[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 23 items for (author: freyer & c)

EMDB-54254:
Structure of 70S ribosome-EF-G(P610L)-GDP-Pi-apramycin complex with tRNAs in hybrid state 2 (H2- EF-G(P610L)-GDP-Pi)
Method: single particle / : Ghosh Dastidar N, Freyer N, Petrychenko V, Schwarzer AC, Peng BZ, Samatova E, Kothe C, Schmidt M, Peske F, Politi A, Urlaub H, Fischer N, Rodnina MV, Wohlgemuth I

PDB-9rtv:
Structure of the 70S-EF-G(P610L)-GDP-Pi ribosome complex with tRNAs in hybrid state 2 (H2-EF-G(P610L)-GDP-Pi)
Method: single particle / : Ghosh Dastidar N, Freyer N, Petrychenko V, Schwarzer AC, Peng BZ, Samatova E, Kothe C, Schmidt M, Peske F, Politi A, Urlaub H, Fischer N, Rodnina MV, Wohlgemuth I

EMDB-54253:
Structure of 70S ribosome-EF-G(P610L)-GDP-Pi-apramycin complex with tRNAs in hybrid state 1 (H1- EF-G(P610L)-GDP-Pi)
Method: single particle / : Ghosh Dastidar N, Freyer N, Petrychenko V, Schwarzer AC, Peng BZ, Samatova E, Kothe C, Schmidt M, Peske F, Politi A, Urlaub H, Fischer N, Rodnina MV, Wohlgemuth I

EMDB-55123:
Structure of 70S ribosome-apramycin complex with tRNAs in classic state (C)
Method: single particle / : Ghosh Dastidar N, Freyer N, Petrychenko V, Schwarzer AC, Peng BZ, Samatova E, Kothe C, Schmidt M, Peske F, Politi A, Urlaub H, Fischer N, Rodnina MV, Wohlgemuth I

EMDB-55124:
Structure of 70S ribosome-apramycin complex with tRNAs in hybrid state 1 (H1)
Method: single particle / : Ghosh Dastidar N, Freyer N, Petrychenko V, Schwarzer AC, Peng BZ, Samatova E, Kothe C, Schmidt M, Peske F, Politi A, Urlaub H, Fischer N, Rodnina MV, Wohlgemuth I

EMDB-55125:
Structure of 70S ribosome-apramycin complex with tRNAs in hybrid state 2 (H2)
Method: single particle / : Ghosh Dastidar N, Freyer N, Petrychenko V, Schwarzer AC, Peng BZ, Samatova E, Kothe C, Schmidt M, Peske F, Politi A, Urlaub H, Fischer N, Rodnina MV, Wohlgemuth I

PDB-9rtu:
Structure of the 70S-EF-G(P610L)-GDP-Pi ribosome complex with tRNAs in hybrid state 1 (H1-EF-G(P610L)-GDP-Pi)
Method: single particle / : Ghosh Dastidar N, Freyer N, Petrychenko V, Schwarzer AC, Peng BZ, Samatova E, Kothe C, Schmidt M, Peske F, Politi A, Urlaub H, Fischer N, Rodnina MV, Wohlgemuth I

EMDB-47791:
Mouse mitoribosome large subunit assembly intermediate bound to NSUN4, METRF4, GTPBP7, GTPBP10 and the MALSU1-L0R8F8-mt-ACP complex (without uL16m), State B1 (SAMC knock-out)
Method: single particle / : Singh V, Glasgow RIC, Rorbach J, Freyer C, Amunts A, Wredenberg A

PDB-9e9c:
Mouse mitoribosome large subunit assembly intermediate bound to NSUN4, METRF4, GTPBP7, GTPBP10 and the MALSU1-L0R8F8-mt-ACP complex (without uL16m), State B1 (SAMC knock-out)
Method: single particle / : Singh V, Rorbach J, Freyer C, Amunts A, Wredenberg A

EMDB-52047:
Mouse mitoribosome large subunit assembly intermediate bound to NSUN4, METRF4, GTPBP7, GTPBP10 and the MALSU-L0R8F8-mtACP complex with uL16m, State B2 (SAMC knock-out)
Method: single particle / : Singh V, Rorbach J, Freyer C, Amunts A, Wredenberg A

PDB-9hcf:
Mouse mitoribosome large subunit assembly intermediate bound to NSUN4, METRF4, GTPBP7, GTPBP10 and the MALSU-L0R8F8-mtACP complex with uL16m, State B2 (SAMC knock-out)
Method: single particle / : Singh V, Rorbach J, Freyer C, Amunts A, Wredenberg A

EMDB-52044:
Mouse mitoribosome large subunit assembly intermediate (without uL16m) bound to MRM3-dimer, DDX28 and the MALSU-L0R8F8-mt-ACP complex, State A1 (SAMC knock-out)
Method: single particle / : Singh V, Glasgow RIC, Rorbach J, Freyer C, Amunts A, Wredenberg A

EMDB-52046:
Mouse mitoribosome large subunit assembly intermediate (without uL16m) bound to MRM3 dimer and the MALSU-L0R8F8-mt-ACP complex, State A3 (SAMC knock out)
Method: single particle / : Singh V, Rorbach J, Freyer C, Amunts A, Wredenberg A

EMDB-52048:
Mouse mitoribosome large subunit assembly intermediate bound to NSUN4, METRF4, MRM2, GTPBP7 and MALSU1-L0R8F8-mt-ACP complex, State D (SAMC knock-out)
Method: single particle / : Singh V, Glasgow R, Amunts A, Freyer C, Wredenberg A

EMDB-52049:
Mouse mitoribosome large subunit assembly intermediate bound to NSUN4, METRF4, GTPBP7 and the MALSU1-L0R8F8-mt-ACP complex, State C1 (SAMC knock-out)
Method: single particle / : Singh V, Glasgow RIC, Rorbach J, Freyer C, Amunts A, Wredenberg A

EMDB-52408:
Mouse mitochondrial large subunit assembly intermediate in complex with MRM2 dimer with uL16m bound (SAMC Knock-out)
Method: single particle / : Singh V, Rorbach J, Freyer C, Wredenberg A

EMDB-52430:
Mouse mitoribosome large subunit assembly intermediate bound to NSUN4, MTERF4 and the MALSU1-L0R8F8-mtACP complex, State C2 (SAMC knock-out)
Method: single particle / : Singh V, Glasgow R, Rorbach J, Freyer C, Amunts A, Wredenberg A

PDB-9hcc:
Mouse mitoribosome large subunit assembly intermediate (without uL16m) bound to MRM3-dimer, DDX28 and the MALSU-L0R8F8-mt-ACP complex, State A1 (SAMC knock-out)
Method: single particle / : Singh V, Rorbach J, Freyer C, Amunts A, Wredenberg A

PDB-9hce:
Mouse mitoribosome large subunit assembly intermediate (without uL16m) bound to MRM3 dimer and the MALSU-L0R8F8-mt-ACP complex, State A3 (SAMC knock out)
Method: single particle / : Singh V, Rorbach J, Freyer C, Amunts A, Wredenberg A

PDB-9hcg:
Mouse mitoribosome large subunit assembly intermediate bound to NSUN4, METRF4, MRM2, GTPBP7 and MALSU1-L0R8F8-mt-ACP complex, State D (SAMC knock-out)
Method: single particle / : Singh V, Freyer C, Amunts A, Wredenberg A

PDB-9hch:
Mouse mitoribosome large subunit assembly intermediate bound to NSUN4, METRF4, GTPBP7 and the MALSU1-L0R8F8-mt-ACP complex, State C1 (SAMC knock-out)
Method: single particle / : Singh V, Rorbach J, Freyer C, Amunts A, Wredenberg A

EMDB-52045:
Mouse mitoribosome large subunit assembly intermediate (with uL16m) bound to MRM3-dimer, DDX28 and the MALSU-L0R8F8-mt-ACP complex, state A2 (SAMC knock-out)
Method: single particle / : Singh V, Glasgow RIC, Rorbach J, Freyer C, Amunts A, Wredenberg A

PDB-9hcd:
Mouse mitoribosome large subunit assembly intermediate (with uL16m) bound to MRM3-dimer, DDX28 and the MALSU-L0R8F8-mt-ACP complex, state A2 (SAMC knock-out)
Method: single particle / : Singh V, Rorbach J, Freyer C, Amunts A, Wredenberg A

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more