[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 455 items for (author: dick & ra)

EMDB-49696:
Subtomogram Average of the Nipah Virus Matrix Lattice in Complex with Human Cell Membrane inside Virus-Like-Particles
Method: subtomogram averaging / : Upadhye VV, Dick RA

PDB-9nqy:
Nipah Virus Matrix Lattice in Complex with Human Cell Membrane
Method: subtomogram averaging / : Upadhye VV, Dick RA

EMDB-76371:
Half-translocated RNA polymerase elemental paused elongation complex, swiveled with ppGpp (ePEC swiveled + ppGpp)
Method: single particle / : Mueller AU, Darst SA, Landick R

EMDB-76372:
Half-translocated RNA polymerase elemental paused elongation complex, swiveled (ePEC swiveled)
Method: single particle / : Mueller AU, Darst SA, Landick R

EMDB-76373:
Pre-translocated RNA polymerase elemental paused elongation complex, TL open with ppGpp (ePEC open + ppGpp)
Method: single particle / : Mueller AU, Darst SA, Landick R

EMDB-76374:
Pre-translocated RNA polymerase elemental paused elongation complex, TL open (ePEC open)
Method: single particle / : Mueller AU, Darst SA, Landick R

EMDB-76375:
Pre-translocated RNA polymerase elemental paused elongation complex, TL semiclosed with ppGpp (ePEC semiclosed + ppGpp)
Method: single particle / : Mueller AU, Darst SA, Landick R

EMDB-76376:
Pre-translocated RNA polymerase elemental paused elongation complex, TL semiclosed (ePEC semiclosed)
Method: single particle / : Mueller AU, Darst SA, Landick R

EMDB-76377:
Pre-translocated RNA polymerase elemental paused elongation complex, TL closed with ppGpp (ePEC closed + ppGpp)
Method: single particle / : Mueller AU, Darst SA, Landick R

EMDB-76378:
Pre-translocated RNA polymerase elemental paused elongation complex, TL closed (ePEC closed)
Method: single particle / : Mueller AU, Darst SA, Landick R

PDB-12eb:
Half-translocated RNA polymerase elemental paused elongation complex, swiveled with ppGpp (ePEC swiveled + ppGpp)
Method: single particle / : Mueller AU, Darst SA, Landick R

PDB-12ec:
Half-translocated RNA polymerase elemental paused elongation complex, swiveled (ePEC swiveled)
Method: single particle / : Mueller AU, Darst SA, Landick R

PDB-12ed:
Pre-translocated RNA polymerase elemental paused elongation complex, TL open with ppGpp (ePEC open + ppGpp)
Method: single particle / : Mueller AU, Darst SA, Landick R

PDB-12ee:
Pre-translocated RNA polymerase elemental paused elongation complex, TL open (ePEC open)
Method: single particle / : Mueller AU, Darst SA, Landick R

PDB-12ef:
Pre-translocated RNA polymerase elemental paused elongation complex, TL semiclosed with ppGpp (ePEC semiclosed + ppGpp)
Method: single particle / : Mueller AU, Darst SA, Landick R

PDB-12eg:
Pre-translocated RNA polymerase elemental paused elongation complex, TL semiclosed (ePEC semiclosed)
Method: single particle / : Mueller AU, Darst SA, Landick R

PDB-12eh:
Pre-translocated RNA polymerase elemental paused elongation complex, TL closed with ppGpp (ePEC closed + ppGpp)
Method: single particle / : Mueller AU, Darst SA, Landick R

PDB-12ei:
Pre-translocated RNA polymerase elemental paused elongation complex, TL closed (ePEC closed)
Method: single particle / : Mueller AU, Darst SA, Landick R

EMDB-75283:
SemiClosed Eco-ePEC: Cryo-EM structure of Eco RNAP his-elemental paused elongation complex with a semi-closed active site (closed TL and SI3, open RH-FL)
Method: single particle / : Dhingra Y, Darst SA

EMDB-75284:
CBR9379 bound Open1 Eco-ePEC: Cryo-EM structure of Eco RNAP his-elemental paused elongation complex with an open active site (open TL, SI3 and RH-FL)
Method: single particle / : Dhingra Y, Darst SA

EMDB-75285:
CBR9379 bound Open2 Eco-ePEC: Cryo-EM structure of Eco RNAP his-elemental paused elongation complex with an open active site (open TL, SI3 and RH-FL)
Method: single particle / : Dhingra Y, Darst SA

EMDB-75286:
Closed Mtb-EC: Cryo-EM structure of Mtb RNAP elongation complex (substrate loading mimic) with a closed active site (closed TL and RH-FL)
Method: single particle / : Dhingra Y, Darst SA

EMDB-75287:
Open Mtb-EC: Cryo-EM structure of Mtb RNAP elongation complex (substrate loading mimic) with an open active site (open TL and RH-FL)
Method: single particle / : Dhingra Y, Darst SA

EMDB-75288:
SemiClosed Mtb-EC: Cryo-EM structure of Mtb RNAP elongation complex (substrate loading mimic) with a semiclosed active site (closed TL, open RH-FL)
Method: single particle / : Dhingra Y, Darst SA

EMDB-75289:
AAP-SO2 bound Open Mtb-EC: Cryo-EM structure of Mtb RNAP elongation complex (substrate loading mimic) with an open active site (open TL and RH-FL)
Method: single particle / : Dhingra Y, Darst SA

PDB-10me:
SemiClosed Eco-ePEC: Cryo-EM structure of Eco RNAP his-elemental paused elongation complex with a semi-closed active site (closed TL and SI3, open RH-FL)
Method: single particle / : Dhingra Y, Darst SA

PDB-10mf:
CBR9379 bound Open1 Eco-ePEC: Cryo-EM structure of Eco RNAP his-elemental paused elongation complex with an open active site (open TL, SI3 and RH-FL)
Method: single particle / : Dhingra Y, Darst SA

PDB-10mg:
CBR9379 bound Open2 Eco-ePEC: Cryo-EM structure of Eco RNAP his-elemental paused elongation complex with an open active site (open TL, SI3 and RH-FL)
Method: single particle / : Dhingra Y, Darst SA

PDB-10mi:
Closed Mtb-EC: Cryo-EM structure of Mtb RNAP elongation complex (substrate loading mimic) with a closed active site (closed TL and RH-FL)
Method: single particle / : Dhingra Y, Darst SA

PDB-10mj:
Open Mtb-EC: Cryo-EM structure of Mtb RNAP elongation complex (substrate loading mimic) with an open active site (open TL and RH-FL)
Method: single particle / : Dhingra Y, Darst SA

PDB-10mk:
SemiClosed Mtb-EC: Cryo-EM structure of Mtb RNAP elongation complex (substrate loading mimic) with a semiclosed active site (closed TL, open RH-FL)
Method: single particle / : Dhingra Y, Darst SA

PDB-10ml:
AAP-SO2 bound Open Mtb-EC: Cryo-EM structure of Mtb RNAP elongation complex (substrate loading mimic) with an open active site (open TL and RH-FL)
Method: single particle / : Dhingra Y, Darst SA

EMDB-53004:
Structure of eIF2B decamer bound to (P)eIF2 alpha and Compound A-(S)
Method: single particle / : Shilliday F, Maia de Oliveira T, Gancedo-Rodrigo M

PDB-9qc6:
Structure of eIF2B decamer bound to (P)eIF2 alpha and Compound A-(S)
Method: single particle / : Shilliday F, Maia de Oliveira T, Gancedo-Rodrigo M

EMDB-75279:
Closed Eco-ePEC: Cryo-EM structure of Eco RNAP his-elemental paused elongation complex with a closed active site (closed TL, SI3 and RH-FL)
Method: single particle / : Dhingra Y, Darst SA

EMDB-75280:
Open1 Eco-ePEC: Cryo-EM structure of Eco RNAP his-elemental paused elongation complex with an open active site (open TL, SI3 and RH-FL)
Method: single particle / : Dhingra Y, Darst SA

EMDB-75281:
Open2 Eco-ePEC: Cryo-EM structure of Eco RNAP his-elemental paused elongation complex with an open active site (open TL, SI3 and RH-FL)
Method: single particle / : Dhingra Y, Darst SA

EMDB-75282:
Open3 Eco-ePEC: Cryo-EM structure of Eco RNAP his-elemental paused elongation complex with an open active site (open TL, SI3 and RH-FL)
Method: single particle / : Dhingra Y, Darst SA

PDB-10ma:
Closed Eco-ePEC: Cryo-EM structure of Eco RNAP his-elemental paused elongation complex with a closed active site (closed TL, SI3 and RH-FL)
Method: single particle / : Dhingra Y, Darst SA

PDB-10mb:
Open1 Eco-ePEC: Cryo-EM structure of Eco RNAP his-elemental paused elongation complex with an open active site (open TL, SI3 and RH-FL)
Method: single particle / : Dhingra Y, Darst SA

PDB-10mc:
Open2 Eco-ePEC: Cryo-EM structure of Eco RNAP his-elemental paused elongation complex with an open active site (open TL, SI3 and RH-FL)
Method: single particle / : Dhingra Y, Darst SA

PDB-10md:
Open3 Eco-ePEC: Cryo-EM structure of Eco RNAP his-elemental paused elongation complex with an open active site (open TL, SI3 and RH-FL)
Method: single particle / : Dhingra Y, Darst SA

EMDB-76230:
Structure of TMEM106B doublet from patient brain derived lysosomes
Method: subtomogram averaging / : Fernandez MF, Mosalaganti S

EMDB-76248:
Structure of TMEM106B singlet from patient brain derived lysosomes
Method: subtomogram averaging / : Fernandez MF, Mosalaganti S

EMDB-57163:
Cryo-ET of a plasmodesma in wild type Physcomitrium patens gametophore leaflet tissue
Method: electron tomography / : Dickmanns M, Poege M, Xu P, Gombos S, Barr ZK, Miras M, Plitzko J, Simon R, Schulze W, Frommer WB, Baumeister W

EMDB-57164:
Cryo-ET of a plasmodesma in wild type Physcomitrium patens protonema tissue
Method: electron tomography / : Dickmanns M, Poege M, Xu P, Gombos S, Barr ZK, Miras M, Plitzko J, Simon R, Schulze W, Frommer WB, Baumeister W

EMDB-57165:
Cryo-ET of a plasmodesma in wild type Physcomitrium patens gametophore leaflet tissue
Method: electron tomography / : Dickmanns M, Poege M, Xu P, Gombos S, Barr ZK, Miras M, Plitzko J, Simon R, Schulze W, Frommer WB, Baumeister W

EMDB-57166:
Cryo-ET of a plasmodesma in GHL17 Physcomitrium patens protonema tissue
Method: electron tomography / : Dickmanns M, Poege M, Xu P, Gombos S, Barr ZK, Miras M, Plitzko J, Simon R, Schulze W, Frommer WB, Baumeister W

EMDB-57167:
Cryo-ET of a plasmodesma in GHL17 Physcomitrium patens protonema tissue
Method: electron tomography / : Dickmanns M, Poege M, Xu P, Gombos S, Barr ZK, Miras M, Plitzko J, Simon R, Schulze W, Frommer WB, Baumeister W

EMDB-57168:
Cryo-ET of a plasmodesma in wild type Physcomitrium patens protonema tissue treated with abscisic acid
Method: electron tomography / : Dickmanns M, Poege M, Xu P, Gombos S, Barr ZK, Miras M, Plitzko J, Simon R, Schulze W, Frommer WB, Baumeister W

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more