[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 161 items for (author: bravo & j)

EMDB-50018:
Avian reovirus nonstructural protein sigmaNS
Method: single particle / : Tuma R, Aspinall L

EMDB-48671:
C6 Herpes Virus Simplex Neutralizing Nanobody Bound to HSV Glycoprotein gB
Method: single particle / : Viadiu H, Abernathy E, Lee CV, Hung M, Yu Y, Xing W, Yu X

EMDB-48677:
D1 Herpes Virus Simplex Neutralizing Nanobody Bound to HSV Glycoprotein gB
Method: single particle / : Viadiu H, Abernathy E, Lee CV, Hung M, Yu Y, Xing W, Yu X

EMDB-48730:
D7 Herpes Virus Simplex Neutralizing Nanobody Bound to HSV Glycoprotein gD
Method: single particle / : Viadiu H, Abernathy E, Lee CV, Hung M, Yu Y, Xing W, Yu X

PDB-9mvu:
C6 Herpes Virus Simplex Neutralizing Nanobody Bound to HSV Glycoprotein gB
Method: single particle / : Viadiu H, Abernathy E, Lee CV, Hung M, Yu Y, Xing W, Yu X

PDB-9mw5:
D1 Herpes Virus Simplex Neutralizing Nanobody Bound to HSV Glycoprotein gB
Method: single particle / : Viadiu H, Abernathy E, Lee CV, Hung M, Yu Y, Xing W, Yu X

PDB-9my8:
D7 Herpes Virus Simplex Neutralizing Nanobody Bound to HSV Glycoprotein gD
Method: single particle / : Viadiu H, Abernathy E, Lee CV, Hung M, Yu Y, Xing W, Yu X

EMDB-43757:
Cas9d Effector:sgRNA Binary Complex
Method: single particle / : Fregoso Ocampo R, Bravo JPK, Taylor DW

EMDB-43760:
Cas9d 6bp R-loop Seed Complex
Method: single particle / : Fregoso Ocampo R, Bravo JPK, Taylor DW

EMDB-43878:
Cas9d 20bp R-loop Complex
Method: single particle / : Fregoso Ocampo R, Taylor DW, Bravo JPK

PDB-8w2s:
Cas9d Effector:sgRNA Binary Complex
Method: single particle / : Fregoso Ocampo R, Bravo JPK, Taylor DW

PDB-8w2z:
Cas9d 6bp R-loop Seed Complex
Method: single particle / : Fregoso Ocampo R, Bravo JPK, Taylor DW

PDB-9auf:
Cas9d 20bp R-loop Complex
Method: single particle / : Fregoso Ocampo R, Taylor DW, Bravo JPK

EMDB-42378:
Structure of PsCas9 in complex with gRNA and DNA in product state
Method: single particle / : Bravo JPK, Taylor DW

PDB-8umf:
Structure of PsCas9 in complex with gRNA and DNA in product state
Method: single particle / : Bravo JPK, Taylor DW

EMDB-41868:
DdmDE handover complex consensus reconstruction
Method: single particle / : Bravo JPK

EMDB-41875:
Refinement of DdmE within DdmDE handover complex
Method: single particle / : Bravo JPK, Taylor DW

EMDB-41785:
DdmD dimer in complex with ssDNA
Method: single particle / : Bravo JPK, Taylor DW

EMDB-41790:
DdmD monomer in complex with ssDNA
Method: single particle / : Bravo JPK, Taylor DW

EMDB-41865:
DdmDE handover complex
Method: single particle / : Bravo JPK, Taylor DW

PDB-8u0u:
DdmD dimer in complex with ssDNA
Method: single particle / : Bravo JPK

PDB-8u0w:
DdmD monomer in complex with ssDNA
Method: single particle / : Bravo JPK

PDB-8u3k:
DdmDE handover complex
Method: single particle / : Bravo JPK

EMDB-41781:
DdmE in complex with guide and target DNA
Method: single particle / : Bravo JPK, Taylor DW

EMDB-44825:
DdmD dimer apoprotein (CASP target)
Method: single particle / : Bravo JPK, Taylor DW

PDB-8u0j:
DdmE in complex with guide and target DNA
Method: single particle / : Bravo JPK

PDB-9bqv:
DdmD dimer apoprotein
Method: single particle / : Bravo JPK, Taylor DW

EMDB-17231:
Structure of the FloA-NfeD dimer
Method: single particle / : Ukleja M, Kricks L, Torrens G, Peschiera I, Rodrigues-Lopes I, Krupka M, Garcia Fernandez J, del Campo R, Eulalio A, Mateus A, Lopez Bravo M, Rico AI, Cava F, Lopez D

EMDB-17233:
Structure of the FloA-NfeD complex with Pbp2a pray bound
Method: single particle / : Ukleja M, Kricks L, Torrens G, Peschiera I, Rodrigues-Lopes I, Krupka M, Garcia Fernandez J, del Campo R, Eulalio A, Mateus A, Lopez Bravo M, Rico AI, Cava F, Lopez D

EMDB-17217:
Structure of Staphylococcus aureus FloA protein
Method: single particle / : Ukleja M, Kricks L, Torrens G, Peschiera I, Rodrigues-Lopes I, Krupka M, Garcia Fernandez J, del Campo R, Eulalio A, Mateus A, Lopez Bravo M, Rico AI, Cava F, Lopez D

EMDB-17222:
Structure of the FloA-NfeD complex
Method: single particle / : Ukleja M, Kricks L, Torrens G, Peschiera I, Rodrigues-Lopes I, Krupka M, Garcia Fernandez J, del Campo R, Eulalio A, Mateus A, Lopez Bravo M, Rico AI, Cava F, Lopez D

EMDB-41088:
SpRY-Cas9:gRNA complex bound to non-target DNA with 10 bp R-loop
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

PDB-8t79:
SpRY-Cas9:gRNA complex bound to non-target DNA with 10 bp R-loop
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

EMDB-40681:
SpRY-Cas9:gRNA complex targeting TGG PAM DNA
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

EMDB-40705:
SpRY-Cas9:gRNA complex targeting TTC PAM DNA
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

EMDB-40740:
SpRY-Cas9:gRNA complex targeting TAC PAM DNA
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

EMDB-41073:
SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 0 bp R-loop
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

EMDB-41074:
SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 2 bp R-loop
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

EMDB-41079:
SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 10 bp R-loop
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

EMDB-41080:
SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 13 bp R-loop
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

EMDB-41083:
SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 18 bp R-loop
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

EMDB-41084:
SpRY-Cas9:gRNA complex bound to non-target DNA with 1 bp R-loop
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

EMDB-41085:
SpRY-Cas9:gRNA complex targeting TAC PAM DNA with 3 bp R-loop
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

EMDB-41086:
SpRY-Cas9:gRNA complex bound to non-target DNA with 6 bp R-loop
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

EMDB-41087:
SpRY-Cas9:gRNA complex bound to non-target DNA with 8 bp R-loop
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

EMDB-41093:
SpRYmer bound to NAC PAM DNA
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

EMDB-41775:
SpG Cas9 with NGC PAM DNA target
Method: single particle / : Bravo JPK, Hibshman GN, Taylor DW

EMDB-41867:
SpG Cas9 with NGG PAM DNA target
Method: single particle / : Bravo JPK, Hibshman GN, Taylor DW

PDB-8spq:
SpRY-Cas9:gRNA complex targeting TGG PAM DNA
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

PDB-8sqh:
SpRY-Cas9:gRNA complex targeting TTC PAM DNA
Method: single particle / : Hibshman GN, Bravo JPK, Taylor DW

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more