[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 184 items for (author: font & j)

EMDB-56070:
E. coli 70S ribosome with A- and P-site tRNA
Method: single particle / : Steinmetzger C, Riad M, Petzold K

EMDB-56091:
E. coli 70S ribosome with A/P- and P/E-site tRNA
Method: single particle / : Steinmetzger C, Riad M, Petzold K

EMDB-56128:
E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A- and P-site tRNA
Method: single particle / : Steinmetzger C, Riad M, Petzold K

EMDB-56827:
E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A/P- and P/E-site tRNA
Method: single particle / : Steinmetzger C, Riad M, Petzold K

EMDB-56828:
E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A- and P-site tRNA
Method: single particle / : Steinmetzger C, Riad M, Petzold K

EMDB-56829:
E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A/P- and P/E-site tRNA
Method: single particle / : Steinmetzger C, Riad M, Petzold K

EMDB-56830:
E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with A- and P-site tRNA
Method: single particle / : Steinmetzger C, Riad M, Petzold K

EMDB-56831:
E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with A/P- and P/E-site tRNA
Method: single particle / : Steinmetzger C, Riad M, Petzold K

EMDB-56832:
E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A- and P-site tRNA
Method: single particle / : Steinmetzger C, Riad M, Petzold K

EMDB-56833:
E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A/P- and P/E-site tRNA
Method: single particle / : Steinmetzger C, Riad M, Petzold K

EMDB-56834:
E. coli 70S ribosome with P-site tRNA
Method: single particle / : Steinmetzger C, Riad M, Petzold K

EMDB-56835:
E. coli 70S ribosome without tRNA
Method: single particle / : Steinmetzger C, Riad M, Petzold K

EMDB-56836:
E. coli 70S ribosome with A- and P/E-site tRNA
Method: single particle / : Steinmetzger C, Riad M, Petzold K

EMDB-56837:
E. coli 70S ribosome with P/E-site tRNA
Method: single particle / : Steinmetzger C, Riad M, Petzold K

EMDB-56839:
E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with P-site tRNA
Method: single particle / : Steinmetzger C, Riad M, Petzold K

EMDB-56840:
E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, without tRNA
Method: single particle / : Steinmetzger C, Riad M, Petzold K

EMDB-56841:
E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A- and P/E-site tRNA
Method: single particle / : Steinmetzger C, Riad M, Petzold K

EMDB-56842:
E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with P/E-site tRNA
Method: single particle / : Steinmetzger C, Riad M, Petzold K

EMDB-56843:
E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with P-site tRNA
Method: single particle / : Steinmetzger C, Riad M, Petzold K

EMDB-56844:
E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, without tRNA
Method: single particle / : Steinmetzger C, Riad M, Petzold K

EMDB-56845:
E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A- and P/E-site tRNA
Method: single particle / : Steinmetzger C, Riad M, Petzold K

EMDB-56846:
E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with P/E-site tRNA
Method: single particle / : Steinmetzger C, Riad M, Petzold K

EMDB-56847:
E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with P-site tRNA
Method: single particle / : Steinmetzger C, Riad M, Petzold K

EMDB-56848:
E. coli 70S ribosome, conformational ground state mutation in SSU-h41, without tRNA
Method: single particle / : Steinmetzger C, Riad M, Petzold K

EMDB-56849:
E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with A- and P/E-site tRNA
Method: single particle / : Steinmetzger C, Riad M, Petzold K

EMDB-56850:
E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with P/E-site tRNA
Method: single particle / : Steinmetzger C, Riad M, Petzold K

EMDB-56851:
E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with P-site tRNA
Method: single particle / : Steinmetzger C, Riad M, Petzold K

EMDB-56852:
E. coli 70S ribosome, conformational excited state mutation in SSU-h41, without tRNA
Method: single particle / : Steinmetzger C, Riad M, Petzold K

EMDB-56853:
E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A- and P/E-site tRNA
Method: single particle / : Steinmetzger C, Riad M, Petzold K

EMDB-56854:
E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with P/E-site tRNA
Method: single particle / : Steinmetzger C, Riad M, Petzold K

EMDB-57830:
Herpes simplex virus 2 delta28-73 glycoprotein C ectodomain in complex with C3b
Method: single particle / : Rojas Rechy MH, Atanasiu D, Hook LM, Cairns MT, Saw WT, Cahill A, Guo Z, Calabrese AN, Ranson NA, Friedman HM, Cohen GH, Fontana J

PDB-30je:
Herpes simplex virus 2 delta28-73 glycoprotein C ectodomain in complex with C3b
Method: single particle / : Rojas Rechy MH, Atanasiu D, Hook LM, Cairns MT, Saw WT, Cahill A, Guo Z, Calabrese AN, Ranson NA, Friedman HM, Cohen GH, Fontana J

EMDB-56971:
Molecular basis of ZPD homopolymerization: cryo-EM structure of a native vertebrate egg coat filament
Method: single particle / : Banjara S, Okumura H, Jovine L

PDB-28yj:
Molecular basis of ZPD homopolymerization: cryo-EM structure of a native vertebrate egg coat filament
Method: single particle / : Banjara S, Okumura H, Jovine L

EMDB-47126:
Cryo-EM map of the human TREX-2.1 complex bound to DDX39B(UAP56)
Method: single particle / : Clarke BP, Xie Y, Ren Y

EMDB-72652:
Cereblon-DDB1 with Golcadomide
Method: single particle / : Watson ER, Lander GC

EMDB-72653:
Cereblon with Golcadomide and Ikaros ZF1-2-3
Method: single particle / : Watson ER, Lander GC

PDB-9y7d:
Cereblon with Golcadomide and Ikaros ZF1-2-3
Method: single particle / : Watson ER, Lander GC

EMDB-46983:
Cryo-EM structure of the human TREX-2.1 complex (LENG8/PCID2/DSS1) bound to the N-terminal motif of DDX39B(UAP56)
Method: single particle / : Clarke BP, Xie Y, Ren Y

EMDB-46985:
Cryo-EM structure of the human TREX-2.1 complex (LENG8/PCID2/DSS1) bound to DDX39B(UAP56)
Method: single particle / : Clarke BP, Xie Y, Ren Y

PDB-9dlr:
Cryo-EM structure of the human TREX-2.1 complex (LENG8/PCID2/DSS1) bound to the N-terminal motif of DDX39B(UAP56)
Method: single particle / : Clarke BP, Xie Y, Ren Y

PDB-9dlv:
Cryo-EM structure of the human TREX-2.1 complex (LENG8/PCID2/DSS1) bound to DDX39B(UAP56)
Method: single particle / : Clarke BP, Xie Y, Ren Y

EMDB-46981:
Cryo-EM map of human TREX-2 complex bound to full-length DDX39B
Method: single particle / : Clarke BP, Xie Y, Ren Y

EMDB-46982:
Cryo-EM structure of human TREX-2 complex bound to DDX39B(UAP56)
Method: single particle / : Clarke BP, Xie Y, Ren Y

PDB-9dlp:
Cryo-EM structure of human TREX-2 complex bound to DDX39B(UAP56)
Method: single particle / : Clarke BP, Xie Y, Ren Y

EMDB-44774:
Tethered respiratory III2IV2 supercomplex from Saccharomyces cerevisiae, CIVa local refinement
Method: single particle / : Eldeeb MH, Carlstrom A, Berndtsson J, Ott M, Fontanesi F

EMDB-44775:
Tethered respiratory III2IV2 supercomplex from Saccharomyces cerevisiae, CIVb local refinement
Method: single particle / : Eldeeb MH, Carlstrom A, Berndtsson J, Ott M, Fontanesi F

EMDB-50762:
Drosophila melanogaster Testis 80S ribosome with IFRD1 (Class 2)
Method: single particle / : Blandy A, Hopes T, Vasconcelos EJR, Turner A, Fatkhullin B, Agapiou M, Fontana J, Aspden JL

EMDB-50763:
Drosophila melanogaster Testis 80S ribosome with IFRD1 (Class 1)
Method: single particle / : Blandy A, Hopes T, Vasconcelos EJR, Turner A, Fatkhullin B, Agapiou M, Fontana J, Aspden JL

EMDB-50764:
Drosophila melanogaster Testis Polysome with P/P and A/A tRNAs (Class 1)
Method: single particle / : Blandy A, Hopes T, Vasconcelos EJR, Turner A, Fatkhullin B, Agapiou M, Fontana J, Aspden JL

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more