[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 949 items for (author: dou & c)

EMDB-75840:
Cryo-EM structure of CRBN in complex with HBS1L and TNG-4857 (focused refinement)
Method: single particle / : Whittington DA

PDB-11mr:
Cryo-EM structure of CRBN in complex with HBS1L and TNG-4857 (focused refinement)
Method: single particle / : Whittington DA

EMDB-53451:
80S rabbit ribosome in complex with alpha-1-antitrypsin nascent chain on the P-site tRNA
Method: single particle / : Plessa E, Mitropoulou AN, Christodoulou J, Cabrita LD

EMDB-75038:
Cryo-EM structure of CRBN-DDB1 in complex with HBS1L and TNG961
Method: single particle / : Whittington DA

PDB-10ay:
Cryo-EM structure of CRBN-DDB1 in complex with HBS1L and TNG961
Method: single particle / : Whittington DA

EMDB-69767:
Nerearchaeum marumarumayae interaction with gram negative bacterium
Method: electron tomography / : Johnson MD, Shepherd DC, Ghosal D

EMDB-69768:
Large cell body of Nerearchaeum marumarumayae
Method: electron tomography / : Johnson MD, Shepherd DC, Ghosal D

EMDB-69769:
Extended cell phenotype of Nerearchaeum marumarumayae
Method: electron tomography / : Johnson MD, Shepherd DC, Ghosal D

EMDB-74082:
Cryo-EM structure of the endogenous U2/branchpoint spliceosomal complex (Proximal DHX15 state)
Method: single particle / : Liu S, Su T, Zhou ZH

EMDB-74089:
Cryo-EM structure of the endogenous U2/branchpoint spliceosomal complex (core)
Method: single particle / : Liu S, Su T, Zhou ZH

EMDB-74090:
Cryo-EM structure of the endogenous U2/branchpoint spliceosomal complex (Distal DHX15 state)
Method: single particle / : Liu S, Su T, Zhou ZH

EMDB-74099:
Cryo-EM structure of the endogenous U2/branchpoint spliceosomal complex (SF3A state 1)
Method: single particle / : Liu S, Su T, Zhou ZH

EMDB-74100:
Cryo-EM structure of the endogenous U2/branchpoint spliceosomal complex (SF3A state 2)
Method: single particle / : Liu S, Su T, Zhou ZH

PDB-9ze0:
Cryo-EM structure of the endogenous U2/branchpoint spliceosomal complex (Proximal DHX15 state)
Method: single particle / : Liu S, Su T, Zhou ZH

PDB-9ze2:
Cryo-EM structure of the endogenous U2/branchpoint spliceosomal complex (core)
Method: single particle / : Liu S, Su T, Zhou ZH

PDB-9ze3:
Cryo-EM structure of the endogenous U2/branchpoint spliceosomal complex (Distal DHX15 state)
Method: single particle / : Liu S, Su T, Zhou ZH

PDB-9zec:
Cryo-EM structure of the endogenous U2/branchpoint spliceosomal complex (SF3A state 1)
Method: single particle / : Liu S, Su T, Zhou ZH

PDB-9zed:
Cryo-EM structure of the endogenous U2/branchpoint spliceosomal complex (SF3A state 2)
Method: single particle / : Liu S, Su T, Zhou ZH

EMDB-56033:
CryoEM structure of coxsackievirus B1 virus-like particle with VP4 deletion
Method: single particle / : Levanova AL, Guryanov S, Ahmad KLL, Butcher SJ

PDB-9tkm:
CryoEM structure of coxsackievirus B1 virus-like particle with VP4 deletion
Method: single particle / : Levanova AL, Guryanov S, Ahmad KLL, Butcher SJ

EMDB-64007:
YcfA from Erwinia amylovora
Method: single particle / : Zhang L, Dou C, Jia XY, Zhu XF, Cheng W

EMDB-56368:
Escherichia coli ribosome arrested on a chimeric, 110-residue construct featuring a firefly-luciferase truncation followed by SecM(3W)
Method: single particle / : Westerfield JM, von Heijne G

EMDB-56453:
Escherichia coli ribosome arrested on a chimeric, 130-residue construct featuring a firefly-luciferase truncation followed by SecM(3W)
Method: single particle / : Westerfield JM, von Heijne G

EMDB-56462:
Escherichia coli ribosome arrested on a chimeric, 190-residue construct featuring a firefly-luciferase truncation followed by SecM(3W)
Method: single particle / : Westerfield JM, von Heijne G

EMDB-71798:
Cryo-EM structure of the human inward-rectifier potassium 7.1 channel (Kir7.1) extended state
Method: single particle / : Niu Q, Vu S, Zhang R, Fu Z, Lishko PV

EMDB-71799:
Cryo-EM structure of the human inward-rectifier potassium 7.1 channel (Kir7.1) docked state
Method: single particle / : Niu Q, Vu S, Zhang R, Fu Z, Lishko PV

EMDB-71800:
Cryo-EM structure of the human inward-rectifier potassium 7.1 channel (Kir7.1) with enantiomer of 17-hydroxyprogesterone caproate
Method: single particle / : Niu Q, Vu S, Zhang R, Fu Z, Lishko PV

PDB-9pr5:
Cryo-EM structure of the human inward-rectifier potassium 7.1 channel (Kir7.1) extended state
Method: single particle / : Niu Q, Vu S, Zhang R, Fu Z, Lishko PV

PDB-9pr6:
Cryo-EM structure of the human inward-rectifier potassium 7.1 channel (Kir7.1) docked state
Method: single particle / : Niu Q, Vu S, Zhang R, Fu Z, Lishko PV

PDB-9pr7:
Cryo-EM structure of the human inward-rectifier potassium 7.1 channel (Kir7.1) with enantiomer of 17-hydroxyprogesterone caproate
Method: single particle / : Niu Q, Vu S, Zhang R, Fu Z, Lishko PV

EMDB-72725:
Cryo-EM structure of ternary complex BCL6-CRBN-DDB1 with BMS-986458 (local refined), a potent and selective BCL6 ligand directed degrader (LDD)
Method: single particle / : Zhu J, Fang W, Pagarigan B

PDB-9ya9:
Cryo-EM structure of ternary complex BCL6-CRBN-DDB1 with BMS-986458 (local refined), a potent and selective BCL6 ligand directed degrader (LDD)
Method: single particle / : Zhu J, Fang W, Pagarigan B

EMDB-63360:
Inward-open Structure of human B0AT1
Method: single particle / : Imazu T, Miyaguchi I, Hiraizumi M

EMDB-52597:
Structure of E.coli ribosome with filamin mutant Y719E nascent chain at linker length of 47 amino acids, with tRNA
Method: single particle / : Mitropoulou A, Wlodarski T, Plessa E, Cabrita LD, Christodoulou J

PDB-9i3l:
Structure of E.coli ribosome with filamin mutant Y719E nascent chain at linker length of 47 amino acids, with tRNA
Method: single particle / : Mitropoulou A, Wlodarski T, Plessa E, Cabrita LD, Christodoulou J

EMDB-70791:
Cryo-EM structure of the DDB1/CRBN-MRT-5702-G3BP2 ternary complex
Method: single particle / : Quan C, Petzold G, Gainza P, Tsai J, Bunker RD, Wiedmer L, Donckele EJ

PDB-9os2:
Cryo-EM structure of the DDB1/CRBN-MRT-5702-G3BP2 ternary complex
Method: single particle / : Quan C, Petzold G, Gainza P, Tsai J, Bunker RD, Wiedmer L, Donckele EJ

EMDB-52500:
Structure of E.coli ribosome with nascent chain at linker length of 31 amino acids, with mRNA, P-site and A-site tRNAs
Method: single particle / : Mitropoulou A, Wlodarski T, Plessa E, Cabrita LD, Christodoulou J

PDB-9hy6:
Structure of E.coli ribosome with nascent chain at linker length of 31 amino acids, with mRNA, P-site and A-site tRNAs
Method: single particle / : Mitropoulou A, Wlodarski T, Plessa E, Cabrita LD, Christodoulou J

EMDB-48407:
E. coli GroEL bound with ATP and PBZ1587 inhibitor
Method: single particle / : Johnson SM, Chen Q

EMDB-48408:
E. coli SR1 single-ring GroEL oligomer
Method: single particle / : Johnson SM, Chen Q

EMDB-48409:
E. coli SR1 single-ring GroEL templated into pseudo-double-ring complex with PBZ1587 inhibitor
Method: single particle / : Johnson SM, Chen Q

EMDB-48410:
E. coli SR1 single-ring GroEL oligomer
Method: single particle / : Johnson SM, Chen Q

EMDB-48411:
E. coli GroES-GroEL-GroES football complex
Method: single particle / : Johnson SM, Chen Q

EMDB-52512:
Structure of WT E.coli ribosome with complexed filament nascent chain at length 34, with mRNA, P-site and A-site tRNAs, and mRNA
Method: single particle / : Mitropoulou A, Wlodarski T, Plessa E, Cabrita LD, Christodoulou J

PDB-9hym:
Structure of WT E.coli ribosome with complexed filament nascent chain at length 34, with mRNA, P-site and A-site tRNAs, and mRNA
Method: single particle / : Mitropoulou A, Wlodarski T, Plessa E, Cabrita LD, Christodoulou J

EMDB-52417:
Structure of WT E.coli ribosome with complexed filament nascent chain at length 47, with P-site tRNA
Method: single particle / : Mitropoulou A, Wlodarski T, Plessa E, Cabrita LD, Christodoulou J

EMDB-52418:
Structure of WT E.coli ribosome with complexed filament nascent chain at length 31, with P-site tRNAs
Method: single particle / : Mitropoulou A, Wlodarski T, Plessa E, Cabrita LD, Christodoulou J

PDB-9huq:
Structure of WT E.coli ribosome with complexed filament nascent chain at length 47, with P-site tRNA
Method: single particle / : Mitropoulou A, Wlodarski T, Plessa E, Cabrita LD, Christodoulou J

PDB-9hus:
Structure of WT E.coli ribosome with complexed filament nascent chain at length 31, with P-site tRNAs
Method: single particle / : Mitropoulou A, Wlodarski T, Plessa E, Cabrita LD, Christodoulou J

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more