[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 5,389 items for (author: du & b)

EMDB-55036:
Human TRPM4 ion channel in MSP2N2 lipid nanodisc in a calcium-bound state
Method: single particle / : Pugh CF, Feilen LP, Zivkovic D, Praestegaard KF, Sideris C, Borthwick NJ, de Lichtenberg C, Bolla JR, Autzen AAA, Autzen HE

PDB-9smk:
Human TRPM4 ion channel in MSP2N2 lipid nanodisc in a calcium-bound state
Method: single particle / : Pugh CF, Feilen LP, Zivkovic D, Praestegaard KF, Sideris C, Borthwick NJ, de Lichtenberg C, Bolla JR, Autzen AAA, Autzen HE

EMDB-48638:
Structure of Human SLC33A1 in complex with oxidized glutathione
Method: single particle / : Gad M, Hite RK

EMDB-48699:
Consensus reconstitution of SLC33A1 in complex with a Fv clasp
Method: single particle / : Gad M, Hite RK

EMDB-71784:
Cryo-EM structure of ATPgammaS-bound Vientovirus FB Rep hexamer
Method: single particle / : Montermoso S, Gupta K, Pumroy RA, Moiseenkova-Bell V, Bushman FD, Van Duyne GD

EMDB-71786:
Cryo-EM structure of ATPgammaS-bound Vientovirus FB Rep hexamer with endonuclease domain density
Method: single particle / : Montermoso S, Gupta K, Pumroy RA, Moiseenkova-Bell V, Bushman FD, Van Duyne GD

EMDB-71787:
Cryo-EM structure of ATPgammaS-bound Vientovirus FB Rep pentamer
Method: single particle / : Montermoso S, Gupta K, Pumroy RA, Moiseenkova-Bell V, Bushman FD, Van Duyne GD

EMDB-71788:
Cryo-EM structure of ATPgammaS-bound Vientovirus FB Rep double hexamer with C1 symmetry
Method: single particle / : Montermoso S, Gupta K, Pumroy RA, Moiseenkova-Bell V, Bushman FD, Van Duyne GD

EMDB-71789:
Cryo-EM structure of ATPgammaS-bound Vientovirus FB Rep double hexamer with C6 symmetry
Method: single particle / : Montermoso S, Gupta K, Pumroy RA, Moiseenkova-Bell V, Bushman FD, Van Duyne GD

EMDB-71790:
Cryo-EM structure of ADP-bound Vientovirus FB Rep hexamer
Method: single particle / : Montermoso S, Gupta K, Pumroy RA, Moiseenkova-Bell V, Bushman FD, Van Duyne GD

PDB-9pqj:
Cryo-EM structure of ATPgammaS-bound Vientovirus FB Rep hexamer
Method: single particle / : Montermoso S, Gupta K, Pumroy RA, Moiseenkova-Bell V, Bushman FD, Van Duyne GD

PDB-9pqm:
Cryo-EM structure of ATPgammaS-bound Vientovirus FB Rep hexamer with endonuclease domain density
Method: single particle / : Montermoso S, Gupta K, Pumroy RA, Moiseenkova-Bell V, Bushman FD, Van Duyne GD

PDB-9pqo:
Cryo-EM structure of ATPgammaS-bound Vientovirus FB Rep pentamer
Method: single particle / : Montermoso S, Gupta K, Pumroy RA, Moiseenkova-Bell V, Bushman FD, Van Duyne GD

PDB-9pqq:
Cryo-EM structure of ATPgammaS-bound Vientovirus FB Rep double hexamer with C1 symmetry
Method: single particle / : Montermoso S, Gupta K, Pumroy RA, Moiseenkova-Bell V, Bushman FD, Van Duyne GD

PDB-9pqr:
Cryo-EM structure of ATPgammaS-bound Vientovirus FB Rep double hexamer with C6 symmetry
Method: single particle / : Montermoso S, Gupta K, Pumroy RA, Moiseenkova-Bell V, Bushman FD, Van Duyne GD

PDB-9pqt:
Cryo-EM structure of ADP-bound Vientovirus FB Rep hexamer
Method: single particle / : Montermoso S, Gupta K, Pumroy RA, Moiseenkova-Bell V, Bushman FD, Van Duyne GD

EMDB-72478:
Strand displacement state I of Human mitochondrial DNA polymerase gamma ternary complex
Method: single particle / : Park J, Yin YW

EMDB-72479:
Strand displacement state II of Human mitochondrial DNA polymerase gamma ternary complex
Method: single particle / : Park J, Yin YW

EMDB-72480:
Strand displacement state III of Human mitochondrial DNA polymerase gamma ternary complex
Method: single particle / : Park J, Yin YW

EMDB-72481:
Strand displacement state IV of Human mitochondrial DNA polymerase gamma ternary complex
Method: single particle / : Park J, Yin YW

PDB-9y4c:
Strand displacement state I of Human mitochondrial DNA polymerase gamma ternary complex
Method: single particle / : Park J, Yin YW

PDB-9y4d:
Strand displacement state II of Human mitochondrial DNA polymerase gamma ternary complex
Method: single particle / : Park J, Yin YW

PDB-9y4e:
Strand displacement state III of Human mitochondrial DNA polymerase gamma ternary complex
Method: single particle / : Park J, Yin YW

PDB-9y4f:
Strand displacement state IV of Human mitochondrial DNA polymerase gamma ternary complex
Method: single particle / : Park J, Yin YW

EMDB-55720:
Cryo-EM reconstruction for n-Tr20U.
Method: single particle / : Mehta R, Glatt S

EMDB-55721:
Cryo-EM structure of nTr20 tRNA
Method: single particle / : Mehta R, Glatt S

EMDB-56131:
L. pneumophila 3-methylcrotonyl-CoA carboxylase holoenzyme A3B6
Method: single particle / : Meir A, Durie C, Somarathne R, Shrestha R, Zehra M, Brodeur C, Bhella D, Lai WC

PDB-9tqc:
L. pneumophila 3-methylcrotonyl-CoA carboxylase holoenzyme A3B6
Method: single particle / : Meir A, Durie C, Somarathne R, Shrestha R, Zehra M, Brodeur C, Bhella D, Lai WC

EMDB-54448:
Cryo-EM structure of activated retron Eco2 (Ec67)
Method: single particle / : Skorupskaite A, Jasnauskaite M, Grigaitis R, Malinauskaite L, Pausch P

EMDB-70395:
Ab1999 in complex with HIV-1 Env RC1
Method: single particle / : Lin ZJ, Cui J, Du J, Relano-Rodriguez I, Escolano A, Pallesen J

PDB-9oed:
Ab1999 in complex with HIV-1 Env RC1
Method: single particle / : Lin ZJ, Cui J, Du J, Relano-Rodriguez I, Escolano A, Pallesen J

EMDB-52583:
Cryo-EM structure of retron Eco2 (Ec67)
Method: single particle / : Jasnauskaite M, Miksys A, Skorupskaite A, Malinauskaite L, Pausch P

EMDB-52584:
Cryo-EM structure of retron Eco2 (Ec67) in presence of Mg ions
Method: single particle / : Skorupskaite A, Jasnauskaite M, Malinauskaite L, Pausch P

PDB-9i2f:
Cryo-EM structure of retron Eco2 (Ec67)
Method: single particle / : Jasnauskaite M, Miksys A, Skorupskaite A, Malinauskaite L, Pausch P

PDB-9i2g:
Cryo-EM structure of retron Eco2 (Ec67) in presence of Mg ions
Method: single particle / : Skorupskaite A, Jasnauskaite M, Malinauskaite L, Pausch P

EMDB-70231:
Ab1983 in complex with HIV-1 Env variant WIN332
Method: single particle / : Lin ZJ, Cui J, Du J, Relano-Rodriguez I, Escolano A, Pallesen J

PDB-9o8m:
Ab1983 in complex with HIV-1 Env variant WIN332
Method: single particle / : Lin ZJ, Cui J, Du J, Relano-Rodriguez I, Escolano A, Pallesen J

EMDB-53569:
CryoEM structure of MraZ in complex with its promoter from Mycoplasma genitalium
Method: single particle / : Reverter D, Sanchez-Alba L, Durand A

EMDB-55332:
CryoEM structure of the octamer MraZ in complex with 1 box promoter from Mycoplasma genitalium
Method: single particle / : Reverter D, Sanchez-Alba L, Durand A

EMDB-55361:
CryoEM structure of MraZ in complex with 4 box promoter from Mycoplasma genitalium
Method: single particle / : Reverter D, Sanchez-Alba L, Durand A

PDB-9r4j:
CryoEM structure of MraZ in complex with its promoter from Mycoplasma genitalium
Method: single particle / : Reverter D, Sanchez-Alba L, Durand A

PDB-9sx6:
CryoEM structure of the octamer MraZ in complex with 1 box promoter from Mycoplasma genitalium
Method: single particle / : Reverter D, Sanchez-Alba L, Durand A

PDB-9sz7:
CryoEM structure of MraZ in complex with 4 box promoter from Mycoplasma genitalium
Method: single particle / : Reverter D, Sanchez-Alba L, Durand A

EMDB-75024:
Cryo-EM structure of the human BK channel bound to the agonist NS1619
Method: single particle / : Gonzalez-Sanabria N, Contreras GF, Perozo E, Latorre R

PDB-10ad:
Cryo-EM structure of the human BK channel bound to the agonist NS1619
Method: single particle / : Gonzalez-Sanabria N, Contreras GF, Perozo E, Latorre R

EMDB-71739:
Legionella Dot/Icm T4SS
Method: subtomogram averaging / : Dutka P, Liu Y, Maggi S, Jensen GJ

EMDB-72186:
Focused refinement map of the periplasmic part of the Legionella pneumophila T4SS.
Method: subtomogram averaging / : Dutka P, Liu Y, Maggi S, Jensen GJ

EMDB-72187:
Focused refinement map of the cytoplasmic region of the Legionella pneumophila T4SS.
Method: subtomogram averaging / : Dutka P, Liu Y, Maggi S, Jensen GJ

EMDB-49897:
Alpha7-nicotinic acetylcholine receptor bound to conotoxin ImI
Method: single particle / : Stowell MHB, Hibbs RE, Noviello CM, Bhattacharjee B

EMDB-49898:
Alpha7-nicotinic acetylcholine receptor bound to conotoxin ImII
Method: single particle / : Stowell MHB, Hibbs RE, Noviello CM, Bhattacharjee B

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more