parry R, Zegarra R, Gil-Carton D, Lopez-Alonso JP, Barragan Sanz K, Brandi L, Gualerzi CO, Fucini P, Connell SR

PDB-9h9n:
Complex 4 (BODY) 30S-GE81112 (weak residual tRNA)
Method: single particle / : Schedlbauer A, Han X, van Bakel W, Kaminishi T, Ochoa-Lizarralde B, Iturrioz I, Capuni R, Parry R, Zegarra R, Gil-Carton D, Lopez-Alonso JP, Barragan Sanz K, Brandi L, Gualerzi CO, Fucini P, Connell SR

PDB-7boe:
Bacterial 30S ribosomal subunit assembly complex state M (Consensus refinement)
Method: single particle / : Schedlbauer A, Iturrioz I, Ochoa-Lizarralde B, Diercks T, Lopez-Alonso J, Kaminishi T, Capuni R, Astigarraga E, Gil-Carton D, Fucini P, Connell SR

PDB-7boh:
Complete Bacterial 30S ribosomal subunit assembly complex state E (+RbfA)(Consensus Refinement)
Method: single particle / : Schedlbauer A, Iturrioz I, Ochoa-Lizarralde B, Diercks T, Kaminishi T, Capuni R, Astigarraga E, Gil-Carton D, Fucini P, Connell S

PDB-7nar:
Complete Bacterial 30S ribosomal subunit assembly complex state F (+RsgA)(Consensus Refinement)
Method: single particle / : Schedlbauer A, Iturrioz I, Ochoa-Lizarralde B, Diercks T, Kaminishi T, Capuni R, Astigarraga E, Gil-Carton D, Fucini P, Connell S

PDB-7nat:
Bacterial 30S ribosomal subunit assembly complex state A (Consensus refinement)
Method: single particle / : Schedlbauer A, Iturrioz I, Ochoa-Lizarralde B, Diercks T, Kaminishi T, Capuni R, Astigarraga E, Gil-Carton D, Fucini P, Connell S

PDB-7nau:
Bacterial 30S ribosomal subunit assembly complex state C (Consensus Refinement)
Method: single particle / : Schedlbauer A, Iturrioz I, Ochoa-Lizarralde B, Diercks T, Kaminishi T, Capuni R, Astigarraga E, Gil-Carton D, Fucini P, Connell S

PDB-7nav:
Bacterial 30S ribosomal subunit assembly complex state D (Consensus refinement)
Method: single particle / : Schedlbauer A, Iturrioz I, Ochoa-Lizarralde B, Diercks T, Kaminishi T, Capuni R, Astigarraga E, Gil-Carton D, Fucini P, Connell S

PDB-7nax:
Complete Bacterial 30S ribosomal subunit assembly complex state I (Consensus Refinement)
Method: single particle / : Schedlbauer A, Iturrioz I, Ochoa-Lizarralde B, Diercks T, Lopez-Alonso J, Kaminishi T, Capuni R, Astigarraga E, Gil-Carton D, Fucini P, Connell S

PDB-7af3:
Bacterial 30S ribosomal subunit assembly complex state M (head domain)
Method: single particle / : Schedlbauer A, Iturrioz I, Ochoa-Lizarralde B, Diercks T, Lopez-Alonso J, Kaminishi T, Capuni R, Astigarraga E, Gil-Carton D, Fucini P, Connell SR

PDB-7af5:
Bacterial 30S ribosomal subunit assembly complex state I (head domain)
Method: single particle / : Schedlbauer A, Iturrioz I, Ochoa-Lizarralde B, Diercks T, Lopez-Alonso J, Kaminishi T, Capuni R, Astigarraga E, Gil-Carton D, Fucini P, Connell S

PDB-7af8:
Bacterial 30S ribosomal subunit assembly complex state E (head domain)
Method: single particle / : Schedlbauer A, Iturrioz I, Ochoa-Lizarralde B, Diercks T, Lopez-Alonso J, Kaminishi T, Capuni R, Astigarraga E, Fucini P, Connell S

PDB-7afa:
Bacterial 30S ribosomal subunit assembly complex state F (head domain)
Method: single particle / : Schedlbauer A, Iturrioz I, Ochoa-Lizarralde B, Kaminishi T, Diercks T, Capuni R, Astigarraga E, Gil-Carton D, Fucini P, Connell S

PDB-7afd:
Bacterial 30S ribosomal subunit assembly complex state A (head domain)
Method: single particle / : Schedlbauer A, Iturrioz I, Ochoa-Lizarralde B, Diercks T, Kaminishi T, Capuni R, Astigarraga E, Gil-Carton D, Fucini P, Connell S

PDB-7afh:
Bacterial 30S ribosomal subunit assembly complex state C (head domain)
Method: single particle / : Schedlbauer A, Iturrioz I, Ochoa-Lizarralde B, Diercks T, Kaminishi T, Capuni R, Astigarraga E, Gil-Carton D, Fucini P, Connell S

PDB-7afi:
Bacterial 30S ribosomal subunit assembly complex state C (body domain)
Method: single particle / : Schedlbauer A, Iturrioz I, Ochoa-Lizarralde B, Diercks T, Kaminishi T, Capuni R, Astigarraga E, Gil-Carton D, Fucini P, Connell S

PDB-7afk:
Bacterial 30S ribosomal subunit assembly complex state D (head domain)
Method: single particle / : Schedlbauer A, Iturrioz I, Ochoa-Lizarralde B, Diercks T, Kaminishi T, Capuni R, Astigarraga E, Gil-Carton D, Fucini P, Connell S

PDB-7afl:
Bacterial 30S ribosomal subunit assembly complex state D (multibody refinement for body domain of 30S ribosome)
Method: single particle / : Schedlbauer A, Iturrioz I, Ochoa-Lizarralde B, Diercks T, Kaminishi T, Capuni R, Astigarraga E, Gil-Carton D, Fucini P, Connell S

PDB-7afn:
Bacterial 30S ribosomal subunit assembly complex state B (head domain)
Method: single particle / : Schedlbauer A, Iturrioz I, Ochoa-Lizarralde B, Diercks T, Kaminishi T, Capuni R, Astigarraga E, Gil-Carton D, Fucini P, Connell S

PDB-7afo:
Bacterial 30S ribosomal subunit assembly complex state B (body domain)
Method: single particle / : Schedlbauer A, Iturrioz I, Ochoa-Lizarralde B, Diercks T, Kaminishi T, Capuni R, Astigarraga E, Gil-Carton D, Fucini P, Connell S

PDB-7bod:
Bacterial 30S ribosomal subunit assembly complex state M (body domain)
Method: single particle / : Schedlbauer A, Iturrioz I, Ochoa-Lizarralde B, Diercks T, Lopez-Alonso J, Kaminishi T, Capuni R, Astigarraga E, Gil-Carton D, Fucini P, Connell SR

PDB-7bof:
Bacterial 30S ribosomal subunit assembly complex state I (body domain)
Method: single particle / : Schedlbauer A, Iturrioz I, Ochoa-Lizarralde B, Diercks T, Lopez-Alonso J, Kaminishi T, Capuni R, Astigarraga E, Gil-Carton D, Fucini P, Connell S

PDB-7bog:
Bacterial 30S ribosomal subunit assembly complex state E (body domain)
Method: single particle / : Schedlbauer A, Iturrioz I, Ochoa-Lizarralde B, Diercks T, Lopez-Alonso J, Kaminishi T, Capuni R, Astigarraga E, Gil-Carton D, Fucini P, Connell S

PDB-7boi:
Bacterial 30S ribosomal subunit assembly complex state F (multibody refinement for body domain of 30S ribosome)
Method: single particle / : Schedlbauer A, Iturrioz I, Ochoa-Lizarralde B, Diercks T, Kaminishi T, Capuni R, Astigarraga E, Gil-Carton D, Fucini P, Connell S

PDB-7nas:
Bacterial 30S ribosomal subunit assembly complex state A (multibody refinement for body domain of 30S ribosome)
Method: single particle / : Schedlbauer A, Iturrioz I, Ochoa-Lizarralde B, Diercks T, Kaminishi T, Capuni R, Astigarraga E, Gil-Carton D, Fucini P, Connell S

PDB-5no3:
RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate without uS3)
Method: single particle / : Lopez-Alonso JP, Kaminishi T, Kikuchi T, Hirata Y, Iturrioz I, Dhimole N, Schedlbauer A, Hase Y, Goto S, Kurita D, Muto A, Zhou S, Naoe C, Mills DJ, Gil-Carton D, Takemoto C, Himeno H, Fucini P, Connell SR

PDB-5no4:
RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate with uS3)
Method: single particle / : Lopez-Alonso JP, Kaminishi T, Kikuchi T, Hirata Y, Iturrioz I, Dhimole N, Schedlbauer A, Hase Y, Goto S, Kurita D, Muto A, Zhou S, Naoe C, Mills DJ, Gil-Carton D, Takemoto C, Himeno H, Fucini P, Connell SR

PDB-5no2:
RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate)
Method: single particle / : Lopez-Alonso JP, Kaminishi T, Kikuchi T, Hirata Y, Iturrioz I, Dhimole N, Schedlbauer A, Hase Y, Goto S, Kurita D, Muto A, Zhou S, Naoe C, Mills DJ, Gil-Carton D, Takemoto C, Himeno H, Fucini P, Connell SR

PDB-5me0:
Structure of the 30S Pre-Initiation Complex 1 (30S IC-1) Stalled by GE81112
Method: single particle / : Lopez-Alonso JP, Fabbretti A, Kaminishi T, Iturrioz I, Brandi L, Gil Carton D, Gualerzi C, Fucini P, Connell S

PDB-5me1:
Structure of the 30S Pre-Initiation Complex 2 (30S IC-2) Stalled by GE81112
Method: single particle / : Lopez-Alonso JP, Fabbretti A, Kaminishi T, Iturrioz I, Brandi L, Gil Carton D, Gualerzi C, Fucini P, Connell S

PDB-4v5m:
tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)
Method: single particle / : Ratje AH, Loerke J, Mikolajka A, Bruenner M, Hildebrand PW, Starosta AL, Doenhoefer A, Connell SR, Fucini P, Mielke T, Whitford PC, Onuchic JN, Yu Y, Sanbonmatsu KY, Hartmann RK, Penczek PA, Wilson DN, Spahn CMT

PDB-4v5n:
tRNA translocation on the 70S ribosome: the post- translocational translocation intermediate TI(POST)
Method: single particle / : Ratje AH, Loerke J, Mikolajka A, Bruenner M, Hildebrand PW, Starosta AL, Doenhoefer A, Connell SR, Fucini P, Mielke T, Whitford PC, Onuchic JN, Yu Y, Sanbonmatsu KY, Hartmann RK, Penczek PA, Wilson DN, Spahn CMT

PDB-4v61:
Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.
Method: single particle / : Sharma MR, Wilson DN, Datta PP, Barat C, Schluenzen F, Fucini P, Agrawal RK

PDB-3deg:
Complex of elongating Escherichia coli 70S ribosome and EF4(LepA)-GMPPNP
Method: single particle / : Connell SR, Topf M, Qin Y, Wilson DN, Mielke T, Fucini P, Nierhaus KH, Spahn CMT

PDB-2r1c:
Coordinates of the thermus thermophilus ribosome binding factor A (RbfA) homology model as fitted into the CRYO-EM map of a 30S-RBFA complex
Method: single particle / : Datta PP, Wilson DN, Kawazoe M, Swami NK, Kaminishi T, Sharma MR, Booth TM, Takemoto C, Fucini P, Yokoyama S, Agrawal RK

PDB-2r1g:
Coordinates of the thermus thermophilus 30S components neighboring RbfA as obtained by fitting into the CRYO-EM map of A 30S-RBFA complex
Method: single particle / : Datta PP, Wilson DN, Kawazoe M, Swami NK, Kaminishi T, Sharma MR, Booth TM, Takemoto C, Fucini P, Yokoyama S, Agrawal RK

PDB-2om7:
Structural Basis for Interaction of the Ribosome with the Switch Regions of GTP-bound Elongation Factors
Method: single particle / : Connell SR, Wilson DN, Rost M, Schueler M, Giesebrecht J, Dabrowski M, Mielke T, Fucini P, Spahn CMT

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more