[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 163 items for (author: chakraborty & s)

EMDB-53534:
p53 bound to nucleosome at position SHL+5.9 (non-crosslinked sample, full map)
Method: single particle / : Chakraborty D, Kater L, Kempf G, Cavadini S, Thoma NH

EMDB-53532:
p53 bound to nucleosome at position SHL+5.9 (non-crosslinked sample, composite map)
Method: single particle / : Chakraborty D, Kater L, Kempf G, Cavadini S, Thoma NH

PDB-9r2m:
p53 bound to nucleosome at position SHL+5.9 (non-crosslinked sample, composite map)
Method: single particle / : Chakraborty D, Kater L, Kempf G, Cavadini S, Thoma NH

EMDB-53478:
p53 bound to the nucleosome at position SHL-5.7 (crosslinked sample)
Method: single particle / : Chakraborty D, Michael AK, Kempf G, Cavadini S, Kater L, Thoma NH

PDB-9r04:
p53 bound to the nucleosome at position SHL-5.7 (crosslinked sample)
Method: single particle / : Chakraborty D, Michael AK, Kempf G, Cavadini S, Kater L, Thoma NH

EMDB-53517:
USP7 bound to a nucleosome/p53 complex
Method: single particle / : Chakraborty D, Kater L, Kempf G, Cavadini S, Thoma NH

EMDB-53535:
p53 bound to nucleosome at position SHL+5.9 (non-crosslinked sample, focus refined map of p53)
Method: single particle / : Chakraborty D, Kater L, Kempf G, Cavadini S, Thoma NH

EMDB-53537:
p53 bound to nucleosome at position SHL-5.7 (non-crosslinked sample)
Method: single particle / : Chakraborty D, Michael AK, Kempf G, Cavadini S, Kater L, Thoma NH

PDB-9r2q:
p53 bound to nucleosome at position SHL-5.7 (non-crosslinked sample)
Method: single particle / : Chakraborty D, Michael AK, Kempf G, Cavadini S, Kater L, Thoma NH

EMDB-53536:
p53 bound to nucleosome at position SHL+5.9 (crosslinked sample)
Method: single particle / : Chakraborty D, Kater L, Kempf G, Cavadini S, Thoma NH

PDB-9r2p:
p53 bound to nucleosome at position SHL+5.9 (crosslinked sample)
Method: single particle / : Chakraborty D, Kater L, Kempf G, Cavadini S, Thoma NH

EMDB-44744:
Structure of human Xk-related protein 4
Method: single particle / : Chakraborty S, Accardi A

PDB-9boj:
Structure of human Xk-related protein 4
Method: single particle / : Chakraborty S, Accardi A

EMDB-51726:
WT-IAPP cryo-EM structure Type SS - control reaction
Method: helical / : Wilkinson M, Taylor AIP, Xu Y, Chakraborty P, Brinkworth A, Willis LF, Zhuravleva A, Ranson NA, Foster R, Radford SE

EMDB-51730:
WT-IAPP cryo-EM structure Type LL - control reaction
Method: helical / : Wilkinson M, Taylor AIP, Xu Y, Chakraborty P, Brinkworth A, Willis LF, Zhuravleva A, Ranson NA, Foster R, Radford SE

EMDB-51733:
WT-IAPP cryo-EM structure Type LLU - control reaction
Method: helical / : Wilkinson M, Taylor AIP, Xu Y, Chakraborty P, Brinkworth A, Willis LF, Zhuravleva A, Ranson NA, Foster R, Radford SE

EMDB-51734:
WT-IAPP cryo-EM structure Type LLUU - control reaction
Method: helical / : Wilkinson M, Taylor AIP, Xu Y, Chakraborty P, Brinkworth A, Willis LF, Zhuravleva A, Ranson NA, Foster R, Radford SE

EMDB-51735:
WT-IAPP cryo-EM structure Type LL, doxazosin reaction
Method: helical / : Wilkinson M, Taylor AIP, Xu Y, Chakraborty P, Brinkworth A, Willis LF, Zhuravleva A, Ranson NA, Foster R, Radford SE

EMDB-51736:
WT-IAPP cryo-EM structure Type LLU, doxazosin reaction
Method: helical / : Wilkinson M, Taylor AIP, Xu Y, Chakraborty P, Brinkworth A, Willis LF, Zhuravleva A, Ranson NA, Foster R, Radford SE

EMDB-51737:
WT-IAPP cryo-EM structure Type LLUU, doxazosin reaction
Method: helical / : Wilkinson M, Taylor AIP, Xu Y, Chakraborty P, Brinkworth A, Willis LF, Zhuravleva A, Ranson NA, Foster R, Radford SE

PDB-9gz6:
WT-IAPP cryo-EM structure Type SS - control reaction
Method: helical / : Wilkinson M, Taylor AIP, Xu Y, Chakraborty P, Brinkworth A, Willis LF, Zhuravleva A, Ranson NA, Foster R, Radford SE

PDB-9gzp:
WT-IAPP cryo-EM structure Type LL - control reaction
Method: helical / : Wilkinson M, Taylor AIP, Xu Y, Chakraborty P, Brinkworth A, Willis LF, Zhuravleva A, Ranson NA, Foster R, Radford SE

PDB-9gzs:
WT-IAPP cryo-EM structure Type LLU - control reaction
Method: helical / : Wilkinson M, Taylor AIP, Xu Y, Chakraborty P, Brinkworth A, Willis LF, Zhuravleva A, Ranson NA, Foster R, Radford SE

PDB-9gzt:
WT-IAPP cryo-EM structure Type LLUU - control reaction
Method: helical / : Wilkinson M, Taylor AIP, Xu Y, Chakraborty P, Brinkworth A, Willis LF, Zhuravleva A, Ranson NA, Foster R, Radford SE

PDB-9gzw:
WT-IAPP cryo-EM structure Type LL, doxazosin reaction
Method: helical / : Wilkinson M, Taylor AIP, Xu Y, Chakraborty P, Brinkworth A, Willis LF, Zhuravleva A, Ranson NA, Foster R, Radford SE

PDB-9gzx:
WT-IAPP cryo-EM structure Type LLU, doxazosin reaction
Method: helical / : Wilkinson M, Taylor AIP, Xu Y, Chakraborty P, Brinkworth A, Willis LF, Zhuravleva A, Ranson NA, Foster R, Radford SE

PDB-9gzy:
WT-IAPP cryo-EM structure Type LLUU, doxazosin reaction
Method: helical / : Wilkinson M, Taylor AIP, Xu Y, Chakraborty P, Brinkworth A, Willis LF, Zhuravleva A, Ranson NA, Foster R, Radford SE

EMDB-51804:
In situ structure of cytoplasmic microtubule of Chlamydomonas reinhardtii
Method: subtomogram averaging / : Chakraborty S, Obr M, Zhang X, Kelley R, Khavnekar S, Waltz F, Righetto RD, Engel B, Kotecha A

EMDB-51789:
In situ clathrin subtomogram average from Chlamydomonas reinhardtii
Method: subtomogram averaging / : Tagiltsev G, Righetto RD, Khavnekar S, Kotecha A, Engel BD, Briggs JAG

EMDB-51731:
In situ PSII subtomogram average from Chlamydomonas reinhardtii
Method: subtomogram averaging / : van Dorst S, Heebner JE, Lamm L, Righetto RD, Wietrzynski W, Khavnekar S, Kotecha A, Engel BD

EMDB-42077:
Diversity-generating retroelement (DGR) ribonucleoprotein reverse transcriptase - Active state (N-occupied)
Method: single particle / : Biswas T, Handa S, Ghosh P

EMDB-42078:
Diversity-generating retroelement (DGR) ribonucleoprotein reverse transcriptase - Pre-active State 1a
Method: single particle / : Biswas T, Handa S, Ghosh P

EMDB-42079:
Diversity-generating retroelement (DGR) ribonucleoprotein reverse transcriptase- Active state (N-empty) 1a
Method: single particle / : Biswas T, Handa S, Ghosh P

EMDB-42080:
Diversity-generating retroelement (DGR) ribonucleoprotein reverse transcriptase - Pre-active state 1b
Method: single particle / : Biswas T, Handa S, Ghosh P

EMDB-42081:
Diversity-generating retroelement (DGR) ribonucleoprotein reverse transcriptase - Active State (N-empty) 1b
Method: single particle / : Biswas T, Handa S, Ghosh P

EMDB-42082:
Diversity-generating retroelement (DGR) ribonucleoprotein reverse transcriptase - Resting State 1b
Method: single particle / : Biswas T, Handa S, Ghosh P

EMDB-42083:
Diversity-generating retroelement (DGR) ribonucleoprotein reverse transcriptase - Pre-active State 2
Method: single particle / : Biswas T, Handa S, Ghosh P

EMDB-42084:
Diversity-generating retroelement (DGR) ribonucleoprotein reverse transcriptase - Resting State 1a
Method: single particle / : Biswas T, Handa S, Ghosh P

EMDB-42085:
Diversity-generating retroelement (DGR) ribonucleoprotein - Resting state 1c
Method: single particle / : Biswas T, Handa S, Ghosh P

PDB-8ub7:
Diversity-generating retroelement (DGR) ribonucleoprotein reverse transcriptase - Active state (N-occupied)
Method: single particle / : Biswas T, Handa S, Ghosh P

PDB-8ub8:
Diversity-generating retroelement (DGR) ribonucleoprotein reverse transcriptase - Pre-active State 1a
Method: single particle / : Biswas T, Handa S, Ghosh P

PDB-8ub9:
Diversity-generating retroelement (DGR) ribonucleoprotein reverse transcriptase- Active state (N-empty) 1a
Method: single particle / : Biswas T, Handa S, Ghosh P

PDB-8uba:
Diversity-generating retroelement (DGR) ribonucleoprotein reverse transcriptase - Pre-active state 1b
Method: single particle / : Biswas T, Handa S, Ghosh P

PDB-8ubb:
Diversity-generating retroelement (DGR) ribonucleoprotein reverse transcriptase - Active State (N-empty) 1b
Method: single particle / : Biswas T, Handa S, Ghosh P

PDB-8ubc:
Diversity-generating retroelement (DGR) ribonucleoprotein reverse transcriptase - Resting State 1b
Method: single particle / : Biswas T, Handa S, Ghosh P

PDB-8ubd:
Diversity-generating retroelement (DGR) ribonucleoprotein reverse transcriptase - Pre-active State 2
Method: single particle / : Biswas T, Handa S, Ghosh P

PDB-8ube:
Diversity-generating retroelement (DGR) ribonucleoprotein reverse transcriptase - Resting State 1a
Method: single particle / : Biswas T, Handa S, Ghosh P

PDB-8ubf:
Diversity-generating retroelement (DGR) ribonucleoprotein - Resting state 1c
Method: single particle / : Biswas T, Handa S, Ghosh P

EMDB-19906:
In situ nucleosome subtomogram average from Chlamydomonas reinhardtii
Method: subtomogram averaging / : Michael AK, Righetto RD, Obr M, van der Stappen P, Lamm L, Khavnekar S, Kotecha A, Engel BD

EMDB-15444:
Subtomogram average of floating microtubule inner protein 4
Method: subtomogram averaging / : Chakraborty S, Martinez-Sanchez A, Baumeister W, Mahamid J

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more