[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 94 items for (author: burns & i)

EMDB-69767:
Nerearchaeum marumarumayae interaction with gram negative bacterium
Method: electron tomography / : Johnson MD, Shepherd DC, Ghosal D

EMDB-69768:
Large cell body of Nerearchaeum marumarumayae
Method: electron tomography / : Johnson MD, Shepherd DC, Ghosal D

EMDB-69769:
Extended cell phenotype of Nerearchaeum marumarumayae
Method: electron tomography / : Johnson MD, Shepherd DC, Ghosal D

EMDB-73220:
Cryo-EM structure of Escherichia coli transcription initiation complex with GpA and pseudouridimycin (PUM)
Method: single particle / : You LL, Ebright RH

EMDB-73221:
Cryo-EM structure of Escherichia coli transcription initiation complex with GpA and des-hydroxy pseudouridimycin (des-hydroxy PUM)
Method: single particle / : You LL, Ebright RH

PDB-9ynp:
Cryo-EM structure of Escherichia coli transcription initiation complex with GpA and pseudouridimycin (PUM)
Method: single particle / : You LL, Ebright RH

PDB-9ynq:
Cryo-EM structure of Escherichia coli transcription initiation complex with GpA and des-hydroxy pseudouridimycin (des-hydroxy PUM)
Method: single particle / : You LL, Ebright RH

EMDB-71677:
HIV-1 bnAb 1-23 in complex with BG505 MD39 SOSIP and RM19R
Method: single particle / : Bader DLV, Ozorowski G, Ward AB

EMDB-71678:
HIV-1 bnAb 9-71 in complex with BG505 MD39 SOSIP and RM19R
Method: single particle / : Bader DLV, Ozorowski G, Ward AB

PDB-9pit:
HIV-1 bnAb 1-23 in complex with BG505 MD39 SOSIP and RM19R
Method: single particle / : Bader DLV, Ozorowski G, Ward AB

PDB-9piv:
HIV-1 bnAb 9-71 in complex with BG505 MD39 SOSIP and RM19R
Method: single particle / : Bader DLV, Ozorowski G, Ward AB

EMDB-41024:
MD65 N332-GT5 SOSIP in complex with RM_N332_03 Fab and RM20A3 Fab
Method: single particle / : Ozorowski G, Torres JL, Ward AB

EMDB-41025:
MD65 N332-GT5 SOSIP in complex with RM_N332_36 Fab and RM20A3 Fab
Method: single particle / : Ozorowski G, Torres JL, Ward AB

EMDB-41026:
MD65 N332-GT5 SOSIP in complex with RM_N332_32 Fab and RM20A3
Method: single particle / : Ozorowski G, Torres JL, Ward AB

EMDB-41027:
MD65 N332-GT5 SOSIP in complex with RM_N332_08 Fab and RM20A3 Fab
Method: single particle / : Ozorowski G, Torres JL, Ward AB

EMDB-41034:
MD64 N332-GT5 SOSIP
Method: single particle / : Ozorowski G, Torres JL, Ward AB

EMDB-41035:
MD65 N332-GT5 SOSIP in complex with RM_N332_07 Fab and RM20A3 Fab
Method: single particle / : Ozorowski G, Torres JL, Ward AB

PDB-8t49:
MD65 N332-GT5 SOSIP in complex with RM_N332_03 Fab and RM20A3 Fab
Method: single particle / : Ozorowski G, Torres JL, Ward AB

PDB-8t4a:
MD65 N332-GT5 SOSIP in complex with RM_N332_36 Fab and RM20A3 Fab
Method: single particle / : Ozorowski G, Torres JL, Ward AB

PDB-8t4b:
MD65 N332-GT5 SOSIP in complex with RM_N332_32 Fab and RM20A3
Method: single particle / : Ozorowski G, Torres JL, Ward AB

PDB-8t4d:
MD65 N332-GT5 SOSIP in complex with RM_N332_08 Fab and RM20A3 Fab
Method: single particle / : Ozorowski G, Torres JL, Ward AB

PDB-8t4k:
MD64 N332-GT5 SOSIP
Method: single particle / : Ozorowski G, Torres JL, Ward AB

PDB-8t4l:
MD65 N332-GT5 SOSIP in complex with RM_N332_07 Fab and RM20A3 Fab
Method: single particle / : Ozorowski G, Torres JL, Ward AB

EMDB-40856:
Single particle reconstruction of the human LINE-1 ORF2p without substrate (apo)
Method: single particle / : van Eeuwen T, Taylor MS, Rout MP

EMDB-40858:
Structure of LINE-1 ORF2p with template:primer hybrid
Method: single particle / : van Eeuwen T, Taylor MS, Rout MP

EMDB-40859:
Structure of LINE-1 ORF2p with an oligo(A) template
Method: single particle / : van Eeuwen T, Taylor MS, Rout MP

PDB-8sxt:
Structure of LINE-1 ORF2p with template:primer hybrid
Method: single particle / : van Eeuwen T, Taylor MS, Rout MP

PDB-8sxu:
Structure of LINE-1 ORF2p with an oligo(A) template
Method: single particle / : van Eeuwen T, Taylor MS, Rout MP

EMDB-27249:
Yeast mitochondrial small subunit assembly intermediate (State 1)
Method: single particle / : Burnside C, Harper N, Klinge S

EMDB-27250:
Yeast mitochondrial small subunit assembly intermediate (State 2)
Method: single particle / : Burnside C, Harper NJ, Klinge S

PDB-8d8j:
Yeast mitochondrial small subunit assembly intermediate (State 1)
Method: single particle / : Burnside C, Harper N, Klinge S

PDB-8d8k:
Yeast mitochondrial small subunit assembly intermediate (State 2)
Method: single particle / : Burnside C, Harper NJ, Klinge S

EMDB-26966:
Human mitochondrial small subunit assembly intermediate (State A)
Method: single particle / : Harper NJ, Burnside C, Klinge S

EMDB-26967:
Human mitochondrial small subunit assembly intermediate (State B)
Method: single particle / : Harper NJ, Burnside C, Klinge S

EMDB-26968:
Human mitochondrial small subunit assembly intermediate (State C)
Method: single particle / : Harper NJ, Burnside C, Klinge S

EMDB-26969:
Human mitochondrial small subunit assembly intermediate (State D)
Method: single particle / : Harper NJ, Burnside C, Klinge S

EMDB-26970:
Human mitochondrial small subunit assembly intermediate (State E)
Method: single particle / : Harper NJ, Burnside C, Klinge S

EMDB-26971:
Human mitochondrial small subunit assembly intermediate (State C*)
Method: single particle / : Harper NJ, Burnside C, Klinge S

EMDB-27251:
Yeast mitochondrial small subunit assembly intermediate (State 3)
Method: single particle / : Burnside C, Harper N, Klinge S

PDB-8csp:
Human mitochondrial small subunit assembly intermediate (State A)
Method: single particle / : Harper NJ, Burnside C, Klinge S

PDB-8csq:
Human mitochondrial small subunit assembly intermediate (State B)
Method: single particle / : Harper NJ, Burnside C, Klinge S

PDB-8csr:
Human mitochondrial small subunit assembly intermediate (State C)
Method: single particle / : Harper NJ, Burnside C, Klinge S

PDB-8css:
Human mitochondrial small subunit assembly intermediate (State D)
Method: single particle / : Harper NJ, Burnside C, Klinge S

PDB-8cst:
Human mitochondrial small subunit assembly intermediate (State E)
Method: single particle / : Harper NJ, Burnside C, Klinge S

PDB-8csu:
Human mitochondrial small subunit assembly intermediate (State C*)
Method: single particle / : Harper NJ, Burnside C, Klinge S

PDB-8d8l:
Yeast mitochondrial small subunit assembly intermediate (State 3)
Method: single particle / : Burnside C, Harper N, Klinge S

EMDB-25621:
The Envelope Glycoprotein SIVmac239.K180S SOSIP trimer in complex with 3 copies of the neutralizing antibody K11
Method: single particle / : Berndsen ZT, Ward AB

EMDB-25623:
SIVmac239.K180S SOSIP in complex with FZ019.2 Fab
Method: single particle / : Berndsen ZT

EMDB-25624:
SIVmac239.K180S SOSIP in complex with FZ012.7 Fab
Method: single particle / : Berndsen ZT, Lee W

EMDB-25625:
SIVmac239.K180S SOSIP in complex with an unknown Fab from the polyclonal serum of the SIV-infected Rhesus Macaque Rh33519
Method: single particle / : Berndsen ZT, Lee W

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more